Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00090 * 2 1 4 4 H 1.48505 * 109.46994 * 239.99765 * 3 2 1 5 5 H 1.48497 * 109.47355 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47004 * 120.00045 * 3 2 1 7 7 C 1.38810 * 119.99433 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99788 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00299 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99920 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47024 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46935 * 294.99953 * 11 10 9 13 13 N 1.46499 * 109.47193 * 55.00011 * 11 10 9 14 14 C 1.34777 * 119.99665 * 205.27836 * 13 11 10 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 11 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 11 17 17 C 1.50698 * 109.46944 * 179.97438 * 16 14 13 18 18 C 1.38271 * 119.97645 * 269.71994 * 17 16 14 19 19 C 1.38215 * 120.06153 * 179.76664 * 18 17 16 20 20 C 1.38317 * 120.01297 * 0.50660 * 19 18 17 21 21 Cl 1.73598 * 120.02431 * 179.72210 * 20 19 18 22 22 C 1.38552 * 119.95248 * 359.74899 * 20 19 18 23 23 F 1.35095 * 120.03285 * 180.02562 * 22 20 19 24 24 C 1.38202 * 119.97777 * 90.00012 * 17 16 14 25 25 C 1.52999 * 109.46944 * 175.00215 * 11 10 9 26 26 C 1.53000 * 117.49472 * 248.74394 * 25 11 10 27 27 C 1.53003 * 117.49581 * 180.08728 * 25 11 10 28 28 H 0.97005 * 119.99444 * 359.97438 * 1 2 3 29 29 H 0.96994 * 119.99935 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47175 * 60.00108 * 10 9 7 31 31 H 1.08997 * 109.46976 * 300.00099 * 10 9 7 32 32 H 0.97001 * 119.99790 * 24.99549 * 13 11 10 33 33 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 34 34 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 35 35 H 1.07993 * 119.96331 * 0.02735 * 18 17 16 36 36 H 1.08001 * 119.99161 * 180.23580 * 19 18 17 37 37 H 1.07993 * 120.00559 * 359.95193 * 24 17 16 38 38 H 1.08999 * 115.55354 * 34.41708 * 25 11 10 39 39 H 1.08995 * 117.49983 * 0.02562 * 26 25 11 40 40 H 1.09001 * 117.49622 * 145.02295 * 26 25 11 41 41 H 1.09002 * 117.49284 * 214.97689 * 27 25 11 42 42 H 1.08990 * 117.49881 * 359.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8197 0.0012 12 1 0.4978 -4.8134 0.9328 13 7 0.1437 -4.6763 -1.1299 14 6 -1.0828 -5.2324 -1.0756 15 8 -1.4231 -5.8557 -0.0924 16 6 -2.0314 -5.0796 -2.2366 17 6 -3.3240 -5.7892 -1.9259 18 6 -3.4845 -7.1173 -2.2756 19 6 -4.6675 -7.7712 -1.9871 20 6 -5.6963 -7.0943 -1.3574 21 17 -7.1850 -7.9133 -1.0015 22 6 -5.5381 -5.7620 -1.0115 23 9 -6.5418 -5.0996 -0.3959 24 6 -4.3504 -5.1104 -1.2968 25 6 1.8244 -6.1412 -0.1245 26 6 1.6657 -6.9264 -1.4280 27 6 1.0014 -7.4309 -0.1445 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6846 -3.7146 0.8905 31 1 2.6846 -3.7146 -0.8894 32 1 0.4159 -4.1777 -1.9162 33 1 -2.2294 -4.0214 -2.4072 34 1 -1.5845 -5.5143 -3.1306 35 1 -2.6830 -7.6452 -2.7708 36 1 -4.7902 -8.8096 -2.2574 37 1 -4.2258 -4.0721 -1.0273 38 1 2.7969 -6.1724 0.3667 39 1 1.0197 -6.5013 -2.1962 40 1 2.5338 -7.4745 -1.7943 41 1 1.4328 -8.3106 0.3331 42 1 -0.0818 -7.3379 -0.0678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269120931.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -42.349540 kcal Electronic energy + Delta-G solvation = -26826.023368 eV Core-core repulsion = 22746.807366 eV Total energy + Delta-G solvation = -4079.216002 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.05466 -41.39274 -40.10365 -38.30937 -37.57861 -36.51661 -34.75140 -33.74202 -32.90097 -31.74411 -30.07079 -28.31725 -25.90324 -24.08569 -23.53334 -23.31140 -22.87002 -21.61415 -20.83019 -19.26774 -18.58809 -17.98570 -17.84671 -17.47849 -17.13027 -17.03350 -16.83594 -16.47880 -15.67017 -15.30526 -15.18983 -15.04051 -14.88170 -14.66610 -14.47042 -14.34481 -13.96475 -13.62957 -13.29892 -13.10030 -12.85828 -12.73130 -12.67569 -12.63772 -12.44523 -12.39265 -12.17946 -12.11118 -11.97402 -11.82090 -11.23175 -10.96317 -10.83478 -10.69522 -10.01221 -9.88061 -9.64746 -8.99143 -7.93132 -5.21934 -0.13226 0.06650 0.93814 1.49662 1.51609 1.57659 1.72054 2.14967 2.55619 2.58096 3.00110 3.02989 3.41430 3.49281 3.64452 3.67007 3.95388 4.05439 4.08684 4.14289 4.16927 4.23451 4.39133 4.48179 4.51908 4.55067 4.67145 4.72406 4.82656 4.90400 4.92983 4.94187 5.02195 5.11884 5.19906 5.32795 5.36519 5.45777 5.52112 5.65576 5.66868 6.27730 6.66987 7.35688 7.36177 8.09232 8.33365 9.29375 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.002881 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.925971 B = 9718.188381 C =11614.120941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.970 3.030 4 H -0.275 1.275 5 H -0.299 1.299 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.741 5.741 10 C 0.150 3.850 11 C 0.182 3.818 12 H 0.056 0.944 13 N -0.704 5.704 14 C 0.515 3.485 15 O -0.569 6.569 16 C -0.102 4.102 17 C -0.031 4.031 18 C -0.096 4.096 19 C -0.077 4.077 20 C -0.086 4.086 21 Cl -0.056 7.056 22 C 0.086 3.914 23 F -0.141 7.141 24 C -0.143 4.143 25 C -0.172 4.172 26 C -0.155 4.155 27 C -0.189 4.189 28 H 0.250 0.750 29 H 0.375 0.625 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.411 0.589 33 H 0.116 0.884 34 H 0.148 0.852 35 H 0.170 0.830 36 H 0.171 0.829 37 H 0.137 0.863 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.274 -19.211 -9.743 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.800 3.200 4 H -0.201 1.201 5 H -0.226 1.226 6 H -0.209 1.209 7 C -0.375 4.375 8 H 0.095 0.905 9 N -0.385 5.385 10 C 0.023 3.977 11 C 0.076 3.924 12 H 0.074 0.926 13 N -0.355 5.355 14 C 0.303 3.697 15 O -0.448 6.448 16 C -0.141 4.141 17 C -0.031 4.031 18 C -0.114 4.114 19 C -0.096 4.096 20 C -0.113 4.113 21 Cl -0.027 7.027 22 C 0.066 3.934 23 F -0.120 7.120 24 C -0.162 4.162 25 C -0.192 4.192 26 C -0.192 4.192 27 C -0.226 4.226 28 H 0.058 0.942 29 H 0.207 0.793 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.248 0.752 33 H 0.134 0.866 34 H 0.166 0.834 35 H 0.187 0.813 36 H 0.188 0.812 37 H 0.155 0.845 38 H 0.135 0.865 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.518 -19.583 -8.985 22.241 hybrid contribution -0.396 1.729 0.486 1.839 sum -5.914 -17.854 -8.499 20.639 Atomic orbital electron populations 1.69806 1.06497 1.25980 1.59364 1.25497 0.96296 1.00877 1.03727 0.85263 0.77183 0.79448 0.78138 1.20072 1.22557 1.20892 1.19566 0.91526 0.85164 1.41272 0.90493 1.42490 1.05660 1.00823 1.89493 1.21029 0.93480 0.83993 0.99200 1.20385 0.89567 0.93128 0.89320 0.92590 1.45916 1.14408 1.54749 1.20465 1.20840 0.82064 0.78033 0.88794 1.90656 1.76469 1.42711 1.35000 1.20794 0.90991 1.04158 0.98198 1.19400 0.93606 0.94551 0.95577 1.21396 0.97715 0.93004 0.99290 1.21261 0.90787 1.01518 0.95992 1.21164 0.91617 0.91816 1.06738 1.98373 1.32436 1.78143 1.93754 1.17588 0.86738 0.89943 0.99088 1.91495 1.59236 1.80700 1.80576 1.21153 0.92013 1.01830 1.01167 1.22592 1.00917 0.91308 1.04350 1.22977 1.03171 1.02332 0.90712 1.23260 1.00429 0.96727 1.02179 0.94162 0.79262 0.95140 0.94037 0.75237 0.86578 0.83425 0.81304 0.81196 0.84483 0.86512 0.88364 0.87553 0.88604 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.16 13.06 21.65 0.28 -56.87 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 44.71 29.55 68.60 2.03 46.74 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.24 -12.89 9.99 84.03 0.84 -12.05 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.74 -35.07 5.43 -343.43 -1.87 -36.93 16 10 C 0.15 5.42 5.80 86.38 0.50 5.92 16 11 C 0.18 5.61 2.59 44.99 0.12 5.72 16 12 H 0.06 2.12 7.57 -2.39 -0.02 2.10 16 13 N -0.70 -18.90 3.04 -442.54 -1.35 -20.25 16 14 C 0.51 13.70 6.68 87.66 0.59 14.29 16 15 O -0.57 -19.24 13.07 -3.04 -0.04 -19.28 16 16 C -0.10 -1.88 5.83 29.10 0.17 -1.71 16 17 C -0.03 -0.63 4.37 -19.87 -0.09 -0.72 16 18 C -0.10 -1.57 9.70 22.27 0.22 -1.35 16 19 C -0.08 -1.31 9.83 22.28 0.22 -1.09 16 20 C -0.09 -1.92 6.33 22.36 0.14 -1.78 16 21 Cl -0.06 -1.19 28.62 -2.72 -0.08 -1.26 16 22 C 0.09 2.27 7.28 22.39 0.16 2.43 16 23 F -0.14 -4.12 16.84 44.97 0.76 -3.37 16 24 C -0.14 -3.60 9.68 22.31 0.22 -3.39 16 25 C -0.17 -4.25 5.71 -10.79 -0.06 -4.31 16 26 C -0.15 -3.04 9.74 30.62 0.30 -2.74 16 27 C -0.19 -4.47 9.83 30.62 0.30 -4.16 16 28 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 29 H 0.38 19.17 7.33 -92.71 -0.68 18.49 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.41 10.11 8.60 -92.71 -0.80 9.31 16 33 H 0.12 2.13 8.09 -2.39 -0.02 2.11 16 34 H 0.15 1.50 8.08 -2.39 -0.02 1.48 16 35 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 36 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 37 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 38 H 0.12 2.67 8.11 -2.39 -0.02 2.65 16 39 H 0.10 1.80 6.68 -2.39 -0.02 1.78 16 40 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.10 2.00 8.14 -2.39 -0.02 1.99 16 42 H 0.10 2.77 5.03 -2.39 -0.01 2.75 16 Total: -1.00 -68.29 372.17 3.42 -64.88 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: -0.40 Total: 34.77 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 4.09 Total: -8.42 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -2.93 Total: -114.06 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.04 Total: -19.28 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.76 Total: -3.37 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.26 kcal Total: -68.29 3.42 -64.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269120931.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.526 kcal (2) G-P(sol) polarization free energy of solvation -68.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds