Wall clock time and date at job start Sat Apr 11 2020 05:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00090 * 2 1 4 4 H 1.48505 * 109.46994 * 239.99765 * 3 2 1 5 5 H 1.48497 * 109.47355 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47004 * 120.00045 * 3 2 1 7 7 C 1.38810 * 119.99433 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99788 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00299 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99920 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47024 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46935 * 294.99953 * 11 10 9 13 13 N 1.46499 * 109.47193 * 55.00011 * 11 10 9 14 14 C 1.34777 * 119.99665 * 205.27836 * 13 11 10 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 11 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 11 17 17 C 1.50698 * 109.46944 * 179.97438 * 16 14 13 18 18 C 1.38271 * 119.97645 * 269.71994 * 17 16 14 19 19 C 1.38215 * 120.06153 * 179.76664 * 18 17 16 20 20 C 1.38317 * 120.01297 * 0.50660 * 19 18 17 21 21 Cl 1.73598 * 120.02431 * 179.72210 * 20 19 18 22 22 C 1.38552 * 119.95248 * 359.74899 * 20 19 18 23 23 F 1.35095 * 120.03285 * 180.02562 * 22 20 19 24 24 C 1.38202 * 119.97777 * 90.00012 * 17 16 14 25 25 C 1.52999 * 109.46944 * 175.00215 * 11 10 9 26 26 C 1.53000 * 117.49472 * 248.74394 * 25 11 10 27 27 C 1.53003 * 117.49581 * 180.08728 * 25 11 10 28 28 H 0.97005 * 119.99444 * 359.97438 * 1 2 3 29 29 H 0.96994 * 119.99935 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47175 * 60.00108 * 10 9 7 31 31 H 1.08997 * 109.46976 * 300.00099 * 10 9 7 32 32 H 0.97001 * 119.99790 * 24.99549 * 13 11 10 33 33 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 34 34 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 35 35 H 1.07993 * 119.96331 * 0.02735 * 18 17 16 36 36 H 1.08001 * 119.99161 * 180.23580 * 19 18 17 37 37 H 1.07993 * 120.00559 * 359.95193 * 24 17 16 38 38 H 1.08999 * 115.55354 * 34.41708 * 25 11 10 39 39 H 1.08995 * 117.49983 * 0.02562 * 26 25 11 40 40 H 1.09001 * 117.49622 * 145.02295 * 26 25 11 41 41 H 1.09002 * 117.49284 * 214.97689 * 27 25 11 42 42 H 1.08990 * 117.49881 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.4978 -4.8134 0.9328 13 7 0.1437 -4.6763 -1.1299 14 6 -1.0828 -5.2324 -1.0756 15 8 -1.4231 -5.8557 -0.0924 16 6 -2.0314 -5.0796 -2.2366 17 6 -3.3240 -5.7892 -1.9259 18 6 -3.4845 -7.1173 -2.2756 19 6 -4.6675 -7.7712 -1.9871 20 6 -5.6963 -7.0943 -1.3574 21 17 -7.1850 -7.9133 -1.0015 22 6 -5.5381 -5.7620 -1.0115 23 9 -6.5418 -5.0996 -0.3959 24 6 -4.3504 -5.1104 -1.2968 25 6 1.8244 -6.1412 -0.1245 26 6 1.6657 -6.9264 -1.4280 27 6 1.0014 -7.4309 -0.1445 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6846 -3.7146 0.8905 31 1 2.6846 -3.7146 -0.8894 32 1 0.4159 -4.1777 -1.9162 33 1 -2.2294 -4.0214 -2.4072 34 1 -1.5845 -5.5143 -3.1306 35 1 -2.6830 -7.6452 -2.7708 36 1 -4.7902 -8.8096 -2.2574 37 1 -4.2258 -4.0721 -1.0273 38 1 2.7969 -6.1724 0.3667 39 1 1.0197 -6.5013 -2.1962 40 1 2.5338 -7.4745 -1.7943 41 1 1.4328 -8.3106 0.3331 42 1 -0.0818 -7.3379 -0.0678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269120931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:28 Heat of formation + Delta-G solvation = -25.264434 kcal Electronic energy + Delta-G solvation = -26825.282502 eV Core-core repulsion = 22746.807366 eV Total energy + Delta-G solvation = -4078.475136 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.05592 -40.33479 -39.18532 -37.21866 -36.68289 -34.94314 -33.36564 -32.77666 -31.20038 -30.88431 -28.67646 -27.23626 -24.11327 -23.23879 -22.45398 -22.28849 -21.52016 -20.57288 -19.68803 -17.73041 -17.37708 -16.94228 -16.83402 -16.60569 -15.99673 -15.85460 -15.75219 -14.81594 -14.57492 -14.24715 -13.94372 -13.90224 -13.57976 -13.44458 -13.22820 -13.06074 -12.95989 -12.45473 -12.22167 -11.87501 -11.74846 -11.61483 -11.54638 -11.35708 -11.20358 -11.12573 -10.93882 -10.84387 -10.29404 -10.15975 -9.84782 -9.69480 -9.59593 -9.15397 -8.96307 -8.78201 -8.69688 -7.01754 -5.83471 -3.13213 0.72793 0.91184 1.79569 2.78934 3.08936 3.39456 3.44547 3.45347 3.53890 3.88500 4.02374 4.34924 4.43276 4.51538 4.81172 4.85773 4.95152 5.00416 5.13302 5.16108 5.18361 5.29195 5.45963 5.49294 5.55035 5.63305 5.72285 5.75548 5.79122 5.81729 5.97450 5.98663 6.17865 6.18836 6.27105 6.43821 6.47447 6.49282 6.64727 6.88105 7.62907 7.76498 8.34533 8.44179 9.46539 10.01556 10.37116 11.38755 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.002881 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.925971 B = 9718.188381 C =11614.120941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.169 3.831 12 H 0.091 0.909 13 N -0.707 5.707 14 C 0.517 3.483 15 O -0.535 6.535 16 C -0.110 4.110 17 C -0.023 4.023 18 C -0.105 4.105 19 C -0.082 4.082 20 C -0.077 4.077 21 Cl -0.057 7.057 22 C 0.112 3.888 23 F -0.127 7.127 24 C -0.126 4.126 25 C -0.160 4.160 26 C -0.177 4.177 27 C -0.187 4.187 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.033 0.967 31 H 0.026 0.974 32 H 0.406 0.594 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 -17.554 -7.883 20.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.064 3.936 12 H 0.109 0.891 13 N -0.358 5.358 14 C 0.303 3.697 15 O -0.412 6.412 16 C -0.150 4.150 17 C -0.024 4.024 18 C -0.123 4.123 19 C -0.101 4.101 20 C -0.105 4.105 21 Cl -0.029 7.029 22 C 0.092 3.908 23 F -0.106 7.106 24 C -0.144 4.144 25 C -0.180 4.180 26 C -0.214 4.214 27 C -0.224 4.224 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.241 0.759 33 H 0.132 0.868 34 H 0.125 0.875 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.265 -17.902 -7.107 20.586 hybrid contribution 0.103 1.298 -0.129 1.308 sum -7.162 -16.604 -7.236 19.477 Atomic orbital electron populations 1.69650 1.05093 1.25851 1.57351 1.24740 0.95522 0.97701 1.02765 0.86263 0.78525 0.83480 0.77854 1.21266 1.21686 1.21257 1.19161 0.91005 0.84046 1.43248 0.91200 1.42327 1.05950 0.99706 1.89628 1.20914 0.93065 0.85109 0.98955 1.20741 0.90150 0.92752 0.89936 0.89142 1.45968 1.14306 1.54618 1.20907 1.20251 0.82114 0.79021 0.88303 1.90662 1.75976 1.41177 1.33398 1.20763 0.92183 1.03578 0.98466 1.19228 0.93813 0.93702 0.95620 1.21010 0.97104 0.93748 1.00447 1.20880 0.91557 1.00342 0.97328 1.20968 0.90910 0.92176 1.06440 1.98377 1.32369 1.78405 1.93704 1.17333 0.86619 0.89058 0.97784 1.91543 1.58657 1.80283 1.80086 1.21072 0.91318 1.01869 1.00191 1.22694 1.00783 0.92533 1.01961 1.22873 1.02929 1.04022 0.91579 1.23330 1.01555 0.96778 1.00700 0.93417 0.78040 0.94891 0.95584 0.75922 0.86847 0.87461 0.84497 0.84051 0.83495 0.87359 0.89068 0.89585 0.89843 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.11 13.06 55.49 0.72 -26.39 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.50 9.99 -15.06 -0.15 -6.65 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 N -0.73 -17.27 5.43 -59.90 -0.33 -17.60 16 10 C 0.15 2.72 5.80 -4.04 -0.02 2.70 16 11 C 0.17 2.65 2.59 -67.93 -0.18 2.47 16 12 H 0.09 1.66 7.57 -51.93 -0.39 1.26 16 13 N -0.71 -9.83 3.04 -53.81 -0.16 -9.99 16 14 C 0.52 7.10 6.68 -10.99 -0.07 7.03 16 15 O -0.53 -9.02 13.07 5.55 0.07 -8.95 16 16 C -0.11 -1.11 5.83 -29.04 -0.17 -1.28 16 17 C -0.02 -0.25 4.37 -104.62 -0.46 -0.71 16 18 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 19 C -0.08 -0.79 9.83 -39.56 -0.39 -1.18 16 20 C -0.08 -0.89 6.33 -39.44 -0.25 -1.14 16 21 Cl -0.06 -0.62 28.62 -51.86 -1.48 -2.11 16 22 C 0.11 1.43 7.28 -39.39 -0.29 1.15 16 23 F -0.13 -1.75 16.84 2.25 0.04 -1.72 16 24 C -0.13 -1.54 9.68 -39.52 -0.38 -1.93 16 25 C -0.16 -2.12 5.71 -90.62 -0.52 -2.63 16 26 C -0.18 -2.03 9.74 -26.69 -0.26 -2.29 16 27 C -0.19 -2.39 9.83 -26.69 -0.26 -2.65 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.39 9.67 7.33 -40.82 -0.30 9.37 16 30 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.41 5.29 8.60 -40.82 -0.35 4.94 16 33 H 0.11 1.10 8.09 -51.93 -0.42 0.68 16 34 H 0.11 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.15 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.11 1.35 8.11 -51.93 -0.42 0.93 16 39 H 0.09 1.01 6.68 -51.93 -0.35 0.66 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.12 1.73 5.03 -51.93 -0.26 1.47 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -31.09 372.17 -9.85 -40.94 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -5.42 Total: 12.37 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -3.88 Total: -8.90 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.24 Total: -53.98 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.07 Total: -8.95 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.09 -9.85 -40.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269120931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.671 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds