Wall clock time and date at job start Sat Apr 11 2020 05:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20325 * 2 1 4 4 C 1.38431 * 114.91868 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.53757 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.46804 * 104.07690 * 5 4 3 7 7 C 1.47478 * 111.00269 * 269.17032 * 6 5 4 8 8 C 1.53505 * 87.93567 * 221.29740 * 7 6 5 9 9 N 1.46500 * 114.34353 * 139.68283 * 8 7 6 10 10 C 1.34778 * 120.00113 * 111.08095 * 9 8 7 11 11 O 1.21288 * 119.99577 * 359.97438 * 10 9 8 12 12 C 1.50694 * 120.00194 * 180.02562 * 10 9 8 13 13 S 1.81002 * 109.47127 * 179.97438 * 12 10 9 14 14 C 1.76204 * 100.00098 * 179.97438 * 13 12 10 15 15 H 1.08006 * 119.99958 * 359.97438 * 14 13 12 16 16 C 1.38800 * 120.00371 * 180.02562 * 14 13 12 17 17 N 1.31631 * 119.99381 * 359.97438 * 16 14 13 18 18 Si 1.86790 * 120.00198 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47372 * 60.00059 * 18 16 14 20 20 H 1.48501 * 109.47298 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47684 * 300.00012 * 18 16 14 22 22 C 1.47478 * 110.99871 * 173.20147 * 6 5 4 23 23 C 1.33390 * 114.92073 * 0.02562 * 4 3 2 24 24 C 1.50698 * 125.20161 * 179.97438 * 23 4 3 25 25 S 1.75878 * 109.59515 * 0.24212 * 23 4 3 26 26 H 1.09007 * 109.46691 * 90.00163 * 1 2 3 27 27 H 1.08995 * 109.47342 * 209.99815 * 1 2 3 28 28 H 1.09000 * 109.46947 * 330.00405 * 1 2 3 29 29 H 1.07990 * 122.54214 * 0.02562 * 3 2 1 30 30 H 1.08993 * 109.47189 * 224.07441 * 5 4 3 31 31 H 1.09002 * 109.47467 * 344.08034 * 5 4 3 32 32 H 1.09002 * 113.47467 * 336.06976 * 7 6 5 33 33 H 1.09002 * 113.47704 * 106.52854 * 7 6 5 34 34 H 1.09000 * 114.17531 * 272.37503 * 8 7 6 35 35 H 0.97006 * 120.00510 * 291.07844 * 9 8 7 36 36 H 1.09004 * 109.47044 * 299.99156 * 12 10 9 37 37 H 1.08999 * 109.47676 * 59.99577 * 12 10 9 38 38 H 0.97009 * 119.99642 * 180.02562 * 17 16 14 39 39 H 1.09001 * 113.47928 * 253.47330 * 22 6 5 40 40 H 1.09001 * 113.47774 * 23.87640 * 22 6 5 41 41 H 1.08995 * 109.47119 * 84.43540 * 24 23 4 42 42 H 1.09006 * 109.46824 * 324.43754 * 24 23 4 43 43 H 1.08997 * 109.47299 * 204.44126 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 -0.0006 5 6 4.6624 1.9481 -0.0012 6 7 5.2428 2.0785 1.3419 7 6 4.4840 3.0480 2.1539 8 6 5.8268 3.5764 2.6774 9 7 5.8931 5.0342 2.8065 10 6 5.9488 5.6007 4.0282 11 8 5.9434 4.9035 5.0207 12 6 6.0164 7.1002 4.1610 13 16 6.0798 7.5484 5.9135 14 6 6.1524 9.3038 5.7780 15 1 6.1486 9.7708 4.8042 16 6 6.2155 10.0862 6.9227 17 7 6.2207 9.5169 8.1095 18 14 6.2932 11.9470 6.7790 19 1 5.0829 12.4400 6.0738 20 1 6.3531 12.5463 8.1364 21 1 7.5048 12.3343 6.0126 22 6 6.3623 3.0386 1.3430 23 6 3.9751 -0.4479 -0.0016 24 6 5.3860 -0.9772 -0.0029 25 16 2.5210 -1.4372 -0.0088 26 1 -0.3633 0.0000 -1.0278 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.8670 2.0894 0.0004 30 1 5.4505 1.7126 -0.7163 31 1 4.1844 2.8863 -0.2831 32 1 3.9332 3.7760 1.5584 33 1 3.8702 2.5823 2.9250 34 1 6.2028 3.0492 3.5542 35 1 5.8971 5.5918 2.0128 36 1 6.9105 7.4695 3.6587 37 1 5.1327 7.5458 3.7042 38 1 6.2644 10.0638 8.9096 39 1 7.3405 2.5650 1.4268 40 1 6.3133 3.7635 0.5305 41 1 5.7619 -1.0121 1.0196 42 1 6.0194 -0.3217 -0.6007 43 1 5.3973 -1.9805 -0.4287 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267636483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:20 Heat of formation + Delta-G solvation = 1.867145 kcal Electronic energy + Delta-G solvation = -23510.230753 eV Core-core repulsion = 20001.189013 eV Total energy + Delta-G solvation = -3509.041740 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.68260 -40.12999 -38.99925 -35.16731 -34.57276 -34.09449 -31.58871 -30.52231 -29.56884 -27.66229 -26.95499 -25.86752 -24.88053 -22.42339 -21.73567 -21.19739 -19.77797 -19.28209 -17.99766 -17.92200 -17.61077 -16.86914 -16.72631 -16.32447 -16.15020 -16.02832 -15.36301 -15.03783 -14.84139 -14.58726 -14.24077 -14.14773 -14.11929 -13.84741 -13.77159 -13.57012 -13.53193 -13.16032 -13.07883 -12.86034 -12.62931 -12.53017 -12.42876 -12.30329 -12.00370 -11.80042 -11.70748 -11.53408 -11.11936 -11.01216 -10.26564 -10.09826 -9.93287 -9.35190 -9.19683 -8.65747 -8.33540 -6.11672 0.08266 0.69585 1.06234 1.27370 1.44630 1.47370 1.56623 1.58980 1.71216 2.24365 2.29472 3.00468 3.08727 3.33919 3.47940 3.81892 3.87555 3.94039 3.96818 4.08255 4.22030 4.30555 4.32840 4.38285 4.47656 4.52249 4.53048 4.63781 4.70369 4.71920 4.77869 4.82113 4.83528 4.96679 5.05166 5.17526 5.18237 5.29045 5.42527 5.45475 5.51622 5.67340 6.00500 6.20530 6.50701 7.07582 7.25201 8.75330 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.024529 B = 0.001769 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.222451 B =15824.361576 C =16309.618684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.191 4.191 3 C -0.142 4.142 4 C -0.112 4.112 5 C 0.085 3.915 6 N -0.467 5.467 7 C -0.008 4.008 8 C 0.113 3.887 9 N -0.699 5.699 10 C 0.536 3.464 11 O -0.565 6.565 12 C -0.129 4.129 13 S -0.154 6.154 14 C -0.546 4.546 15 H 0.084 0.916 16 C 0.012 3.988 17 N -0.911 5.911 18 Si 0.999 3.001 19 H -0.262 1.262 20 H -0.280 1.280 21 H -0.261 1.261 22 C 0.006 3.994 23 C -0.166 4.166 24 C -0.074 4.074 25 S 0.074 5.926 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.143 0.857 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.418 0.582 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.271 0.729 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 -18.871 -25.598 32.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.308 4.308 3 C -0.172 4.172 4 C -0.124 4.124 5 C -0.045 4.045 6 N -0.190 5.190 7 C -0.138 4.138 8 C 0.007 3.993 9 N -0.353 5.353 10 C 0.322 3.678 11 O -0.442 6.442 12 C -0.280 4.280 13 S 0.073 5.927 14 C -0.694 4.694 15 H 0.102 0.898 16 C -0.193 4.193 17 N -0.548 5.548 18 Si 0.820 3.180 19 H -0.186 1.186 20 H -0.205 1.205 21 H -0.186 1.186 22 C -0.123 4.123 23 C -0.284 4.284 24 C -0.132 4.132 25 S 0.339 5.661 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.161 0.839 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.256 0.744 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.293 -22.298 -23.608 33.078 hybrid contribution -0.021 4.107 -1.214 4.283 sum -6.314 -18.192 -24.823 31.416 Atomic orbital electron populations 1.20399 0.86467 1.03683 1.03493 1.24667 1.00924 0.95304 1.09903 1.20128 0.92604 0.99719 1.04728 1.18696 0.94259 0.94182 1.05262 1.21305 0.95942 0.95751 0.91469 1.68913 1.05509 1.33294 1.11268 1.24399 0.96908 0.94366 0.98131 1.22521 0.97378 0.79989 0.99389 1.45641 1.75011 1.07202 1.07460 1.20120 0.74630 0.89383 0.83620 1.90705 1.50024 1.64702 1.38813 1.23375 1.06909 0.94987 1.02757 1.85624 1.96815 1.07057 1.03211 1.23176 1.58704 0.91297 0.96198 0.89792 1.26145 0.93818 1.05383 0.93948 1.70186 1.47920 1.38216 0.98465 0.85000 0.79507 0.75760 0.77708 1.18640 1.20530 1.18594 1.24252 0.97776 0.94646 0.95616 1.24509 0.99551 0.95869 1.08498 1.20303 0.88810 1.01002 1.03122 1.84187 0.97216 1.10292 1.74439 0.89710 0.90975 0.89942 0.83919 0.88430 0.91696 0.89329 0.91407 0.88345 0.74377 0.86974 0.87093 0.92035 0.88007 0.88134 0.90752 0.89693 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.38 71.24 0.74 -0.21 16 2 C -0.19 -3.17 6.51 24.59 0.16 -3.01 16 3 C -0.14 -2.42 9.81 21.22 0.21 -2.22 16 4 C -0.11 -1.92 5.36 -20.92 -0.11 -2.03 16 5 C 0.09 1.16 4.56 85.56 0.39 1.55 16 6 N -0.47 -7.78 6.32 -932.63 -5.89 -13.67 16 7 C -0.01 -0.15 7.50 83.57 0.63 0.47 16 8 C 0.11 2.45 4.59 45.44 0.21 2.66 16 9 N -0.70 -16.15 5.39 -441.70 -2.38 -18.53 16 10 C 0.54 19.09 7.85 87.65 0.69 19.77 16 11 O -0.56 -25.95 15.46 -3.05 -0.05 -26.00 16 12 C -0.13 -4.93 6.16 71.23 0.44 -4.49 16 13 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 14 C -0.55 -30.87 9.50 67.95 0.65 -30.23 16 15 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 16 C 0.01 0.67 5.49 84.86 0.47 1.13 16 17 N -0.91 -55.96 13.22 21.65 0.29 -55.68 16 18 Si 1.00 43.23 29.55 68.60 2.03 45.26 16 19 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 22 C 0.01 0.09 7.47 83.57 0.62 0.71 16 23 C -0.17 -2.86 6.50 24.59 0.16 -2.70 16 24 C -0.07 -0.99 9.97 71.24 0.71 -0.28 16 25 S 0.07 1.25 23.31 -56.49 -1.32 -0.06 16 26 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 29 H 0.14 2.09 8.06 -2.92 -0.02 2.06 16 30 H 0.10 1.05 7.23 -2.39 -0.02 1.04 16 31 H 0.06 0.74 7.29 -2.39 -0.02 0.73 16 32 H 0.09 1.43 7.45 -2.39 -0.02 1.41 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.10 2.80 7.45 -2.39 -0.02 2.78 16 35 H 0.42 6.38 8.76 -92.70 -0.81 5.57 16 36 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 37 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 38 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 40 H 0.10 0.88 7.90 -2.39 -0.02 0.86 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 0.93 7.13 -2.38 -0.02 0.91 16 43 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -77.01 387.45 -2.32 -79.34 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.21 Total: 17.88 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 5.95 Total: -18.87 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -7.99 Total: -87.89 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.05 Total: -26.00 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -7.24 SS G_CDS: -2.48 Total: -9.72 kcal Total: -77.01 -2.32 -79.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267636483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.203 kcal (2) G-P(sol) polarization free energy of solvation -77.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds