Wall clock time and date at job start Sat Apr 11 2020 05:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99732 * 2 1 4 4 H 1.48501 * 109.47011 * 239.99883 * 3 2 1 5 5 H 1.48502 * 109.47344 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47050 * 120.00313 * 3 2 1 7 7 C 1.38811 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00363 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.46503 * 120.00083 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47234 * 179.72170 * 10 9 7 12 12 C 1.53000 * 109.47059 * 179.97438 * 11 10 9 13 13 H 1.09002 * 110.89000 * 302.57365 * 12 11 10 14 14 C 1.55163 * 111.00183 * 178.65136 * 12 11 10 15 15 C 1.54327 * 102.93884 * 206.42728 * 14 12 11 16 16 N 1.47018 * 107.27436 * 22.19004 * 15 14 12 17 17 C 1.34778 * 125.64910 * 181.09192 * 16 15 14 18 18 O 1.21563 * 119.99536 * 174.72244 * 17 16 15 19 19 C 1.47766 * 120.00056 * 354.72951 * 17 16 15 20 20 C 1.39643 * 120.14559 * 314.92373 * 19 17 16 21 21 C 1.37892 * 119.91331 * 179.69792 * 20 19 17 22 22 C 1.38393 * 120.21232 * 0.57648 * 21 20 19 23 23 C 1.38468 * 120.29034 * 359.72401 * 22 21 20 24 24 F 1.35094 * 119.95731 * 179.97438 * 23 22 21 25 25 C 1.38385 * 120.07929 * 359.97095 * 23 22 21 26 26 Cl 1.73598 * 120.10164 * 180.02562 * 25 23 22 27 27 C 1.47428 * 108.70119 * 1.06485 * 16 15 14 28 28 H 0.97000 * 120.00362 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99947 * 359.71883 * 9 7 2 30 30 H 1.09001 * 109.46775 * 299.72197 * 10 9 7 31 31 H 1.09000 * 109.47142 * 59.71965 * 10 9 7 32 32 H 1.08992 * 109.47365 * 299.99940 * 11 10 9 33 33 H 1.09007 * 109.47027 * 60.00182 * 11 10 9 34 34 H 1.09005 * 110.71853 * 324.78641 * 14 12 11 35 35 H 1.08997 * 110.71904 * 88.06583 * 14 12 11 36 36 H 1.09007 * 109.87902 * 262.77485 * 15 14 12 37 37 H 1.09004 * 110.01103 * 141.68487 * 15 14 12 38 38 H 1.07997 * 120.03757 * 359.97438 * 20 19 17 39 39 H 1.08004 * 119.89400 * 180.30142 * 21 20 19 40 40 H 1.07997 * 119.85397 * 179.69466 * 22 21 20 41 41 H 1.09003 * 110.36381 * 217.03137 * 27 16 15 42 42 H 1.08996 * 110.46480 * 94.75737 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 1.0640 -4.8197 0.0075 12 6 1.8291 -6.1447 0.0069 13 1 2.4943 -6.2090 -0.8542 14 6 0.8532 -7.3503 0.0480 15 6 1.6992 -8.4572 0.7120 16 7 2.7695 -7.7930 1.4701 17 6 3.7345 -8.4151 2.1761 18 8 4.6270 -7.7672 2.6873 19 6 3.7074 -9.8846 2.3287 20 6 2.5134 -10.5347 2.6474 21 6 2.4923 -11.9069 2.7825 22 6 3.6535 -12.6410 2.6149 23 6 4.8435 -12.0046 2.3049 24 9 5.9731 -12.7279 2.1434 25 6 4.8771 -10.6288 2.1604 26 17 6.3687 -9.8304 1.7711 27 6 2.6129 -6.3338 1.3296 28 1 -0.4851 0.8400 0.0004 29 1 0.3556 -2.3881 0.0043 30 1 2.6810 -3.7166 -0.8920 31 1 2.6886 -3.7123 0.8880 32 1 0.4411 -4.7599 0.8999 33 1 0.4336 -4.7642 -0.8800 34 1 -0.0220 -7.1176 0.6547 35 1 0.5586 -7.6425 -0.9599 36 1 2.1320 -9.1021 -0.0529 37 1 1.0785 -9.0472 1.3863 38 1 1.6067 -9.9640 2.7835 39 1 1.5676 -12.4098 3.0242 40 1 3.6313 -13.7149 2.7269 41 1 3.5886 -5.8521 1.2645 42 1 2.0460 -5.9289 2.1678 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326371885.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:41 Heat of formation + Delta-G solvation = -65.746216 kcal Electronic energy + Delta-G solvation = -26256.534156 eV Core-core repulsion = 22176.303598 eV Total energy + Delta-G solvation = -4080.230558 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.11173 -41.59845 -39.80525 -38.70494 -37.67466 -36.85558 -34.62785 -32.99828 -32.11401 -31.59773 -30.71524 -28.57017 -26.41267 -25.13288 -24.00700 -23.85278 -22.68007 -21.32593 -20.93336 -19.18764 -19.00965 -18.01955 -17.85653 -17.48743 -17.06072 -16.88055 -16.66387 -16.22319 -15.95853 -15.42245 -15.34842 -15.23157 -15.04593 -14.48943 -14.38334 -14.14869 -13.99733 -13.80398 -13.35210 -13.21255 -13.00516 -12.97252 -12.83133 -12.79487 -12.65350 -12.25818 -12.23054 -12.18701 -12.00332 -11.70361 -11.52253 -11.41225 -11.10741 -10.93235 -10.20088 -9.88596 -9.71491 -9.01483 -7.97270 -5.25957 -0.45583 -0.17496 0.85799 1.45500 1.45849 1.48586 1.54816 1.77314 2.35022 2.54478 2.90667 3.23945 3.35841 3.52606 3.61923 3.69331 3.76755 3.81778 4.03958 4.16424 4.24327 4.31911 4.34474 4.50250 4.52888 4.60848 4.62897 4.75944 4.78296 4.85776 4.91685 4.96464 5.00199 5.10677 5.14424 5.17795 5.30091 5.38453 5.46520 5.48817 5.55291 6.26041 6.35858 6.92195 7.32052 8.08344 8.32267 9.25890 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022324 B = 0.002107 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.978000 B =13286.726147 C =14170.562398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.070 0.930 9 N -0.747 5.747 10 C 0.147 3.853 11 C -0.098 4.098 12 C -0.087 4.087 13 H 0.084 0.916 14 C -0.117 4.117 15 C 0.091 3.909 16 N -0.608 5.608 17 C 0.563 3.437 18 O -0.564 6.564 19 C -0.107 4.107 20 C -0.080 4.080 21 C -0.068 4.068 22 C -0.108 4.108 23 C 0.088 3.912 24 F -0.134 7.134 25 C -0.060 4.060 26 Cl -0.057 7.057 27 C 0.109 3.891 28 H 0.253 0.747 29 H 0.376 0.624 30 H 0.014 0.986 31 H 0.012 0.988 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.170 0.830 39 H 0.195 0.805 40 H 0.182 0.818 41 H 0.052 0.948 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.095 -34.359 3.682 34.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.383 4.383 8 H 0.088 0.912 9 N -0.390 5.390 10 C 0.021 3.979 11 C -0.136 4.136 12 C -0.107 4.107 13 H 0.102 0.898 14 C -0.155 4.155 15 C -0.030 4.030 16 N -0.341 5.341 17 C 0.352 3.648 18 O -0.443 6.443 19 C -0.111 4.111 20 C -0.098 4.098 21 C -0.086 4.086 22 C -0.127 4.127 23 C 0.067 3.933 24 F -0.112 7.112 25 C -0.088 4.088 26 Cl -0.028 7.028 27 C -0.013 4.013 28 H 0.062 0.938 29 H 0.208 0.792 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.187 0.813 39 H 0.212 0.788 40 H 0.200 0.800 41 H 0.071 0.929 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.962 -33.905 3.939 34.147 hybrid contribution 1.123 1.593 -0.059 1.950 sum 2.084 -32.312 3.880 32.611 Atomic orbital electron populations 1.69787 1.06430 1.26257 1.59248 1.25558 0.96498 1.01038 1.03542 0.85229 0.77292 0.79222 0.78135 1.20396 1.21666 1.20645 1.19577 0.91358 0.85672 1.41656 0.91247 1.42572 1.05723 1.01235 1.89435 1.20869 0.94523 0.85435 0.97095 1.21514 0.97438 0.91811 1.02886 1.22208 0.97347 0.94917 0.96186 0.89806 1.22749 0.97361 0.92100 1.03244 1.22552 0.88280 0.96271 0.95862 1.48467 1.28705 1.07866 1.49062 1.18112 0.80676 0.87427 0.78579 1.90840 1.36146 1.67653 1.49661 1.19570 0.93874 0.92156 1.05452 1.21805 0.95881 0.95993 0.96164 1.21614 0.99515 0.92273 0.95157 1.21806 0.89466 1.03391 0.98022 1.17587 0.84714 0.86528 1.04421 1.91538 1.49683 1.76898 1.93131 1.21240 0.88866 0.92118 1.06623 1.98420 1.32170 1.80067 1.92146 1.22326 1.00238 0.80122 0.98632 0.93836 0.79195 0.96783 0.96993 0.91380 0.90657 0.88915 0.87517 0.90081 0.87766 0.81301 0.78818 0.80022 0.92926 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.58 13.06 21.65 0.28 -59.30 16 2 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 3 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.25 -14.51 9.99 84.03 0.84 -13.67 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.75 -38.82 5.60 -343.45 -1.92 -40.74 16 10 C 0.15 5.94 6.11 86.38 0.53 6.47 16 11 C -0.10 -2.82 4.84 30.59 0.15 -2.67 16 12 C -0.09 -1.89 3.07 -9.40 -0.03 -1.92 16 13 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 14 C -0.12 -1.50 6.42 31.79 0.20 -1.30 16 15 C 0.09 1.10 5.93 86.73 0.51 1.62 16 16 N -0.61 -13.27 3.33 -815.26 -2.71 -15.98 16 17 C 0.56 14.86 6.99 86.76 0.61 15.46 16 18 O -0.56 -20.31 15.82 -3.91 -0.06 -20.37 16 19 C -0.11 -2.05 5.38 -20.08 -0.11 -2.16 16 20 C -0.08 -0.73 8.43 22.53 0.19 -0.54 16 21 C -0.07 -0.24 10.03 22.22 0.22 -0.02 16 22 C -0.11 -0.76 10.02 22.36 0.22 -0.54 16 23 C 0.09 1.41 7.27 22.36 0.16 1.58 16 24 F -0.13 -2.52 16.83 44.97 0.76 -1.77 16 25 C -0.06 -1.29 6.34 22.65 0.14 -1.14 16 26 Cl -0.06 -1.55 26.67 -2.72 -0.07 -1.62 16 27 C 0.11 2.83 5.59 86.85 0.49 3.31 16 28 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.38 20.29 7.67 -92.71 -0.71 19.58 16 30 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.01 0.51 7.46 -2.39 -0.02 0.49 16 32 H 0.07 1.94 8.10 -2.39 -0.02 1.92 16 33 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.09 1.06 8.04 -2.38 -0.02 1.04 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.10 0.60 5.75 -2.38 -0.01 0.59 16 38 H 0.17 0.75 6.19 -2.91 -0.02 0.73 16 39 H 0.19 -0.99 8.06 -2.91 -0.02 -1.01 16 40 H 0.18 0.11 8.06 -2.91 -0.02 0.09 16 41 H 0.05 1.68 7.91 -2.39 -0.02 1.66 16 42 H 0.07 1.88 8.00 -2.39 -0.02 1.86 16 Total: -1.00 -79.89 366.17 3.24 -76.65 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.35 Total: 13.36 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 4.60 Total: 0.61 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -4.35 Total: -116.03 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.06 Total: -20.37 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.76 Total: -1.77 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.07 Total: -1.62 kcal Total: -79.89 3.24 -76.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326371885.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.904 kcal (2) G-P(sol) polarization free energy of solvation -79.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds