Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99887 * 2 1 4 4 H 1.48502 * 109.47009 * 240.00099 * 3 2 1 5 5 H 1.48495 * 109.47568 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47073 * 120.00496 * 3 2 1 7 7 C 1.38810 * 119.99941 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00042 * 179.97438 * 7 2 1 9 9 N 1.36940 * 119.99786 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99677 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46804 * 179.97438 * 10 9 7 12 12 H 1.09005 * 110.01593 * 306.38619 * 11 10 9 13 13 C 1.53873 * 110.03424 * 67.83192 * 11 10 9 14 14 C 1.54469 * 106.68768 * 119.44097 * 13 11 10 15 15 C 1.54893 * 104.09778 * 23.34108 * 14 13 11 16 16 H 1.08998 * 110.75460 * 80.70722 * 15 14 13 17 17 N 1.46502 * 110.75648 * 203.89262 * 15 14 13 18 18 C 1.34768 * 120.00221 * 271.06509 * 17 15 14 19 19 O 1.21569 * 120.00062 * 0.02562 * 18 17 15 20 20 C 1.47721 * 120.00268 * 179.97438 * 18 17 15 21 21 C 1.39662 * 120.11617 * 179.97438 * 20 18 17 22 22 C 1.37839 * 119.90289 * 179.74575 * 21 20 18 23 23 C 1.38642 * 120.13277 * 0.24035 * 22 21 20 24 24 F 1.35102 * 119.88245 * 180.02562 * 23 22 21 25 25 C 1.38737 * 120.23183 * 0.02562 * 23 22 21 26 26 Cl 1.73596 * 119.95319 * 180.02562 * 25 23 22 27 27 C 1.37968 * 120.09198 * 0.02562 * 25 23 22 28 28 C 1.54272 * 110.02823 * 184.99826 * 11 10 9 29 29 H 0.97006 * 119.99820 * 359.97438 * 1 2 3 30 30 H 0.96995 * 120.00079 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47473 * 59.99715 * 10 9 7 32 32 H 1.09004 * 109.46920 * 299.99539 * 10 9 7 33 33 H 1.09000 * 110.03089 * 238.56844 * 13 11 10 34 34 H 1.09005 * 110.03171 * 359.95047 * 13 11 10 35 35 H 1.08999 * 110.40169 * 264.76381 * 14 13 11 36 36 H 1.08996 * 110.66362 * 142.05080 * 14 13 11 37 37 H 0.97007 * 119.99442 * 91.06771 * 17 15 14 38 38 H 1.08002 * 120.04968 * 0.03305 * 21 20 18 39 39 H 1.08001 * 119.92702 * 180.25281 * 22 21 20 40 40 H 1.07995 * 120.06512 * 180.02562 * 27 25 23 41 41 H 1.08997 * 110.48293 * 98.42875 * 28 11 10 42 42 H 1.08997 * 110.48872 * 335.78252 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0637 -4.8197 0.0001 12 1 0.3598 -4.7082 0.8249 13 6 0.3060 -4.8661 -1.3384 14 6 0.6219 -6.2355 -1.9796 15 6 1.0213 -7.1306 -0.7802 16 1 0.1362 -7.5025 -0.2641 17 7 1.8681 -8.2418 -1.2210 18 6 1.3065 -9.4012 -1.6169 19 8 0.0971 -9.5247 -1.6087 20 6 2.1603 -10.5215 -2.0619 21 6 1.5808 -11.7242 -2.4722 22 6 2.3814 -12.7649 -2.8915 23 6 3.7603 -12.6217 -2.9020 24 9 4.5402 -13.6448 -3.3145 25 6 4.3421 -11.4313 -2.4904 26 17 6.0695 -11.2596 -2.5071 27 6 3.5498 -10.3839 -2.0678 28 6 1.8178 -6.1596 0.1264 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 2.6847 -3.7146 0.8894 32 1 2.6846 -3.7145 -0.8906 33 1 -0.7662 -4.7776 -1.1637 34 1 0.6461 -4.0597 -1.9881 35 1 1.4517 -6.1445 -2.6805 36 1 -0.2588 -6.6384 -2.4796 37 1 2.8331 -8.1431 -1.2278 38 1 0.5067 -11.8370 -2.4653 39 1 1.9335 -13.6937 -3.2128 40 1 4.0031 -9.4574 -1.7479 41 1 1.8076 -6.5071 1.1594 42 1 2.8419 -6.0563 -0.2322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332299430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = -81.420541 kcal Electronic energy + Delta-G solvation = -25780.993752 eV Core-core repulsion = 21700.083504 eV Total energy + Delta-G solvation = -4080.910248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.16945 -41.47867 -39.91167 -38.95032 -37.61366 -36.46210 -34.97765 -33.09396 -32.14750 -31.80587 -30.08703 -28.92040 -26.28305 -24.99403 -24.21579 -23.92534 -22.00875 -21.69418 -20.48368 -19.44009 -19.06861 -18.52714 -17.97535 -17.17381 -16.96377 -16.69831 -16.58323 -16.44717 -15.94115 -15.55922 -15.23540 -15.14523 -14.96848 -14.55738 -14.42505 -14.25782 -14.07715 -14.00126 -13.36621 -13.28322 -12.91191 -12.75773 -12.66353 -12.58432 -12.45919 -12.21857 -12.16896 -12.07871 -11.82940 -11.69802 -11.50769 -11.26374 -11.15406 -10.88847 -10.29537 -10.13914 -9.86314 -8.96426 -7.93165 -5.21442 -0.60875 -0.14575 0.82933 1.47894 1.50921 1.53123 1.57044 2.00353 2.48040 2.57729 2.82049 3.38625 3.40154 3.47004 3.60913 3.70263 3.83511 3.86614 4.00519 4.21956 4.24374 4.37767 4.46623 4.52215 4.57258 4.59902 4.62660 4.69817 4.81159 4.85988 4.94467 5.01022 5.03883 5.15126 5.19161 5.26717 5.40044 5.42988 5.48436 5.53407 5.58920 6.29346 6.44955 7.10440 7.35453 8.13829 8.35839 9.30258 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019977 B = 0.001911 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.262296 B =14644.700953 C =15762.502816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.746 5.746 10 C 0.159 3.841 11 C -0.089 4.089 12 H 0.065 0.935 13 C -0.112 4.112 14 C -0.123 4.123 15 C 0.148 3.852 16 H 0.087 0.913 17 N -0.703 5.703 18 C 0.562 3.438 19 O -0.568 6.568 20 C -0.139 4.139 21 C -0.027 4.027 22 C -0.138 4.138 23 C 0.126 3.874 24 F -0.127 7.127 25 C -0.091 4.091 26 Cl -0.044 7.044 27 C -0.042 4.042 28 C -0.108 4.108 29 H 0.250 0.750 30 H 0.373 0.627 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.414 0.586 38 H 0.158 0.842 39 H 0.179 0.821 40 H 0.168 0.832 41 H 0.087 0.913 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.894 -30.317 -5.527 32.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.389 5.389 10 C 0.033 3.967 11 C -0.109 4.109 12 H 0.084 0.916 13 C -0.151 4.151 14 C -0.161 4.161 15 C 0.043 3.957 16 H 0.105 0.895 17 N -0.354 5.354 18 C 0.350 3.650 19 O -0.449 6.449 20 C -0.142 4.142 21 C -0.046 4.046 22 C -0.156 4.156 23 C 0.105 3.895 24 F -0.105 7.105 25 C -0.119 4.119 26 Cl -0.015 7.015 27 C -0.061 4.061 28 C -0.146 4.146 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.252 0.748 38 H 0.176 0.824 39 H 0.196 0.804 40 H 0.185 0.815 41 H 0.105 0.895 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.409 -30.306 -5.524 31.933 hybrid contribution 0.554 1.210 -0.098 1.334 sum 8.963 -29.097 -5.622 30.960 Atomic orbital electron populations 1.69817 1.06616 1.26063 1.59615 1.25583 0.96412 1.01166 1.03914 0.85209 0.77174 0.79166 0.78204 1.20388 1.22311 1.20342 1.19615 0.91511 0.85465 1.41023 0.90624 1.42602 1.05672 1.01270 1.89312 1.20922 0.93672 0.84541 0.97568 1.21762 0.97108 0.94318 0.97675 0.91634 1.22065 0.99735 0.96969 0.96288 1.22679 1.01589 0.94152 0.97724 1.21886 0.93970 0.85211 0.94642 0.89469 1.45821 1.11223 1.12593 1.65735 1.18270 0.87301 0.82652 0.76814 1.90801 1.15624 1.82923 1.55508 1.19883 0.92775 0.95670 1.05900 1.21408 1.02002 0.89902 0.91300 1.21367 0.89775 1.02221 1.02262 1.17891 0.89451 0.83941 0.98205 1.91564 1.74579 1.57087 1.87307 1.20944 0.86948 0.95674 1.08303 1.98420 1.08234 1.97683 1.97170 1.21262 0.91478 0.98394 0.94956 1.22517 0.99597 0.92046 1.00430 0.94083 0.79478 0.96116 0.95928 0.92663 0.92954 0.90669 0.91996 0.74756 0.82422 0.80405 0.81506 0.89477 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.71 13.06 21.65 0.28 -59.43 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 3 Si 0.97 46.10 29.55 68.60 2.03 48.12 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.24 -13.60 9.99 84.03 0.84 -12.76 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.75 -37.56 5.39 -343.45 -1.85 -39.41 16 10 C 0.16 6.02 5.27 86.38 0.46 6.48 16 11 C -0.09 -2.64 2.96 -10.07 -0.03 -2.67 16 12 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 13 C -0.11 -3.37 6.19 31.39 0.19 -3.18 16 14 C -0.12 -2.93 6.53 31.74 0.21 -2.73 16 15 C 0.15 3.03 3.21 46.28 0.15 3.18 16 16 H 0.09 2.06 7.62 -2.39 -0.02 2.04 16 17 N -0.70 -11.19 5.14 -439.41 -2.26 -13.45 16 18 C 0.56 10.73 7.77 86.75 0.67 11.40 16 19 O -0.57 -15.26 16.03 -3.93 -0.06 -15.33 16 20 C -0.14 -1.94 5.87 -20.09 -0.12 -2.06 16 21 C -0.03 -0.33 9.59 22.52 0.22 -0.11 16 22 C -0.14 -1.31 10.01 22.27 0.22 -1.09 16 23 C 0.13 1.59 7.28 22.49 0.16 1.76 16 24 F -0.13 -1.85 16.83 44.97 0.76 -1.09 16 25 C -0.09 -1.16 6.32 22.33 0.14 -1.02 16 26 Cl -0.04 -0.60 28.60 -2.72 -0.08 -0.67 16 27 C -0.04 -0.46 9.31 22.54 0.21 -0.25 16 28 C -0.11 -2.18 5.98 31.67 0.19 -1.99 16 29 H 0.25 14.98 8.31 -92.70 -0.77 14.21 16 30 H 0.37 20.14 7.55 -92.71 -0.70 19.44 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.85 7.61 -2.38 -0.02 1.83 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.41 4.10 6.57 -92.70 -0.61 3.49 16 38 H 0.16 1.81 7.65 -2.91 -0.02 1.79 16 39 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 40 H 0.17 1.07 6.40 -2.91 -0.02 1.05 16 41 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 1.56 7.73 -2.39 -0.02 1.55 16 Total: -1.00 -70.02 370.03 2.56 -67.46 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: -0.24 Total: 22.89 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 3.98 Total: -9.11 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -3.83 Total: -112.28 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.06 Total: -15.33 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.76 Total: -1.09 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.67 kcal Total: -70.02 2.56 -67.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332299430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.958 kcal (2) G-P(sol) polarization free energy of solvation -70.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds