Wall clock time and date at job start Sat Apr 11 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00107 * 2 1 4 4 H 1.48502 * 109.46919 * 269.99980 * 3 2 1 5 5 H 1.48495 * 109.47348 * 29.99625 * 3 2 1 6 6 H 1.48501 * 109.47372 * 149.99989 * 3 2 1 7 7 C 1.38814 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00296 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00122 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47461 * 185.01343 * 10 9 7 12 12 H 1.09003 * 109.99463 * 306.32888 * 11 10 9 13 13 C 1.54316 * 109.77377 * 67.47955 * 11 10 9 14 14 C 1.55154 * 102.86135 * 141.88739 * 13 11 10 15 15 C 1.54908 * 101.58455 * 324.30460 * 14 13 11 16 16 N 1.47020 * 109.88871 * 185.23350 * 11 10 9 17 17 C 1.34775 * 125.64917 * 61.67138 * 16 11 10 18 18 O 1.21285 * 119.99908 * 354.79884 * 17 16 11 19 19 C 1.50692 * 120.00273 * 174.79837 * 17 16 11 20 20 C 1.50700 * 109.47160 * 180.02562 * 19 17 16 21 21 C 1.38239 * 120.00426 * 265.01962 * 20 19 17 22 22 C 1.38223 * 120.05259 * 179.97438 * 21 20 19 23 23 C 1.38265 * 120.05706 * 359.71825 * 22 21 20 24 24 C 1.38278 * 120.01396 * 0.56065 * 23 22 21 25 25 Cl 1.73592 * 120.02932 * 179.72142 * 24 23 22 26 26 C 1.38401 * 120.01206 * 85.00030 * 20 19 17 27 27 F 1.35104 * 120.02647 * 359.97438 * 26 20 19 28 28 H 0.96998 * 119.99656 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99913 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47509 * 65.01158 * 10 9 7 31 31 H 1.09006 * 109.46968 * 305.01457 * 10 9 7 32 32 H 1.09005 * 110.92122 * 23.47681 * 13 11 10 33 33 H 1.09001 * 110.74728 * 260.21604 * 13 11 10 34 34 H 1.08998 * 111.00546 * 206.22962 * 14 13 11 35 35 H 1.09006 * 111.00262 * 82.38027 * 14 13 11 36 36 H 1.08993 * 110.36977 * 278.16861 * 15 14 13 37 37 H 1.09003 * 110.36498 * 155.84426 * 15 14 13 38 38 H 1.08994 * 109.47194 * 60.00192 * 19 17 16 39 39 H 1.08999 * 109.47394 * 300.00202 * 19 17 16 40 40 H 1.08000 * 119.97376 * 359.97438 * 21 20 19 41 41 H 1.07998 * 119.97413 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.99468 * 180.28207 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0685 -4.8170 -0.1255 12 1 0.3044 -4.7410 0.6482 13 6 0.4103 -4.7925 -1.5210 14 6 0.3092 -6.2981 -1.8817 15 6 1.6102 -6.8566 -1.2531 16 7 1.7804 -6.0973 -0.0010 17 6 2.4699 -6.5107 1.0808 18 8 2.6193 -5.7654 2.0259 19 6 3.0550 -7.8989 1.1161 20 6 3.7702 -8.1094 2.4258 21 6 5.1322 -7.8896 2.5127 22 6 5.7892 -8.0819 3.7136 23 6 5.0841 -8.4887 4.8312 24 6 3.7227 -8.7149 4.7458 25 17 2.8384 -9.2326 6.1470 26 6 3.0636 -8.5224 3.5418 27 9 1.7323 -8.7366 3.4581 28 1 -0.4849 0.8401 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6156 -3.7545 0.9320 31 1 2.7503 -3.6767 -0.8412 32 1 1.0389 -4.2653 -2.2387 33 1 -0.5803 -4.3402 -1.4728 34 1 0.3045 -6.4416 -2.9622 35 1 -0.5710 -6.7510 -1.4252 36 1 2.4566 -6.6860 -1.9184 37 1 1.5024 -7.9201 -1.0401 38 1 3.7603 -8.0170 0.2935 39 1 2.2553 -8.6330 1.0172 40 1 5.6835 -7.5674 1.6417 41 1 6.8532 -7.9094 3.7802 42 1 5.5977 -8.6342 5.7701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270136047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:33 Heat of formation + Delta-G solvation = -45.890904 kcal Electronic energy + Delta-G solvation = -27011.355085 eV Core-core repulsion = 22931.985518 eV Total energy + Delta-G solvation = -4079.369567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.13207 -40.28193 -39.26674 -37.39961 -36.74423 -34.49743 -33.18702 -31.60760 -31.28101 -30.68793 -28.89755 -27.76279 -25.05909 -23.48609 -23.09999 -22.28125 -21.93389 -20.57802 -18.93181 -17.92317 -17.35374 -17.07597 -16.73595 -16.51847 -16.14056 -15.79584 -14.96450 -14.78306 -14.51612 -14.38302 -13.86838 -13.65516 -13.58236 -13.33393 -13.25308 -13.12611 -12.81357 -12.78546 -12.48292 -12.18478 -11.94943 -11.71905 -11.67743 -11.42640 -11.22182 -11.10324 -10.90004 -10.80155 -10.54225 -10.43241 -10.01835 -9.80982 -9.62450 -9.09320 -8.92869 -8.78984 -8.44434 -6.84810 -5.70910 -2.98802 0.70892 0.76623 1.75248 2.73902 2.92834 3.27243 3.47382 3.52635 3.54967 3.84093 4.15484 4.45130 4.49813 4.59952 4.66818 4.71518 4.78917 4.91305 5.00715 5.04001 5.13395 5.32353 5.39287 5.44202 5.57358 5.58777 5.63164 5.66558 5.81482 5.83165 5.92838 5.99097 6.06319 6.10308 6.20561 6.38896 6.43725 6.57271 6.84247 7.06540 7.66131 7.76172 8.30176 8.48258 9.58945 10.16143 10.51641 11.52258 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012141 B = 0.002845 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.668579 B = 9838.640820 C =10951.151818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.233 4.233 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.146 3.854 11 C 0.131 3.869 12 H 0.075 0.925 13 C -0.120 4.120 14 C -0.135 4.135 15 C 0.098 3.902 16 N -0.612 5.612 17 C 0.526 3.474 18 O -0.518 6.518 19 C -0.098 4.098 20 C -0.086 4.086 21 C -0.073 4.073 22 C -0.116 4.116 23 C -0.084 4.084 24 C -0.074 4.074 25 Cl -0.053 7.053 26 C 0.126 3.874 27 F -0.124 7.124 28 H 0.254 0.746 29 H 0.383 0.617 30 H 0.035 0.965 31 H 0.019 0.981 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.318 -25.336 1.658 26.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.373 5.373 10 C 0.018 3.982 11 C 0.028 3.972 12 H 0.093 0.907 13 C -0.158 4.158 14 C -0.173 4.173 15 C -0.025 4.025 16 N -0.348 5.348 17 C 0.313 3.687 18 O -0.393 6.393 19 C -0.138 4.138 20 C -0.088 4.088 21 C -0.091 4.091 22 C -0.135 4.135 23 C -0.103 4.103 24 C -0.101 4.101 25 Cl -0.024 7.024 26 C 0.106 3.894 27 F -0.102 7.102 28 H 0.064 0.936 29 H 0.216 0.784 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.444 -24.892 2.386 26.393 hybrid contribution -0.236 0.902 0.095 0.937 sum 8.209 -23.990 2.481 25.477 Atomic orbital electron populations 1.69657 1.05064 1.25545 1.58118 1.24716 0.95538 0.97591 1.03232 0.86179 0.78703 0.83866 0.77418 1.21795 1.21774 1.20789 1.19210 0.90987 0.84042 1.42220 0.91313 1.42206 1.05734 0.99744 1.89635 1.20974 0.93351 0.85065 0.98830 1.21829 0.94551 0.83120 0.97693 0.90686 1.22660 1.02160 0.95183 0.95770 1.22805 0.96862 0.96731 1.00922 1.22349 0.98496 0.95797 0.85821 1.48508 1.52421 1.19428 1.14415 1.19931 0.78541 0.88420 0.81777 1.90794 1.57685 1.55662 1.35134 1.20596 1.01303 0.96244 0.95636 1.19318 0.94374 1.01383 0.93724 1.21039 0.92621 0.96575 0.98854 1.21138 1.00731 0.99712 0.91890 1.20976 0.90990 0.98273 1.00068 1.20937 0.93721 1.07380 0.88078 1.98385 1.75689 1.88966 1.39351 1.17176 0.77973 1.01350 0.92948 1.91533 1.29997 1.92046 1.96652 0.93587 0.78370 0.94750 0.96300 0.89901 0.89793 0.89970 0.90786 0.91194 0.90902 0.87215 0.87629 0.84309 0.84207 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 6 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.23 -6.82 9.99 -15.05 -0.15 -6.97 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -19.33 5.41 -59.91 -0.32 -19.66 16 10 C 0.15 3.23 5.66 -4.05 -0.02 3.21 16 11 C 0.13 2.30 2.95 -66.96 -0.20 2.10 16 12 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 13 C -0.12 -1.73 6.23 -24.90 -0.16 -1.89 16 14 C -0.14 -1.37 7.08 -24.58 -0.17 -1.54 16 15 C 0.10 0.97 6.74 -2.53 -0.02 0.95 16 16 N -0.61 -8.80 3.07 -163.03 -0.50 -9.30 16 17 C 0.53 8.03 7.66 -10.99 -0.08 7.95 16 18 O -0.52 -10.46 14.82 5.55 0.08 -10.38 16 19 C -0.10 -1.01 4.54 -29.04 -0.13 -1.14 16 20 C -0.09 -0.99 4.38 -104.56 -0.46 -1.44 16 21 C -0.07 -0.68 9.68 -39.59 -0.38 -1.07 16 22 C -0.12 -0.97 10.04 -39.58 -0.40 -1.36 16 23 C -0.08 -0.77 9.83 -39.56 -0.39 -1.16 16 24 C -0.07 -0.85 6.33 -39.44 -0.25 -1.10 16 25 Cl -0.05 -0.59 28.62 -51.86 -1.48 -2.08 16 26 C 0.13 1.61 7.22 -39.39 -0.28 1.32 16 27 F -0.12 -1.74 16.14 2.25 0.04 -1.70 16 28 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.38 10.49 7.61 -40.82 -0.31 10.18 16 30 H 0.03 0.86 6.55 -51.93 -0.34 0.52 16 31 H 0.02 0.42 8.01 -51.93 -0.42 0.00 16 32 H 0.08 1.29 7.77 -51.93 -0.40 0.89 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.52 7.47 -51.93 -0.39 0.13 16 38 H 0.11 0.78 8.05 -51.93 -0.42 0.36 16 39 H 0.11 0.92 7.60 -51.93 -0.39 0.53 16 40 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 41 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -35.71 369.90 -9.70 -45.42 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -5.60 Total: 4.91 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -3.19 Total: -2.69 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.10 Total: -57.11 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.48 Total: -2.08 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.71 -9.70 -45.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270136047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.476 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds