Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99887 * 2 1 4 4 H 1.48502 * 109.47009 * 240.00099 * 3 2 1 5 5 H 1.48495 * 109.47568 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47073 * 120.00496 * 3 2 1 7 7 C 1.38810 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00042 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99786 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99677 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46804 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.01593 * 306.38619 * 11 10 9 13 13 C 1.53873 * 110.03424 * 67.83192 * 11 10 9 14 14 C 1.54469 * 106.68768 * 119.44097 * 13 11 10 15 15 C 1.54893 * 104.09778 * 23.34108 * 14 13 11 16 16 H 1.08998 * 110.75460 * 80.70722 * 15 14 13 17 17 N 1.46502 * 110.75648 * 203.89262 * 15 14 13 18 18 C 1.34768 * 120.00221 * 271.06509 * 17 15 14 19 19 O 1.21569 * 120.00062 * 0.02562 * 18 17 15 20 20 C 1.47721 * 120.00268 * 179.97438 * 18 17 15 21 21 C 1.39662 * 120.11617 * 179.97438 * 20 18 17 22 22 C 1.37839 * 119.90289 * 179.74575 * 21 20 18 23 23 C 1.38642 * 120.13277 * 0.24035 * 22 21 20 24 24 F 1.35102 * 119.88245 * 180.02562 * 23 22 21 25 25 C 1.38737 * 120.23183 * 0.02562 * 23 22 21 26 26 Cl 1.73596 * 119.95319 * 180.02562 * 25 23 22 27 27 C 1.37968 * 120.09198 * 0.02562 * 25 23 22 28 28 C 1.54272 * 110.02823 * 184.99826 * 11 10 9 29 29 H 0.97006 * 119.99820 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00079 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47473 * 59.99715 * 10 9 7 32 32 H 1.09004 * 109.46920 * 299.99539 * 10 9 7 33 33 H 1.09000 * 110.03089 * 238.56844 * 13 11 10 34 34 H 1.09005 * 110.03171 * 359.95047 * 13 11 10 35 35 H 1.08999 * 110.40169 * 264.76381 * 14 13 11 36 36 H 1.08996 * 110.66362 * 142.05080 * 14 13 11 37 37 H 0.97007 * 119.99442 * 91.06771 * 17 15 14 38 38 H 1.08002 * 120.04968 * 0.03305 * 21 20 18 39 39 H 1.08001 * 119.92702 * 180.25281 * 22 21 20 40 40 H 1.07995 * 120.06512 * 180.02562 * 27 25 23 41 41 H 1.08997 * 110.48293 * 98.42875 * 28 11 10 42 42 H 1.08997 * 110.48872 * 335.78252 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 0.0001 12 1 0.3598 -4.7082 0.8249 13 6 0.3060 -4.8661 -1.3384 14 6 0.6219 -6.2355 -1.9796 15 6 1.0213 -7.1306 -0.7802 16 1 0.1362 -7.5025 -0.2641 17 7 1.8681 -8.2418 -1.2210 18 6 1.3065 -9.4012 -1.6169 19 8 0.0971 -9.5247 -1.6087 20 6 2.1603 -10.5215 -2.0619 21 6 1.5808 -11.7242 -2.4722 22 6 2.3814 -12.7649 -2.8915 23 6 3.7603 -12.6217 -2.9020 24 9 4.5402 -13.6448 -3.3145 25 6 4.3421 -11.4313 -2.4904 26 17 6.0695 -11.2596 -2.5071 27 6 3.5498 -10.3839 -2.0678 28 6 1.8178 -6.1596 0.1264 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.6847 -3.7146 0.8894 32 1 2.6846 -3.7145 -0.8906 33 1 -0.7662 -4.7776 -1.1637 34 1 0.6461 -4.0597 -1.9881 35 1 1.4517 -6.1445 -2.6805 36 1 -0.2588 -6.6384 -2.4796 37 1 2.8331 -8.1431 -1.2278 38 1 0.5067 -11.8370 -2.4653 39 1 1.9335 -13.6937 -3.2128 40 1 4.0031 -9.4574 -1.7479 41 1 1.8076 -6.5071 1.1594 42 1 2.8419 -6.0563 -0.2322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332299430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -62.252687 kcal Electronic energy + Delta-G solvation = -25780.162571 eV Core-core repulsion = 21700.083504 eV Total energy + Delta-G solvation = -4080.079067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.59388 -40.72876 -39.11166 -37.96237 -37.03858 -34.97316 -33.64651 -31.81838 -31.36123 -30.82306 -28.78895 -27.73055 -24.78198 -24.13663 -23.59516 -22.22449 -21.22182 -20.75976 -19.22495 -18.77728 -17.89864 -17.34233 -17.03790 -16.39982 -16.22454 -15.88172 -15.57650 -15.08819 -14.79449 -14.65445 -14.47865 -13.94159 -13.61288 -13.51960 -13.43666 -13.31743 -13.11285 -12.80392 -12.12604 -12.06285 -12.03788 -11.85763 -11.61477 -11.53188 -11.11772 -10.85798 -10.81507 -10.55434 -10.39782 -10.30929 -10.13096 -9.90390 -9.75723 -9.66661 -9.40339 -9.17006 -8.85883 -6.90841 -5.75631 -3.04146 -0.02551 0.35389 1.37674 2.19766 2.77934 3.12124 3.34746 3.44113 3.48440 3.49592 3.91073 4.08714 4.34180 4.48251 4.57512 4.66774 4.76631 4.79585 4.97697 5.04279 5.12932 5.37148 5.46311 5.51386 5.54014 5.56648 5.62021 5.65911 5.80565 5.87377 5.91419 6.06350 6.12115 6.26059 6.30026 6.38703 6.52824 6.66206 6.81837 6.93035 7.18241 7.69691 7.85994 8.43533 9.54495 10.13351 10.47922 11.47144 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019977 B = 0.001911 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.262296 B =14644.700953 C =15762.502816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.240 4.240 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.161 3.839 11 C -0.095 4.095 12 H 0.075 0.925 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.138 3.862 16 H 0.098 0.902 17 N -0.714 5.714 18 C 0.560 3.440 19 O -0.529 6.529 20 C -0.130 4.130 21 C -0.026 4.026 22 C -0.148 4.148 23 C 0.133 3.867 24 F -0.121 7.121 25 C -0.083 4.083 26 Cl -0.040 7.040 27 C -0.050 4.050 28 C -0.121 4.121 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.016 0.984 32 H 0.019 0.981 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.399 0.601 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.148 0.852 41 H 0.071 0.929 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.159 -28.948 -5.458 30.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.033 3.967 11 C -0.115 4.115 12 H 0.094 0.906 13 C -0.153 4.153 14 C -0.170 4.170 15 C 0.034 3.966 16 H 0.116 0.884 17 N -0.364 5.364 18 C 0.346 3.654 19 O -0.407 6.407 20 C -0.133 4.133 21 C -0.045 4.045 22 C -0.167 4.167 23 C 0.112 3.888 24 F -0.100 7.100 25 C -0.110 4.110 26 Cl -0.011 7.011 27 C -0.070 4.070 28 C -0.159 4.159 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.034 0.966 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.235 0.765 38 H 0.173 0.827 39 H 0.172 0.828 40 H 0.166 0.834 41 H 0.089 0.911 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.601 -28.903 -5.455 30.145 hybrid contribution 1.071 0.862 -0.099 1.378 sum 7.672 -28.041 -5.554 29.598 Atomic orbital electron populations 1.69652 1.05084 1.25733 1.57731 1.24742 0.95532 0.97682 1.03103 0.86269 0.78512 0.83591 0.77813 1.21311 1.21703 1.21306 1.19179 0.90963 0.84251 1.42711 0.91330 1.42361 1.05910 0.99936 1.89428 1.20736 0.93026 0.85382 0.97560 1.21870 0.97811 0.93722 0.98055 0.90633 1.22165 1.00302 0.96286 0.96561 1.22774 1.01443 0.95582 0.97232 1.22171 0.93970 0.84936 0.95548 0.88393 1.45995 1.10607 1.13457 1.66354 1.17969 0.87606 0.82165 0.77622 1.90814 1.13872 1.82221 1.53769 1.20053 0.92590 0.96071 1.04627 1.21292 1.01645 0.89972 0.91626 1.21176 0.90497 1.01642 1.03388 1.17677 0.88930 0.84051 0.98118 1.91576 1.74342 1.56830 1.87204 1.20859 0.87045 0.95349 1.07794 1.98420 1.07905 1.97667 1.97122 1.21158 0.92147 0.97854 0.95803 1.22619 0.99381 0.94673 0.99266 0.93480 0.78200 0.96579 0.96355 0.91858 0.90243 0.91536 0.91479 0.76543 0.82714 0.82848 0.83412 0.91069 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -18.27 5.39 -59.91 -0.32 -18.60 16 10 C 0.16 3.10 5.27 -4.04 -0.02 3.08 16 11 C -0.10 -1.44 2.96 -89.50 -0.27 -1.71 16 12 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 13 C -0.12 -1.72 6.19 -25.51 -0.16 -1.88 16 14 C -0.13 -1.64 6.53 -24.96 -0.16 -1.80 16 15 C 0.14 1.53 3.21 -65.93 -0.21 1.32 16 16 H 0.10 1.21 7.62 -51.93 -0.40 0.82 16 17 N -0.71 -6.51 5.14 -52.86 -0.27 -6.78 16 18 C 0.56 5.80 7.77 -12.39 -0.10 5.70 16 19 O -0.53 -7.31 16.03 5.31 0.09 -7.23 16 20 C -0.13 -1.03 5.87 -104.97 -0.62 -1.65 16 21 C -0.03 -0.18 9.59 -39.20 -0.38 -0.56 16 22 C -0.15 -0.87 10.01 -39.58 -0.40 -1.26 16 23 C 0.13 0.97 7.28 -39.25 -0.29 0.68 16 24 F -0.12 -0.98 16.83 2.25 0.04 -0.94 16 25 C -0.08 -0.61 6.32 -39.50 -0.25 -0.86 16 26 Cl -0.04 -0.30 28.60 -51.86 -1.48 -1.79 16 27 C -0.05 -0.33 9.31 -39.16 -0.36 -0.70 16 28 C -0.12 -1.37 5.98 -25.07 -0.15 -1.52 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.38 10.09 7.55 -40.82 -0.31 9.79 16 31 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.38 7.61 -51.93 -0.40 0.98 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.40 2.61 6.57 -40.82 -0.27 2.35 16 38 H 0.16 0.99 7.65 -52.49 -0.40 0.59 16 39 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.15 0.70 6.40 -52.49 -0.34 0.36 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.76 7.73 -51.93 -0.40 0.36 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -32.36 370.03 -9.71 -42.07 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.43 Total: 6.31 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -3.60 Total: -8.50 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.13 Total: -52.84 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: 0.09 Total: -7.23 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.04 Total: -0.94 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.48 Total: -1.79 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.36 -9.71 -42.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332299430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.185 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds