Wall clock time and date at job start Sat Apr 11 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31288 * 1 3 3 Si 1.86801 * 119.99767 * 2 1 4 4 H 1.48500 * 109.46708 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46914 * 299.99649 * 3 2 1 6 6 H 1.48505 * 109.47073 * 59.99586 * 3 2 1 7 7 C 1.39010 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99358 * 180.02562 * 7 2 1 9 9 N 1.37293 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.36440 * 126.05489 * 180.02562 * 9 7 2 11 11 C 1.35777 * 107.49942 * 180.02562 * 10 9 7 12 12 N 1.40302 * 126.10279 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00551 * 180.02562 * 12 11 10 14 14 O 1.21421 * 119.99666 * 359.97438 * 13 12 11 15 15 C 1.49186 * 120.00253 * 180.02562 * 13 12 11 16 16 O 1.21407 * 119.99853 * 359.97438 * 15 13 12 17 17 N 1.34779 * 119.99669 * 180.02562 * 15 13 12 18 18 C 1.40019 * 119.99636 * 185.26924 * 17 15 13 19 19 C 1.40983 * 119.93185 * 33.12575 * 18 17 15 20 20 C 1.35907 * 119.65717 * 180.02562 * 19 18 17 21 21 C 1.40967 * 119.44769 * 359.97438 * 20 19 18 22 22 N 1.32636 * 132.21130 * 180.02562 * 21 20 19 23 23 C 1.33487 * 109.15324 * 180.02562 * 22 21 20 24 24 C 1.35129 * 108.61188 * 0.03736 * 23 22 21 25 25 N 1.36825 * 107.18427 * 359.95934 * 24 23 22 26 26 C 1.35619 * 119.93490 * 213.14223 * 18 17 15 27 27 C 1.40726 * 107.80137 * 0.24407 * 11 10 9 28 28 N 1.30873 * 108.37201 * 359.58356 * 27 11 10 29 29 H 0.96992 * 120.00090 * 0.02562 * 1 2 3 30 30 H 1.07998 * 126.24925 * 0.05913 * 10 9 7 31 31 H 0.97006 * 119.99397 * 0.02562 * 12 11 10 32 32 H 0.96989 * 120.00348 * 5.27025 * 17 15 13 33 33 H 1.08002 * 120.17148 * 359.97423 * 19 18 17 34 34 H 1.07997 * 120.27878 * 179.72635 * 20 19 18 35 35 H 1.08002 * 125.69093 * 180.02562 * 23 22 21 36 36 H 1.08007 * 126.40760 * 179.97438 * 24 23 22 37 37 H 1.08000 * 119.73894 * 0.02896 * 26 18 17 38 38 H 1.07997 * 125.81233 * 179.75684 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 3.7068 1.3464 0.0006 5 1 1.8881 2.3964 -1.2126 6 1 1.8879 2.3965 1.2125 7 6 2.0079 -1.2039 0.0005 8 1 3.0879 -1.2038 0.0010 9 7 1.3214 -2.3929 0.0005 10 6 1.8752 -3.6398 0.0015 11 6 0.8574 -4.5385 0.0006 12 7 0.9880 -5.9355 0.0006 13 6 -0.1113 -6.7152 -0.0010 14 8 -1.2148 -6.2087 -0.0019 15 6 0.0277 -8.2006 -0.0004 16 8 1.1311 -8.7070 0.0010 17 7 -1.0717 -8.9802 -0.0024 18 6 -0.9445 -10.3701 0.1095 19 6 0.1000 -10.9211 0.8795 20 6 0.2186 -12.2710 0.9839 21 6 -0.7068 -13.1014 0.3197 22 7 -0.8295 -14.4202 0.2482 23 6 -1.8815 -14.7213 -0.5163 24 6 -2.4460 -13.5710 -0.9456 25 7 -1.7123 -12.5411 -0.4232 26 6 -1.8260 -11.1835 -0.5233 27 6 -0.3519 -3.8190 -0.0068 28 7 -0.0714 -2.5407 -0.0010 29 1 -0.4850 0.8400 -0.0004 30 1 2.9304 -3.8700 0.0033 31 1 1.8697 -6.3401 0.0017 32 1 -1.9510 -8.5785 -0.0815 33 1 0.8028 -10.2739 1.3831 34 1 1.0176 -12.7039 1.5675 35 1 -2.2242 -15.7179 -0.7525 36 1 -3.3142 -13.4815 -1.5819 37 1 -2.6233 -10.7546 -1.1122 38 1 -1.3428 -4.2485 -0.0130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330146114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:06 Heat of formation + Delta-G solvation = 104.561204 kcal Electronic energy + Delta-G solvation = -27001.155281 eV Core-core repulsion = 22847.122275 eV Total energy + Delta-G solvation = -4154.033006 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.80674 -42.22592 -41.42598 -39.85097 -38.42957 -36.35084 -35.51900 -34.92075 -34.63201 -32.30021 -30.60938 -29.84554 -29.74279 -27.29072 -25.92534 -24.77767 -23.66330 -22.90841 -22.65439 -21.77966 -21.28087 -20.12209 -19.28306 -18.99703 -18.33246 -17.46283 -17.45998 -17.29052 -17.01520 -16.78127 -16.67373 -15.84741 -15.67449 -15.53415 -15.40711 -15.11398 -14.87000 -14.84912 -14.68206 -14.10171 -13.52414 -13.42680 -13.38275 -12.98320 -12.94563 -12.85420 -12.51224 -12.16894 -12.02865 -12.00938 -11.30832 -11.15824 -11.09070 -10.87232 -10.70190 -10.14472 -9.47786 -8.83088 -8.63288 -8.49247 -6.26790 -0.42873 -0.00902 0.38853 0.92980 1.27811 1.41680 1.59929 1.66709 1.70754 1.86460 2.01791 2.11184 2.44907 2.47992 2.53103 2.84405 3.07693 3.24809 3.39448 3.49388 3.65293 3.94681 4.06993 4.39737 4.45986 4.49572 4.52242 4.78174 4.82231 4.92190 4.95185 4.98608 5.05529 5.19299 5.29386 5.40858 5.66207 5.76817 5.92679 6.01198 6.21016 6.39036 6.58221 6.69470 6.85603 7.00181 7.40977 7.63166 8.50029 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.051517 B = 0.001776 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.376647 B =15765.006589 C =16183.651817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C -0.004 4.004 3 Si 1.018 2.982 4 H -0.242 1.242 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.353 4.353 8 H 0.142 0.858 9 N -0.164 5.164 10 C -0.072 4.072 11 C -0.058 4.058 12 N -0.577 5.577 13 C 0.492 3.508 14 O -0.537 6.537 15 C 0.534 3.466 16 O -0.510 6.510 17 N -0.625 5.625 18 C 0.124 3.876 19 C -0.102 4.102 20 C -0.069 4.069 21 C 0.186 3.814 22 N -0.527 5.527 23 C 0.012 3.988 24 C -0.087 4.087 25 N -0.355 5.355 26 C 0.033 3.967 27 C -0.045 4.045 28 N -0.309 5.309 29 H 0.278 0.722 30 H 0.188 0.812 31 H 0.425 0.575 32 H 0.436 0.564 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.207 0.793 36 H 0.221 0.779 37 H 0.203 0.797 38 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 -21.208 -1.426 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.216 4.216 3 Si 0.837 3.163 4 H -0.164 1.164 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.159 0.841 9 N 0.068 4.932 10 C -0.223 4.223 11 C -0.164 4.164 12 N -0.222 5.222 13 C 0.273 3.727 14 O -0.415 6.415 15 C 0.316 3.684 16 O -0.384 6.384 17 N -0.274 5.274 18 C 0.027 3.973 19 C -0.126 4.126 20 C -0.089 4.089 21 C -0.057 4.057 22 N -0.248 5.248 23 C -0.139 4.139 24 C -0.218 4.218 25 N -0.027 5.027 26 C -0.092 4.092 27 C -0.221 4.221 28 N -0.140 5.140 29 H 0.087 0.913 30 H 0.205 0.795 31 H 0.263 0.737 32 H 0.277 0.723 33 H 0.170 0.830 34 H 0.186 0.814 35 H 0.224 0.776 36 H 0.238 0.762 37 H 0.220 0.780 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -2.483 -20.415 -1.068 20.593 hybrid contribution -0.132 0.450 -0.380 0.603 sum -2.615 -19.965 -1.448 20.187 Atomic orbital electron populations 1.70370 1.08336 1.29191 1.36932 1.26849 0.96481 1.04238 0.94069 0.84549 0.79077 0.74489 0.78208 1.16438 1.19779 1.19794 1.20685 0.93042 0.80807 1.53828 0.84085 1.44842 1.03752 1.04771 1.39816 1.22021 0.98916 0.84153 1.17207 1.17236 0.93407 0.82386 1.23367 1.42015 1.09786 1.02950 1.67408 1.19798 0.84814 0.87449 0.80601 1.90687 1.26140 1.74810 1.49875 1.19760 0.84655 0.87118 0.76886 1.90794 1.25792 1.75061 1.46721 1.42738 1.10952 1.03299 1.70400 1.16876 0.98220 0.82742 0.99428 1.21152 0.98226 0.94965 0.98284 1.20306 0.98113 0.91112 0.99403 1.21284 0.93983 0.90012 1.00422 1.70740 1.21603 1.09564 1.22861 1.23120 0.93139 1.00292 0.97317 1.23378 1.03899 0.84890 1.09609 1.42714 1.21586 1.05772 1.32648 1.21349 1.04546 0.80238 1.03095 1.24294 0.99001 0.90721 1.08067 1.78171 0.91851 1.16618 1.27387 0.91255 0.79466 0.73672 0.72276 0.83001 0.81418 0.77580 0.76224 0.78012 0.80469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.58 11.81 21.67 0.26 -45.33 16 2 C 0.00 -0.21 5.50 84.96 0.47 0.26 16 3 Si 1.02 37.18 29.55 68.60 2.03 39.21 16 4 H -0.24 -7.92 7.11 99.48 0.71 -7.21 16 5 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 6 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.35 -17.93 10.25 84.02 0.86 -17.07 16 8 H 0.14 6.22 7.83 -2.91 -0.02 6.20 16 9 N -0.16 -8.69 3.73 -189.99 -0.71 -9.40 16 10 C -0.07 -3.15 11.49 83.41 0.96 -2.20 16 11 C -0.06 -2.47 6.90 37.82 0.26 -2.21 16 12 N -0.58 -18.85 5.45 -305.43 -1.66 -20.52 16 13 C 0.49 15.05 7.85 87.19 0.68 15.73 16 14 O -0.54 -19.03 13.63 -3.47 -0.05 -19.07 16 15 C 0.53 12.77 7.63 87.19 0.67 13.43 16 16 O -0.51 -13.25 14.14 -3.43 -0.05 -13.29 16 17 N -0.63 -11.23 5.32 -305.57 -1.63 -12.85 16 18 C 0.12 2.17 6.23 37.90 0.24 2.41 16 19 C -0.10 -1.96 8.65 22.40 0.19 -1.77 16 20 C -0.07 -1.34 10.10 22.40 0.23 -1.11 16 21 C 0.19 4.10 7.80 134.12 1.05 5.15 16 22 N -0.53 -12.40 11.32 -194.33 -2.20 -14.60 16 23 C 0.01 0.20 11.83 83.72 0.99 1.19 16 24 C -0.09 -1.15 11.76 83.20 0.98 -0.17 16 25 N -0.36 -6.18 2.95 -351.47 -1.04 -7.21 16 26 C 0.03 0.46 10.84 83.34 0.90 1.37 16 27 C -0.05 -2.26 10.85 85.44 0.93 -1.34 16 28 N -0.31 -17.62 10.39 -56.44 -0.59 -18.20 16 29 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.19 6.49 8.06 -2.91 -0.02 6.47 16 31 H 0.43 11.34 8.29 -92.70 -0.77 10.57 16 32 H 0.44 6.28 8.28 -92.72 -0.77 5.51 16 33 H 0.15 3.01 6.45 -2.91 -0.02 2.99 16 34 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 36 H 0.22 1.00 8.06 -2.91 -0.02 0.98 16 37 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.18 8.62 5.92 -2.91 -0.02 8.61 16 Total: -1.00 -75.96 342.65 3.40 -72.56 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.36 Total: 35.04 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 9.40 Total: 13.67 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -7.56 Total: -128.11 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.10 Total: -32.37 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Total: -75.96 3.40 -72.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330146114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.120 kcal (2) G-P(sol) polarization free energy of solvation -75.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds