Wall clock time and date at job start Sat Apr 11 2020 05:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86794 * 120.00107 * 2 1 4 4 H 1.48502 * 109.46919 * 269.99980 * 3 2 1 5 5 H 1.48495 * 109.47348 * 29.99625 * 3 2 1 6 6 H 1.48501 * 109.47372 * 149.99989 * 3 2 1 7 7 C 1.38814 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00296 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00122 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47461 * 185.01343 * 10 9 7 12 12 H 1.09003 * 109.99463 * 306.32888 * 11 10 9 13 13 C 1.54316 * 109.77377 * 67.47955 * 11 10 9 14 14 C 1.55154 * 102.86135 * 141.88739 * 13 11 10 15 15 C 1.54908 * 101.58455 * 324.30460 * 14 13 11 16 16 N 1.47020 * 109.88871 * 185.23350 * 11 10 9 17 17 C 1.34775 * 125.64917 * 61.67138 * 16 11 10 18 18 O 1.21285 * 119.99908 * 354.79884 * 17 16 11 19 19 C 1.50692 * 120.00273 * 174.79837 * 17 16 11 20 20 C 1.50700 * 109.47160 * 180.02562 * 19 17 16 21 21 C 1.38239 * 120.00426 * 265.01962 * 20 19 17 22 22 C 1.38223 * 120.05259 * 179.97438 * 21 20 19 23 23 C 1.38265 * 120.05706 * 359.71825 * 22 21 20 24 24 C 1.38278 * 120.01396 * 0.56065 * 23 22 21 25 25 Cl 1.73592 * 120.02932 * 179.72142 * 24 23 22 26 26 C 1.38401 * 120.01206 * 85.00030 * 20 19 17 27 27 F 1.35104 * 120.02647 * 359.97438 * 26 20 19 28 28 H 0.96998 * 119.99656 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99913 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47509 * 65.01158 * 10 9 7 31 31 H 1.09006 * 109.46968 * 305.01457 * 10 9 7 32 32 H 1.09005 * 110.92122 * 23.47681 * 13 11 10 33 33 H 1.09001 * 110.74728 * 260.21604 * 13 11 10 34 34 H 1.08998 * 111.00546 * 206.22962 * 14 13 11 35 35 H 1.09006 * 111.00262 * 82.38027 * 14 13 11 36 36 H 1.08993 * 110.36977 * 278.16861 * 15 14 13 37 37 H 1.09003 * 110.36498 * 155.84426 * 15 14 13 38 38 H 1.08994 * 109.47194 * 60.00192 * 19 17 16 39 39 H 1.08999 * 109.47394 * 300.00202 * 19 17 16 40 40 H 1.08000 * 119.97376 * 359.97438 * 21 20 19 41 41 H 1.07998 * 119.97413 * 180.02562 * 22 21 20 42 42 H 1.07995 * 119.99468 * 180.28207 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0685 -4.8170 -0.1255 12 1 0.3044 -4.7410 0.6482 13 6 0.4103 -4.7925 -1.5210 14 6 0.3092 -6.2981 -1.8817 15 6 1.6102 -6.8566 -1.2531 16 7 1.7804 -6.0973 -0.0010 17 6 2.4699 -6.5107 1.0808 18 8 2.6193 -5.7654 2.0259 19 6 3.0550 -7.8989 1.1161 20 6 3.7702 -8.1094 2.4258 21 6 5.1322 -7.8896 2.5127 22 6 5.7892 -8.0819 3.7136 23 6 5.0841 -8.4887 4.8312 24 6 3.7227 -8.7149 4.7458 25 17 2.8384 -9.2326 6.1470 26 6 3.0636 -8.5224 3.5418 27 9 1.7323 -8.7366 3.4581 28 1 -0.4849 0.8401 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6156 -3.7545 0.9320 31 1 2.7503 -3.6767 -0.8412 32 1 1.0389 -4.2653 -2.2387 33 1 -0.5803 -4.3402 -1.4728 34 1 0.3045 -6.4416 -2.9622 35 1 -0.5710 -6.7510 -1.4252 36 1 2.4566 -6.6860 -1.9184 37 1 1.5024 -7.9201 -1.0401 38 1 3.7603 -8.0170 0.2935 39 1 2.2553 -8.6330 1.0172 40 1 5.6835 -7.5674 1.6417 41 1 6.8532 -7.9094 3.7802 42 1 5.5977 -8.6342 5.7701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270136047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:32 Heat of formation + Delta-G solvation = -68.425022 kcal Electronic energy + Delta-G solvation = -27012.332238 eV Core-core repulsion = 22931.985518 eV Total energy + Delta-G solvation = -4080.346720 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.07707 -41.38597 -40.10887 -38.59254 -37.60571 -36.43225 -34.16822 -33.35351 -32.50875 -31.43708 -30.43198 -28.67738 -26.74048 -24.92797 -23.91458 -23.71601 -22.91485 -21.74834 -20.22732 -19.12950 -18.75609 -18.15782 -17.90991 -17.52931 -17.09000 -16.80091 -16.44455 -16.14555 -15.62787 -15.48932 -15.18032 -15.09321 -15.00204 -14.56047 -14.43518 -14.06108 -14.03583 -13.80410 -13.55284 -13.42043 -13.03308 -12.91989 -12.77553 -12.65501 -12.49254 -12.44075 -12.22320 -12.08215 -11.95417 -11.91454 -11.79697 -11.58846 -11.07916 -10.85525 -9.88707 -9.73276 -9.66414 -9.05246 -7.98940 -5.28921 -0.05247 -0.00899 0.93307 1.43778 1.46910 1.55415 1.60726 1.91011 2.44940 2.54917 3.05032 3.33457 3.36212 3.52281 3.66531 3.78181 3.90919 3.95542 3.99808 4.13294 4.15351 4.26830 4.30896 4.35978 4.44800 4.53920 4.63302 4.74707 4.84782 4.89885 4.92417 4.95951 5.05211 5.14368 5.14946 5.15545 5.27833 5.35815 5.41209 5.47713 5.69094 6.22350 6.56786 7.16086 7.28668 8.00645 8.27454 9.24507 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012141 B = 0.002845 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.668579 B = 9838.640820 C =10951.151818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.072 4.072 3 Si 0.977 3.023 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.069 0.931 9 N -0.738 5.738 10 C 0.154 3.846 11 C 0.137 3.863 12 H 0.044 0.956 13 C -0.117 4.117 14 C -0.121 4.121 15 C 0.093 3.907 16 N -0.612 5.612 17 C 0.517 3.483 18 O -0.580 6.580 19 C -0.086 4.086 20 C -0.102 4.102 21 C -0.077 4.077 22 C -0.109 4.109 23 C -0.086 4.086 24 C -0.092 4.092 25 Cl -0.061 7.061 26 C 0.093 3.907 27 F -0.141 7.141 28 H 0.253 0.747 29 H 0.375 0.625 30 H 0.003 0.997 31 H 0.024 0.976 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.151 0.849 39 H 0.124 0.876 40 H 0.164 0.836 41 H 0.175 0.825 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.394 -26.888 -0.041 28.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.381 4.381 8 H 0.087 0.913 9 N -0.381 5.381 10 C 0.027 3.973 11 C 0.032 3.968 12 H 0.062 0.938 13 C -0.155 4.155 14 C -0.159 4.159 15 C -0.027 4.027 16 N -0.346 5.346 17 C 0.307 3.693 18 O -0.459 6.459 19 C -0.125 4.125 20 C -0.104 4.104 21 C -0.095 4.095 22 C -0.127 4.127 23 C -0.104 4.104 24 C -0.119 4.119 25 Cl -0.032 7.032 26 C 0.073 3.927 27 F -0.119 7.119 28 H 0.062 0.938 29 H 0.207 0.793 30 H 0.021 0.979 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.169 0.831 39 H 0.142 0.858 40 H 0.182 0.818 41 H 0.192 0.808 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 10.537 -26.504 0.645 28.529 hybrid contribution -0.827 1.378 0.663 1.739 sum 9.710 -25.126 1.308 26.968 Atomic orbital electron populations 1.69816 1.06568 1.26265 1.59101 1.25593 0.96505 1.01099 1.03234 0.85092 0.77507 0.79101 0.77761 1.20606 1.21867 1.19899 1.19562 0.91256 0.85351 1.41975 0.91321 1.42355 1.05483 1.00797 1.89480 1.20949 0.94036 0.85268 0.97076 1.21516 0.93010 0.83454 0.98783 0.93812 1.22558 1.00754 0.98853 0.93383 1.22825 0.97495 0.92563 1.03002 1.22735 0.98963 0.97259 0.83791 1.48645 1.51537 1.18385 1.16036 1.20924 0.77708 0.89853 0.80801 1.90763 1.60017 1.57771 1.37366 1.20648 1.02477 0.92709 0.96654 1.19579 0.95338 1.01683 0.93779 1.21462 0.92065 0.95631 1.00296 1.21598 1.02326 0.97817 0.90993 1.21354 0.90113 0.97376 1.01551 1.21208 0.94728 1.08337 0.87669 1.98372 1.76105 1.89110 1.39612 1.17581 0.77609 1.03269 0.94238 1.91476 1.31214 1.92448 1.96809 0.93791 0.79343 0.97916 0.95854 0.90935 0.90983 0.86859 0.90057 0.89245 0.87010 0.83144 0.85808 0.81803 0.80771 0.81762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.00 13.06 21.65 0.28 -60.72 16 2 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 3 Si 0.98 47.83 29.55 68.60 2.03 49.85 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 6 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.25 -14.94 9.99 84.03 0.84 -14.10 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -40.77 5.41 -343.45 -1.86 -42.63 16 10 C 0.15 7.11 5.66 86.38 0.49 7.59 16 11 C 0.14 4.94 2.95 45.34 0.13 5.08 16 12 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 13 C -0.12 -3.37 6.23 31.78 0.20 -3.17 16 14 C -0.12 -2.08 7.08 31.98 0.23 -1.85 16 15 C 0.09 1.49 6.74 86.85 0.59 2.08 16 16 N -0.61 -17.01 3.07 -788.09 -2.42 -19.43 16 17 C 0.52 15.56 7.66 87.65 0.67 16.24 16 18 O -0.58 -24.38 14.82 -3.04 -0.05 -24.42 16 19 C -0.09 -1.57 4.54 29.10 0.13 -1.44 16 20 C -0.10 -2.20 4.38 -19.83 -0.09 -2.29 16 21 C -0.08 -1.26 9.68 22.27 0.22 -1.04 16 22 C -0.11 -1.52 10.04 22.27 0.22 -1.30 16 23 C -0.09 -1.44 9.83 22.29 0.22 -1.22 16 24 C -0.09 -2.12 6.33 22.36 0.14 -1.98 16 25 Cl -0.06 -1.39 28.62 -2.72 -0.08 -1.47 16 26 C 0.09 2.39 7.22 22.39 0.16 2.55 16 27 F -0.14 -4.09 16.14 44.97 0.73 -3.36 16 28 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.37 21.57 7.61 -92.71 -0.71 20.87 16 30 H 0.00 0.15 6.55 -2.38 -0.02 0.14 16 31 H 0.02 1.05 8.01 -2.38 -0.02 1.03 16 32 H 0.07 2.23 7.77 -2.38 -0.02 2.21 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 34 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.11 1.01 7.47 -2.39 -0.02 0.99 16 38 H 0.15 1.47 8.05 -2.39 -0.02 1.45 16 39 H 0.12 1.81 7.60 -2.39 -0.02 1.80 16 40 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 41 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -83.07 369.90 3.60 -79.47 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.35 Total: 21.40 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 4.62 Total: 1.31 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -3.99 Total: -122.78 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.73 Total: -3.36 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.85 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -83.07 3.60 -79.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270136047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.045 kcal (2) G-P(sol) polarization free energy of solvation -83.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds