Wall clock time and date at job start Sat Apr 11 2020 05:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31288 * 1 3 3 Si 1.86801 * 119.99767 * 2 1 4 4 H 1.48500 * 109.46708 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46914 * 299.99649 * 3 2 1 6 6 H 1.48505 * 109.47073 * 59.99586 * 3 2 1 7 7 C 1.39010 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99358 * 180.02562 * 7 2 1 9 9 N 1.37293 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.36440 * 126.05489 * 180.02562 * 9 7 2 11 11 C 1.35777 * 107.49942 * 180.02562 * 10 9 7 12 12 N 1.40302 * 126.10279 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00551 * 180.02562 * 12 11 10 14 14 O 1.21421 * 119.99666 * 359.97438 * 13 12 11 15 15 C 1.49186 * 120.00253 * 180.02562 * 13 12 11 16 16 O 1.21407 * 119.99853 * 359.97438 * 15 13 12 17 17 N 1.34779 * 119.99669 * 180.02562 * 15 13 12 18 18 C 1.40019 * 119.99636 * 185.26924 * 17 15 13 19 19 C 1.40983 * 119.93185 * 33.12575 * 18 17 15 20 20 C 1.35907 * 119.65717 * 180.02562 * 19 18 17 21 21 C 1.40967 * 119.44769 * 359.97438 * 20 19 18 22 22 N 1.32636 * 132.21130 * 180.02562 * 21 20 19 23 23 C 1.33487 * 109.15324 * 180.02562 * 22 21 20 24 24 C 1.35129 * 108.61188 * 0.03736 * 23 22 21 25 25 N 1.36825 * 107.18427 * 359.95934 * 24 23 22 26 26 C 1.35619 * 119.93490 * 213.14223 * 18 17 15 27 27 C 1.40726 * 107.80137 * 0.24407 * 11 10 9 28 28 N 1.30873 * 108.37201 * 359.58356 * 27 11 10 29 29 H 0.96992 * 120.00090 * 0.02562 * 1 2 3 30 30 H 1.07998 * 126.24925 * 0.05913 * 10 9 7 31 31 H 0.97006 * 119.99397 * 0.02562 * 12 11 10 32 32 H 0.96989 * 120.00348 * 5.27025 * 17 15 13 33 33 H 1.08002 * 120.17148 * 359.97423 * 19 18 17 34 34 H 1.07997 * 120.27878 * 179.72635 * 20 19 18 35 35 H 1.08002 * 125.69093 * 180.02562 * 23 22 21 36 36 H 1.08007 * 126.40760 * 179.97438 * 24 23 22 37 37 H 1.08000 * 119.73894 * 0.02896 * 26 18 17 38 38 H 1.07997 * 125.81233 * 179.75684 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 3.7068 1.3464 0.0006 5 1 1.8881 2.3964 -1.2126 6 1 1.8879 2.3965 1.2125 7 6 2.0079 -1.2039 0.0005 8 1 3.0879 -1.2038 0.0010 9 7 1.3214 -2.3929 0.0005 10 6 1.8752 -3.6398 0.0015 11 6 0.8574 -4.5385 0.0006 12 7 0.9880 -5.9355 0.0006 13 6 -0.1113 -6.7152 -0.0010 14 8 -1.2148 -6.2087 -0.0019 15 6 0.0277 -8.2006 -0.0004 16 8 1.1311 -8.7070 0.0010 17 7 -1.0717 -8.9802 -0.0024 18 6 -0.9445 -10.3701 0.1095 19 6 0.1000 -10.9211 0.8795 20 6 0.2186 -12.2710 0.9839 21 6 -0.7068 -13.1014 0.3197 22 7 -0.8295 -14.4202 0.2482 23 6 -1.8815 -14.7213 -0.5163 24 6 -2.4460 -13.5710 -0.9456 25 7 -1.7123 -12.5411 -0.4232 26 6 -1.8260 -11.1835 -0.5233 27 6 -0.3519 -3.8190 -0.0068 28 7 -0.0714 -2.5407 -0.0010 29 1 -0.4850 0.8400 -0.0004 30 1 2.9304 -3.8700 0.0033 31 1 1.8697 -6.3401 0.0017 32 1 -1.9510 -8.5785 -0.0815 33 1 0.8028 -10.2739 1.3831 34 1 1.0176 -12.7039 1.5675 35 1 -2.2242 -15.7179 -0.7525 36 1 -3.3142 -13.4815 -1.5819 37 1 -2.6233 -10.7546 -1.1122 38 1 -1.3428 -4.2485 -0.0130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330146114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:07 Heat of formation + Delta-G solvation = 127.813607 kcal Electronic energy + Delta-G solvation = -27000.146981 eV Core-core repulsion = 22847.122275 eV Total energy + Delta-G solvation = -4153.024706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.08465 -41.02968 -39.84066 -38.52341 -37.50182 -35.13378 -34.22761 -33.89079 -33.27690 -30.44181 -29.75657 -29.04416 -28.16741 -25.75511 -24.56193 -24.01057 -22.68946 -21.95688 -21.17859 -20.60523 -19.64863 -18.91659 -18.22933 -17.58595 -17.43498 -16.60234 -16.21531 -16.10060 -15.71973 -15.58386 -15.22432 -14.97936 -14.70609 -14.27121 -14.16190 -14.02593 -13.77910 -13.39588 -13.19555 -13.09842 -12.61833 -12.14615 -11.83205 -11.71673 -11.44717 -11.37255 -11.36827 -10.99682 -10.58424 -10.48379 -10.45235 -10.39999 -9.41140 -9.33619 -8.98661 -8.72280 -8.23611 -8.11604 -6.90962 -6.69105 -4.37040 0.32931 0.84140 1.41432 1.88217 2.52766 2.57528 2.84853 2.98879 3.04892 3.08372 3.26376 3.53500 3.57686 3.76440 3.93931 4.14279 4.24096 4.30699 4.38711 4.60411 4.78249 4.88569 4.89893 5.00753 5.10908 5.51588 5.55815 5.64022 5.83572 6.08864 6.15311 6.22984 6.31864 6.55440 6.67058 6.72309 6.79023 6.85750 7.06493 7.41483 7.57319 7.70603 7.88084 8.05932 8.29420 8.57166 9.20840 9.49102 10.26578 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.051517 B = 0.001776 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.376647 B =15765.006589 C =16183.651817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.046 3.954 3 Si 0.937 3.063 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.321 4.321 8 H 0.120 0.880 9 N -0.136 5.136 10 C -0.076 4.076 11 C -0.074 4.074 12 N -0.575 5.575 13 C 0.485 3.515 14 O -0.519 6.519 15 C 0.521 3.479 16 O -0.501 6.501 17 N -0.644 5.644 18 C 0.144 3.856 19 C -0.096 4.096 20 C -0.062 4.062 21 C 0.213 3.787 22 N -0.492 5.492 23 C 0.029 3.971 24 C -0.098 4.098 25 N -0.347 5.347 26 C 0.014 3.986 27 C -0.024 4.024 28 N -0.261 5.261 29 H 0.276 0.724 30 H 0.150 0.850 31 H 0.410 0.590 32 H 0.427 0.573 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.168 0.832 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.686 -19.775 -0.711 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.453 4.453 8 H 0.137 0.863 9 N 0.098 4.902 10 C -0.227 4.227 11 C -0.180 4.180 12 N -0.218 5.218 13 C 0.265 3.735 14 O -0.396 6.396 15 C 0.304 3.696 16 O -0.374 6.374 17 N -0.292 5.292 18 C 0.047 3.953 19 C -0.121 4.121 20 C -0.083 4.083 21 C -0.031 4.031 22 N -0.212 5.212 23 C -0.123 4.123 24 C -0.230 4.230 25 N -0.019 5.019 26 C -0.111 4.111 27 C -0.200 4.200 28 N -0.091 5.091 29 H 0.087 0.913 30 H 0.168 0.832 31 H 0.246 0.754 32 H 0.266 0.734 33 H 0.174 0.826 34 H 0.176 0.824 35 H 0.198 0.802 36 H 0.200 0.800 37 H 0.186 0.814 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.865 -18.910 -0.352 19.129 hybrid contribution 0.102 0.360 -0.578 0.688 sum -2.762 -18.550 -0.930 18.778 Atomic orbital electron populations 1.70209 1.06208 1.28195 1.34572 1.25688 0.95751 1.00444 0.95284 0.85725 0.79687 0.79966 0.78586 1.18560 1.19805 1.19802 1.20010 0.91853 0.80409 1.53053 0.86264 1.44596 1.04114 1.03424 1.38097 1.21303 0.97011 0.85152 1.19269 1.17221 0.94718 0.80297 1.25751 1.42100 1.08459 1.04748 1.66462 1.19232 0.85594 0.86003 0.82681 1.90693 1.25270 1.73836 1.49838 1.20558 0.84056 0.88765 0.76235 1.90777 1.25321 1.75492 1.45838 1.42994 1.11408 1.03194 1.71612 1.16860 0.97249 0.83186 0.98010 1.21159 0.97972 0.94960 0.97968 1.20177 0.97781 0.91167 0.99149 1.21046 0.92920 0.89767 0.99339 1.70781 1.20008 1.08885 1.21536 1.22513 0.93688 0.98455 0.97675 1.22685 1.03811 0.85822 1.10648 1.42482 1.21636 1.05080 1.32684 1.20924 1.04860 0.80830 1.04518 1.24153 0.97898 0.90784 1.07116 1.78284 0.90094 1.14937 1.25796 0.91297 0.83242 0.75434 0.73354 0.82569 0.82446 0.80189 0.80017 0.81447 0.80522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.49 11.81 55.50 0.66 -19.83 16 2 C 0.05 1.14 5.50 -17.50 -0.10 1.05 16 3 Si 0.94 18.11 29.55 -169.99 -5.02 13.08 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 7 C -0.32 -8.10 10.25 -14.82 -0.15 -8.25 16 8 H 0.12 2.68 7.83 -52.49 -0.41 2.27 16 9 N -0.14 -3.55 3.73 -11.40 -0.04 -3.59 16 10 C -0.08 -1.68 11.49 -16.38 -0.19 -1.87 16 11 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 12 N -0.58 -9.77 5.45 -10.49 -0.06 -9.83 16 13 C 0.48 7.70 7.85 -11.71 -0.09 7.61 16 14 O -0.52 -9.36 13.63 5.44 0.07 -9.29 16 15 C 0.52 6.68 7.63 -11.71 -0.09 6.59 16 16 O -0.50 -6.94 14.14 5.45 0.08 -6.86 16 17 N -0.64 -6.46 5.32 -10.53 -0.06 -6.52 16 18 C 0.14 1.41 6.23 -84.01 -0.52 0.89 16 19 C -0.10 -0.97 8.65 -39.38 -0.34 -1.32 16 20 C -0.06 -0.62 10.10 -39.38 -0.40 -1.02 16 21 C 0.21 2.46 7.80 -156.03 -1.22 1.24 16 22 N -0.49 -6.02 11.32 -12.77 -0.14 -6.17 16 23 C 0.03 0.27 11.83 -17.94 -0.21 0.06 16 24 C -0.10 -0.81 11.76 -16.43 -0.19 -1.00 16 25 N -0.35 -3.45 2.95 -62.44 -0.18 -3.64 16 26 C 0.01 0.12 10.84 -16.37 -0.18 -0.05 16 27 C -0.02 -0.58 10.85 -17.02 -0.18 -0.77 16 28 N -0.26 -7.18 10.39 30.81 0.32 -6.86 16 29 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.15 2.76 8.06 -52.49 -0.42 2.34 16 31 H 0.41 5.86 8.29 -40.82 -0.34 5.52 16 32 H 0.43 3.58 8.28 -40.82 -0.34 3.24 16 33 H 0.16 1.61 6.45 -52.49 -0.34 1.27 16 34 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.18 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.18 4.17 5.92 -52.49 -0.31 3.86 16 LS Contribution 342.65 15.07 5.16 5.16 Total: -1.00 -33.55 342.65 -6.65 -40.20 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -2.99 Total: 13.16 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: -4.44 Total: 0.98 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.49 Total: -56.43 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: 0.15 Total: -16.15 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.02 Total: 13.08 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.55 -6.65 -40.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330146114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.015 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds