Wall clock time and date at job start Sat Apr 11 2020 05:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99830 * 2 1 4 4 H 1.48496 * 109.47369 * 270.00202 * 3 2 1 5 5 H 1.48500 * 109.47096 * 30.00423 * 3 2 1 6 6 H 1.48504 * 109.46917 * 150.00080 * 3 2 1 7 7 C 1.38815 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00221 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99538 * 179.97438 * 7 2 1 10 10 C 1.46507 * 119.99560 * 173.79891 * 9 7 2 11 11 C 1.52996 * 112.85061 * 294.78840 * 10 9 7 12 12 N 1.46491 * 109.47200 * 292.02474 * 11 10 9 13 13 C 1.34780 * 120.00237 * 175.91686 * 12 11 10 14 14 O 1.21287 * 119.99788 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00413 * 180.02562 * 13 12 11 16 16 C 1.50703 * 109.47412 * 179.97438 * 15 13 12 17 17 C 1.38243 * 119.97957 * 264.97952 * 16 15 13 18 18 C 1.38181 * 120.03592 * 179.97438 * 17 16 15 19 19 C 1.38479 * 120.00539 * 359.97438 * 18 17 16 20 20 F 1.35103 * 120.02431 * 180.02562 * 19 18 17 21 21 C 1.38419 * 119.96009 * 359.78687 * 19 18 17 22 22 C 1.38337 * 119.96047 * 0.48725 * 21 19 18 23 23 Cl 1.73596 * 120.00018 * 179.73868 * 22 21 19 24 24 C 1.53780 * 113.68620 * 66.06097 * 10 9 7 25 25 C 1.53773 * 87.08459 * 89.12443 * 24 10 9 26 26 C 1.53778 * 87.08279 * 25.43107 * 25 24 10 27 27 H 0.96995 * 120.00260 * 359.97438 * 1 2 3 28 28 H 0.96994 * 120.00579 * 353.80727 * 9 7 2 29 29 H 1.09005 * 109.46926 * 172.02332 * 11 10 9 30 30 H 1.08998 * 109.47382 * 52.02845 * 11 10 9 31 31 H 0.96997 * 120.00624 * 355.91291 * 12 11 10 32 32 H 1.08998 * 109.47088 * 59.99738 * 15 13 12 33 33 H 1.09004 * 109.47206 * 299.99848 * 15 13 12 34 34 H 1.07999 * 119.98052 * 0.02562 * 17 16 15 35 35 H 1.08010 * 119.99500 * 179.97438 * 18 17 16 36 36 H 1.08008 * 120.02268 * 180.25622 * 21 19 18 37 37 H 1.09003 * 113.61269 * 203.67229 * 24 10 9 38 38 H 1.09005 * 113.61476 * 334.57243 * 24 10 9 39 39 H 1.09000 * 113.61339 * 270.88222 * 25 24 10 40 40 H 1.09004 * 113.61884 * 139.98090 * 25 24 10 41 41 H 1.09004 * 113.61785 * 220.02560 * 26 25 24 42 42 H 1.09003 * 113.61356 * 89.11726 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4635 0.1354 11 6 3.8979 -3.1309 1.4954 12 7 4.5246 -2.3195 2.5417 13 6 4.3930 -2.6705 3.8363 14 8 3.7552 -3.6580 4.1350 15 6 5.0373 -1.8356 4.9127 16 6 4.7406 -2.4388 6.2615 17 6 3.6702 -1.9768 7.0045 18 6 3.3968 -2.5294 8.2412 19 6 4.1947 -3.5469 8.7367 20 9 3.9274 -4.0878 9.9455 21 6 5.2634 -4.0129 7.9907 22 6 5.5392 -3.4547 6.7553 23 17 6.8834 -4.0338 5.8218 24 6 3.9258 -3.4181 -1.0556 25 6 5.1364 -2.7234 -1.7010 26 6 5.5906 -2.3648 -0.2763 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3670 -0.0917 29 1 4.3472 -4.1240 1.4875 30 1 2.8295 -3.2171 1.6935 31 1 5.0345 -1.5296 2.3029 32 1 4.6393 -0.8217 4.8731 33 1 6.1156 -1.8091 4.7555 34 1 3.0469 -1.1841 6.6178 35 1 2.5606 -2.1676 8.8213 36 1 5.8839 -4.8093 8.3744 37 1 4.1036 -4.4647 -0.8083 38 1 2.9930 -3.2629 -1.5978 39 1 4.8710 -1.8564 -2.3059 40 1 5.8106 -3.4088 -2.2147 41 1 6.0019 -1.3591 -0.1892 42 1 6.2236 -3.1234 0.1841 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326877439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:47 Heat of formation + Delta-G solvation = -30.781143 kcal Electronic energy + Delta-G solvation = -26898.117306 eV Core-core repulsion = 22819.402947 eV Total energy + Delta-G solvation = -4078.714359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.15827 -40.09986 -39.25130 -38.27490 -36.66813 -33.95735 -33.32875 -32.82257 -31.20099 -30.62590 -28.44992 -26.51111 -25.38680 -23.64915 -23.40463 -22.33859 -21.52572 -20.09815 -18.35485 -18.06388 -17.70126 -17.01885 -16.93562 -16.25223 -15.84902 -15.42783 -15.11467 -14.91789 -14.63780 -14.39425 -14.29350 -14.01694 -13.79387 -13.68729 -13.09253 -12.86736 -12.74450 -12.59156 -12.23296 -12.00473 -11.82765 -11.55416 -11.49397 -11.44408 -11.23570 -11.11698 -10.97516 -10.50075 -10.30552 -10.19039 -9.75691 -9.64499 -9.54055 -9.21310 -8.96413 -8.76426 -8.57161 -7.37995 -5.83927 -3.21803 0.74086 0.84151 1.82328 2.94905 3.10404 3.27359 3.30551 3.38032 3.65023 3.97707 4.36959 4.44797 4.50223 4.63428 4.87260 4.95271 5.00811 5.05606 5.14968 5.19854 5.25996 5.31500 5.39510 5.43594 5.64018 5.64631 5.67842 5.84723 5.94187 6.00344 6.06209 6.08160 6.17915 6.21246 6.46295 6.50744 6.62511 6.79328 6.83810 6.95646 7.87347 7.93194 8.34606 8.56612 9.11601 9.83071 10.01405 11.33961 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013022 B = 0.003183 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.615205 B = 8794.042147 C =10121.142454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.881 3.119 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.092 0.908 9 N -0.724 5.724 10 C 0.179 3.821 11 C 0.121 3.879 12 N -0.708 5.708 13 C 0.514 3.486 14 O -0.538 6.538 15 C -0.111 4.111 16 C -0.059 4.059 17 C -0.064 4.064 18 C -0.146 4.146 19 C 0.107 3.893 20 F -0.135 7.135 21 C -0.147 4.147 22 C 0.007 3.993 23 Cl -0.055 7.055 24 C -0.148 4.148 25 C -0.130 4.130 26 C -0.147 4.147 27 H 0.260 0.740 28 H 0.363 0.637 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.397 0.603 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.299 -4.312 12.514 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.187 4.187 3 Si 0.712 3.288 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.109 0.891 9 N -0.366 5.366 10 C 0.087 3.913 11 C -0.004 4.004 12 N -0.357 5.357 13 C 0.299 3.701 14 O -0.415 6.415 15 C -0.151 4.151 16 C -0.060 4.060 17 C -0.083 4.083 18 C -0.165 4.165 19 C 0.088 3.912 20 F -0.114 7.114 21 C -0.167 4.167 22 C -0.020 4.020 23 Cl -0.025 7.025 24 C -0.188 4.188 25 C -0.168 4.168 26 C -0.185 4.185 27 H 0.070 0.930 28 H 0.196 0.804 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.230 0.770 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.674 -5.147 12.686 20.068 hybrid contribution 0.728 1.500 -0.029 1.667 sum 15.401 -3.647 12.657 20.266 Atomic orbital electron populations 1.69692 1.05117 1.25833 1.57005 1.24667 0.95139 0.97048 1.01842 0.86615 0.79180 0.85285 0.77741 1.21172 1.21828 1.20335 1.18933 0.80179 0.94701 1.43246 0.89068 1.42393 1.03920 1.01770 1.88561 1.20746 0.90823 0.88561 0.91209 1.21832 0.98987 0.92524 0.87089 1.45726 1.54214 1.30229 1.05575 1.20145 0.80971 0.85611 0.83346 1.90712 1.41128 1.27368 1.82324 1.20757 1.03398 1.00630 0.90311 1.19243 0.95235 0.95838 0.95693 1.20906 0.95176 0.99374 0.92812 1.21212 1.00728 0.97048 0.97485 1.17426 0.96347 0.95429 0.82011 1.91518 1.93395 1.84868 1.41611 1.20876 0.98963 1.02589 0.94251 1.20404 0.92331 0.96612 0.92695 1.98378 1.43759 1.87746 1.72660 1.23276 0.99269 0.97667 0.98560 1.22654 0.97791 1.00561 0.95756 1.23198 0.96423 1.01252 0.97622 0.93001 0.80388 0.92677 0.90581 0.76980 0.87266 0.87587 0.83768 0.83967 0.83755 0.91009 0.90267 0.90176 0.92482 0.91906 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.97 55.49 0.78 -27.40 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 20.74 27.68 -169.99 -4.70 16.03 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.28 -5.95 6.61 56.52 0.37 -5.58 16 7 C -0.24 -6.29 9.53 -15.06 -0.14 -6.43 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 9 N -0.72 -15.22 4.98 -46.48 -0.23 -15.45 16 10 C 0.18 3.05 0.82 -131.00 -0.11 2.95 16 11 C 0.12 2.11 5.08 -4.05 -0.02 2.09 16 12 N -0.71 -10.83 5.44 -60.30 -0.33 -11.16 16 13 C 0.51 8.00 7.82 -10.99 -0.09 7.92 16 14 O -0.54 -10.43 16.03 5.55 0.09 -10.34 16 15 C -0.11 -1.27 5.34 -29.04 -0.16 -1.43 16 16 C -0.06 -0.70 4.38 -104.58 -0.46 -1.16 16 17 C -0.06 -0.71 9.68 -39.60 -0.38 -1.09 16 18 C -0.15 -1.51 10.03 -39.51 -0.40 -1.90 16 19 C 0.11 1.19 7.30 -39.43 -0.29 0.90 16 20 F -0.14 -1.52 17.27 2.25 0.04 -1.48 16 21 C -0.15 -1.62 9.81 -39.48 -0.39 -2.01 16 22 C 0.01 0.08 6.31 -39.51 -0.25 -0.17 16 23 Cl -0.05 -0.61 27.40 -51.86 -1.42 -2.03 16 24 C -0.15 -2.39 7.28 -25.92 -0.19 -2.58 16 25 C -0.13 -1.84 7.99 -25.92 -0.21 -2.05 16 26 C -0.15 -2.00 6.98 -25.92 -0.18 -2.18 16 27 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 28 H 0.36 7.47 5.80 -40.82 -0.24 7.24 16 29 H 0.06 0.90 8.01 -51.93 -0.42 0.49 16 30 H 0.08 1.62 7.80 -51.93 -0.41 1.21 16 31 H 0.40 5.31 8.23 -40.82 -0.34 4.98 16 32 H 0.11 1.05 8.05 -51.93 -0.42 0.63 16 33 H 0.11 1.01 7.12 -51.93 -0.37 0.64 16 34 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 37 H 0.07 1.03 8.01 -51.93 -0.42 0.62 16 38 H 0.08 1.49 7.87 -51.93 -0.41 1.08 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 42 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -31.86 371.36 -9.08 -40.94 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -5.55 Total: 12.28 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -3.35 Total: -6.98 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.22 Total: -54.01 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.70 Total: 16.03 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.42 Total: -2.03 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.86 -9.08 -40.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326877439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.160 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds