Wall clock time and date at job start Sat Apr 11 2020 05:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 119.99669 * 2 1 4 4 H 1.48507 * 109.47056 * 240.00080 * 3 2 1 5 5 H 1.48508 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47333 * 120.00013 * 3 2 1 7 7 C 1.38813 * 120.00732 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00190 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99548 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.65098 * 0.03593 * 9 7 2 11 11 C 1.54909 * 104.83381 * 204.09440 * 10 9 7 12 12 C 1.55157 * 101.57958 * 322.98989 * 11 10 9 13 13 H 1.09002 * 110.72213 * 277.13898 * 12 11 10 14 14 C 1.53001 * 110.87088 * 153.93501 * 12 11 10 15 15 C 1.52996 * 109.47434 * 177.54647 * 14 12 11 16 16 N 1.46497 * 109.47458 * 179.97438 * 15 14 12 17 17 C 1.34777 * 120.00116 * 179.97438 * 16 15 14 18 18 O 1.21571 * 119.99937 * 0.02562 * 17 16 15 19 19 C 1.47695 * 119.99696 * 180.02562 * 17 16 15 20 20 C 1.39668 * 120.16298 * 359.97438 * 19 17 16 21 21 C 1.37856 * 119.90578 * 180.02562 * 20 19 17 22 22 C 1.38461 * 120.22655 * 0.02562 * 21 20 19 23 23 C 1.38302 * 120.32528 * 0.02562 * 22 21 20 24 24 Cl 1.73595 * 119.94998 * 180.02562 * 23 22 21 25 25 C 1.38441 * 120.09472 * 359.67846 * 23 22 21 26 26 F 1.35095 * 120.11516 * 180.29990 * 25 23 22 27 27 C 1.47018 * 125.64797 * 179.97438 * 9 7 2 28 28 H 0.96996 * 120.00556 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.36876 * 322.93757 * 10 9 7 30 30 H 1.09009 * 110.36320 * 85.14431 * 10 9 7 31 31 H 1.09000 * 111.00466 * 204.91585 * 11 10 9 32 32 H 1.08997 * 111.00194 * 81.06198 * 11 10 9 33 33 H 1.08999 * 109.47061 * 297.54951 * 14 12 11 34 34 H 1.09006 * 109.46767 * 57.54604 * 14 12 11 35 35 H 1.08999 * 109.47244 * 300.00191 * 15 14 12 36 36 H 1.09005 * 109.46729 * 59.99925 * 15 14 12 37 37 H 0.96998 * 119.99716 * 0.02562 * 16 15 14 38 38 H 1.08001 * 120.05271 * 359.97438 * 20 19 17 39 39 H 1.07990 * 119.89202 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.83804 * 179.97438 * 22 21 20 41 41 H 1.08998 * 109.88222 * 59.56024 * 27 9 7 42 42 H 1.09005 * 110.01447 * 298.46604 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2850 2.7466 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1413 -2.5333 -0.0007 11 6 -0.4019 -3.9323 0.6111 12 6 0.7787 -4.7524 0.0271 13 1 0.5471 -5.0981 -0.9803 14 6 1.1246 -5.9333 0.9365 15 6 2.2493 -6.7536 0.3017 16 7 2.5809 -7.8839 1.1726 17 6 3.5497 -8.7494 0.8140 18 8 4.1488 -8.5919 -0.2321 19 6 3.8835 -9.8893 1.6918 20 6 3.1978 -10.0731 2.8946 21 6 3.5140 -11.1386 3.7102 22 6 4.5098 -12.0272 3.3414 23 6 5.1957 -11.8535 2.1531 24 17 6.4419 -12.9738 1.7000 25 6 4.8848 -10.7917 1.3209 26 9 5.5503 -10.6252 0.1571 27 6 1.9320 -3.7274 0.0005 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5998 -1.7589 0.6142 30 1 -0.5264 -2.4851 -1.0194 31 1 -1.3589 -4.3329 0.2768 32 1 -0.3532 -3.8980 1.6994 33 1 1.4502 -5.5608 1.9077 34 1 0.2440 -6.5627 1.0653 35 1 1.9237 -7.1261 -0.6696 36 1 3.1298 -6.1241 0.1728 37 1 2.1026 -8.0098 2.0070 38 1 2.4213 -9.3812 3.1857 39 1 2.9834 -11.2808 4.6399 40 1 4.7528 -12.8595 3.9854 41 1 2.5580 -3.8509 0.8843 42 1 2.5306 -3.8659 -0.8999 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267569997.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:17 Heat of formation + Delta-G solvation = -61.342994 kcal Electronic energy + Delta-G solvation = -25970.684452 eV Core-core repulsion = 21890.644832 eV Total energy + Delta-G solvation = -4080.039620 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.09464 -41.24285 -39.69815 -39.28297 -37.61728 -36.55573 -34.82965 -33.04062 -31.97906 -31.54871 -30.60587 -28.20454 -26.68572 -25.24701 -23.99253 -23.32005 -22.05949 -21.80674 -20.79012 -19.39611 -18.89368 -18.25224 -17.89853 -17.20585 -17.01316 -16.70232 -16.63653 -16.43353 -16.11406 -15.69564 -15.55153 -14.92567 -14.82663 -14.41866 -14.26427 -14.09048 -13.80679 -13.52096 -13.41522 -13.32637 -13.12699 -12.83576 -12.69932 -12.66281 -12.60264 -12.23438 -12.19329 -12.03248 -11.77449 -11.58031 -11.42787 -11.26468 -11.05457 -10.73378 -10.37010 -10.04415 -9.85940 -8.87317 -7.77437 -5.21686 -0.52472 -0.16262 0.84777 1.44905 1.48248 1.54682 1.62284 1.97415 2.47582 2.49319 2.89654 3.30833 3.39059 3.68310 3.74826 3.76315 3.78331 3.94967 4.07905 4.18334 4.25701 4.35077 4.37654 4.64503 4.70692 4.71930 4.74555 4.77235 4.90042 4.97592 5.03052 5.10437 5.12630 5.19436 5.27566 5.34029 5.44075 5.52628 5.53275 5.70974 5.84702 6.33214 6.41584 7.08781 7.12046 7.80225 8.43721 9.23802 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023907 B = 0.001843 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.926605 B =15190.794873 C =15664.010311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.629 5.629 10 C 0.147 3.853 11 C -0.120 4.120 12 C -0.085 4.085 13 H 0.077 0.923 14 C -0.099 4.099 15 C 0.122 3.878 16 N -0.701 5.701 17 C 0.549 3.451 18 O -0.577 6.577 19 C -0.178 4.178 20 C -0.041 4.041 21 C -0.106 4.106 22 C -0.047 4.047 23 C -0.098 4.098 24 Cl -0.052 7.052 25 C 0.130 3.870 26 F -0.131 7.131 27 C 0.132 3.868 28 H 0.247 0.753 29 H 0.072 0.928 30 H -0.019 1.019 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.419 0.581 38 H 0.178 0.822 39 H 0.194 0.806 40 H 0.179 0.821 41 H 0.027 0.973 42 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.004 -29.811 13.512 32.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.355 5.355 10 C 0.023 3.977 11 C -0.158 4.158 12 C -0.104 4.104 13 H 0.095 0.905 14 C -0.136 4.136 15 C -0.001 4.001 16 N -0.354 5.354 17 C 0.337 3.663 18 O -0.458 6.458 19 C -0.182 4.182 20 C -0.060 4.060 21 C -0.123 4.123 22 C -0.066 4.066 23 C -0.126 4.126 24 Cl -0.023 7.023 25 C 0.109 3.891 26 F -0.109 7.109 27 C 0.007 3.993 28 H 0.057 0.943 29 H 0.090 0.910 30 H -0.001 1.001 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.258 0.742 38 H 0.196 0.804 39 H 0.211 0.789 40 H 0.196 0.804 41 H 0.045 0.955 42 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 3.521 -29.548 12.673 32.344 hybrid contribution 0.865 1.245 -0.873 1.749 sum 4.386 -28.304 11.800 30.977 Atomic orbital electron populations 1.70047 1.06085 1.25079 1.58528 1.25635 0.96718 1.00943 1.02764 0.85135 0.77159 0.78797 0.78129 1.20824 1.21639 1.20118 1.19406 0.90884 0.84130 1.42705 0.90697 1.44861 1.03008 1.00951 1.86699 1.21786 0.83828 0.95793 0.96339 1.22866 0.97842 0.94858 1.00233 1.22012 0.94740 0.93876 0.99791 0.90508 1.21636 0.98184 0.95154 0.98663 1.21359 0.98277 0.86647 0.93850 1.45680 1.37303 1.26846 1.25550 1.18368 0.80041 0.82667 0.85263 1.90854 1.52971 1.75442 1.26485 1.20009 1.01146 0.97449 0.99640 1.21810 0.96770 0.97910 0.89487 1.21701 0.96603 0.92484 1.01550 1.21699 0.92656 1.00102 0.92126 1.21154 0.98484 0.94382 0.98542 1.98401 1.51450 1.59772 1.92697 1.17880 0.93004 0.95367 0.82891 1.91565 1.78583 1.94924 1.45865 1.21583 0.95365 0.85145 0.97177 0.94293 0.91011 1.00083 0.89473 0.91048 0.90206 0.87798 0.91878 0.93313 0.74160 0.80437 0.78934 0.80384 0.95489 0.97469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.19 10.09 21.65 0.22 -56.97 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 3 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.24 -14.04 10.27 84.03 0.86 -13.17 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.63 -33.25 3.39 -691.98 -2.35 -35.60 16 10 C 0.15 7.28 5.89 86.85 0.51 7.79 16 11 C -0.12 -4.06 6.54 31.99 0.21 -3.86 16 12 C -0.08 -2.61 2.95 -9.61 -0.03 -2.63 16 13 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 14 C -0.10 -2.01 4.73 30.59 0.14 -1.87 16 15 C 0.12 2.83 5.54 86.38 0.48 3.31 16 16 N -0.70 -12.75 5.51 -466.12 -2.57 -15.32 16 17 C 0.55 13.68 7.77 86.74 0.67 14.35 16 18 O -0.58 -20.79 15.34 -3.94 -0.06 -20.85 16 19 C -0.18 -3.26 5.88 -20.06 -0.12 -3.38 16 20 C -0.04 -0.30 9.54 22.52 0.21 -0.08 16 21 C -0.11 -0.31 10.03 22.23 0.22 -0.09 16 22 C -0.05 -0.32 9.82 22.34 0.22 -0.10 16 23 C -0.10 -1.52 6.32 22.33 0.14 -1.38 16 24 Cl -0.05 -0.86 28.61 -2.72 -0.08 -0.94 16 25 C 0.13 2.86 7.26 22.70 0.16 3.02 16 26 F -0.13 -3.94 15.12 44.97 0.68 -3.26 16 27 C 0.13 5.52 6.10 86.73 0.53 6.04 16 28 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.07 4.03 5.87 -2.39 -0.01 4.01 16 30 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 31 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.07 2.29 8.05 -2.39 -0.02 2.27 16 33 H 0.08 1.57 8.00 -2.39 -0.02 1.55 16 34 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 1.41 7.58 -2.38 -0.02 1.39 16 37 H 0.42 3.80 6.50 -92.71 -0.60 3.20 16 38 H 0.18 -0.03 6.40 -2.91 -0.02 -0.04 16 39 H 0.19 -1.04 8.06 -2.92 -0.02 -1.07 16 40 H 0.18 0.13 8.06 -2.91 -0.02 0.11 16 41 H 0.03 1.10 7.73 -2.39 -0.02 1.08 16 42 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 Total: -1.00 -82.72 364.31 3.02 -79.70 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: 0.45 Total: 0.16 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 4.69 Total: 4.47 kcal Atomic # 7 Polarization: -103.19 SS G_CDS: -4.70 Total: -107.89 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.06 Total: -20.85 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.68 Total: -3.26 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -82.72 3.02 -79.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267569997.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.355 kcal (2) G-P(sol) polarization free energy of solvation -82.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds