Wall clock time and date at job start Sat Apr 11 2020 05:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48498 * 109.47118 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47134 * 30.00398 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00220 * 3 2 1 7 7 C 1.38817 * 119.99873 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 359.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 180.27450 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.66645 * 303.21261 * 11 10 9 13 13 C 1.54881 * 110.75931 * 66.45247 * 11 10 9 14 14 C 1.54269 * 104.19471 * 156.25841 * 13 11 10 15 15 C 1.53871 * 106.59815 * 336.38864 * 14 13 11 16 16 H 1.09004 * 110.02986 * 240.67182 * 15 14 13 17 17 N 1.46501 * 110.03299 * 119.28742 * 15 14 13 18 18 C 1.34773 * 119.99782 * 86.45356 * 17 15 14 19 19 O 1.21544 * 120.00490 * 0.02562 * 18 17 15 20 20 C 1.47859 * 119.99690 * 180.02562 * 18 17 15 21 21 C 1.39570 * 120.12826 * 180.02562 * 20 18 17 22 22 C 1.38170 * 119.85267 * 179.97438 * 21 20 18 23 23 F 1.35105 * 119.94293 * 180.02562 * 22 21 20 24 24 C 1.38567 * 120.11219 * 0.02562 * 22 21 20 25 25 C 1.38407 * 120.24975 * 359.97438 * 24 22 21 26 26 Cl 1.73606 * 119.92469 * 179.97438 * 25 24 22 27 27 C 1.38110 * 120.15310 * 359.74587 * 25 24 22 28 28 C 1.54269 * 106.60072 * 359.97438 * 15 14 13 29 29 H 0.97000 * 120.00553 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 31 31 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 32 32 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 33 33 H 1.09004 * 110.48897 * 274.93598 * 13 11 10 34 34 H 1.08997 * 110.49131 * 37.44822 * 13 11 10 35 35 H 1.08993 * 110.03404 * 95.67744 * 14 13 11 36 36 H 1.09002 * 110.02896 * 217.10416 * 14 13 11 37 37 H 0.97000 * 120.00089 * 266.45398 * 17 15 14 38 38 H 1.08004 * 120.07209 * 359.95097 * 21 20 18 39 39 H 1.07996 * 119.87475 * 179.97438 * 24 22 21 40 40 H 1.07994 * 120.06295 * 180.25399 * 27 25 24 41 41 H 1.08999 * 110.48849 * 264.93482 * 28 15 14 42 42 H 1.08997 * 110.48674 * 142.28336 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 0.0051 10 6 4.1120 -2.4709 0.0107 11 6 5.6163 -2.1913 0.0170 12 1 5.8963 -1.5733 -0.8361 13 6 6.0442 -1.5198 1.3455 14 6 7.5446 -1.8555 1.4729 15 6 7.7838 -3.1241 0.6355 16 1 8.1539 -3.9275 1.2724 17 7 8.7475 -2.8462 -0.4323 18 6 10.0693 -2.9534 -0.1918 19 8 10.4618 -3.2811 0.9109 20 6 11.0419 -2.6724 -1.2694 21 6 12.4113 -2.7831 -1.0234 22 6 13.3152 -2.5197 -2.0347 23 9 14.6412 -2.6268 -1.7988 24 6 12.8641 -2.1458 -3.2904 25 6 11.5071 -2.0347 -3.5392 26 17 10.9512 -1.5651 -5.1154 27 6 10.5941 -2.3011 -2.5378 28 6 6.4204 -3.5154 0.0290 29 1 -0.4851 0.8400 0.0004 30 1 3.8646 -0.3621 0.0055 31 1 3.8450 -3.0407 0.9008 32 1 3.8524 -3.0443 -0.8791 33 1 5.8979 -0.4410 1.2921 34 1 5.4852 -1.9387 2.1822 35 1 8.1455 -1.0331 1.0848 36 1 7.7978 -2.0435 2.5163 37 1 8.4343 -2.5850 -1.3124 38 1 12.7637 -3.0737 -0.0447 39 1 13.5740 -1.9405 -4.0779 40 1 9.5355 -2.2179 -2.7346 41 1 5.9241 -4.2582 0.6535 42 1 6.5484 -3.8926 -0.9856 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332310310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:21 Heat of formation + Delta-G solvation = -58.280040 kcal Electronic energy + Delta-G solvation = -26064.427481 eV Core-core repulsion = 21984.520680 eV Total energy + Delta-G solvation = -4079.906800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.53111 -40.82330 -39.25362 -38.06891 -36.99138 -35.09583 -33.65713 -31.95194 -31.34449 -30.97455 -29.13338 -28.08223 -25.09961 -24.31820 -23.36846 -21.95144 -21.33222 -20.32964 -19.90056 -18.94505 -17.60964 -17.37203 -16.97265 -16.63163 -16.30055 -16.28988 -15.47573 -15.30473 -14.90820 -14.65864 -14.48019 -14.14923 -14.04203 -13.72679 -13.46271 -13.33088 -12.85651 -12.63381 -12.40483 -12.24406 -12.09565 -11.83868 -11.70216 -11.68945 -11.28223 -11.01342 -10.89302 -10.56153 -10.45719 -10.37871 -10.35282 -10.09541 -9.74380 -9.60040 -9.42352 -9.32877 -8.90476 -7.23617 -5.77907 -3.13085 -0.02939 0.30606 1.35883 2.16709 2.67551 3.05887 3.35415 3.37825 3.43798 3.53940 3.92169 4.15494 4.34107 4.37089 4.51325 4.55570 4.57866 4.59292 4.87833 4.99801 5.20764 5.27632 5.32497 5.39288 5.41139 5.48454 5.51612 5.56559 5.68624 5.71847 5.85797 5.92964 5.94324 5.95451 6.13509 6.28330 6.38445 6.44291 6.65745 6.77904 7.11105 7.78565 7.98710 8.41344 9.20781 9.93166 10.13182 11.40648 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014178 B = 0.002348 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.364993 B =11920.753843 C =13085.707704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.165 3.835 11 C -0.103 4.103 12 H 0.074 0.926 13 C -0.116 4.116 14 C -0.133 4.133 15 C 0.141 3.859 16 H 0.093 0.907 17 N -0.712 5.712 18 C 0.560 3.440 19 O -0.528 6.528 20 C -0.089 4.089 21 C -0.092 4.092 22 C 0.110 3.890 23 F -0.127 7.127 24 C -0.125 4.125 25 C -0.015 4.015 26 Cl -0.044 7.044 27 C -0.089 4.089 28 C -0.123 4.123 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.028 0.972 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.401 0.599 38 H 0.157 0.843 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.086 0.914 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.804 -6.440 -6.782 30.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.038 3.962 11 C -0.122 4.122 12 H 0.092 0.908 13 C -0.153 4.153 14 C -0.172 4.172 15 C 0.037 3.963 16 H 0.111 0.889 17 N -0.363 5.363 18 C 0.345 3.655 19 O -0.405 6.405 20 C -0.093 4.093 21 C -0.112 4.112 22 C 0.090 3.910 23 F -0.105 7.105 24 C -0.144 4.144 25 C -0.042 4.042 26 Cl -0.015 7.015 27 C -0.108 4.108 28 C -0.161 4.161 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.237 0.763 38 H 0.175 0.825 39 H 0.170 0.830 40 H 0.164 0.836 41 H 0.105 0.895 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 28.813 -6.733 -6.099 30.211 hybrid contribution 0.576 1.502 -0.628 1.727 sum 29.389 -5.231 -6.727 30.600 Atomic orbital electron populations 1.69699 1.05108 1.25805 1.57680 1.24681 0.95239 0.97207 1.02144 0.86546 0.79222 0.85014 0.77727 1.21135 1.21763 1.20319 1.19068 0.80721 0.94696 1.42829 0.89266 1.42694 1.03977 1.02275 1.91142 1.20621 0.87773 0.89274 0.98573 1.22396 0.96385 0.95507 0.97898 0.90761 1.22387 0.93927 1.01025 0.98000 1.22605 0.97494 0.96922 1.00157 1.21753 0.88217 0.98084 0.88266 0.88941 1.46142 1.05292 1.69339 1.15571 1.17956 0.82468 0.77772 0.87261 1.90809 1.79111 1.46864 1.23686 1.19745 0.93606 1.02268 0.93651 1.21357 0.91538 0.98091 1.00210 1.17260 0.78148 1.01996 0.93595 1.91572 1.30492 1.93582 1.94864 1.21194 0.95210 1.01116 0.96916 1.20476 0.92930 1.02370 0.88383 1.98428 1.89388 1.90173 1.23535 1.21318 1.00473 0.97974 0.91053 1.22677 0.93474 0.98510 1.01450 0.93073 0.80690 0.95428 0.95596 0.91561 0.90857 0.91589 0.91155 0.76333 0.82536 0.83018 0.83590 0.89502 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 21.89 27.74 -169.99 -4.72 17.18 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.40 6.51 56.52 0.37 -6.03 16 7 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.76 -17.39 5.25 -59.90 -0.31 -17.71 16 10 C 0.16 2.96 5.70 -4.04 -0.02 2.94 16 11 C -0.10 -1.37 2.96 -88.61 -0.26 -1.63 16 12 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 13 C -0.12 -1.55 5.97 -25.08 -0.15 -1.70 16 14 C -0.13 -1.51 6.59 -25.61 -0.17 -1.68 16 15 C 0.14 1.43 3.22 -66.81 -0.22 1.21 16 16 H 0.09 1.01 7.61 -51.93 -0.39 0.61 16 17 N -0.71 -6.29 4.90 -53.66 -0.26 -6.55 16 18 C 0.56 5.74 7.76 -12.32 -0.10 5.64 16 19 O -0.53 -7.17 16.02 5.33 0.09 -7.09 16 20 C -0.09 -0.73 5.87 -104.98 -0.62 -1.35 16 21 C -0.09 -0.75 9.57 -39.11 -0.37 -1.12 16 22 C 0.11 0.81 7.29 -39.48 -0.29 0.53 16 23 F -0.13 -1.02 17.26 2.25 0.04 -0.98 16 24 C -0.12 -0.80 9.80 -39.40 -0.39 -1.18 16 25 C -0.01 -0.10 6.31 -39.57 -0.25 -0.35 16 26 Cl -0.04 -0.30 28.95 -51.86 -1.50 -1.80 16 27 C -0.09 -0.59 9.32 -39.14 -0.36 -0.96 16 28 C -0.12 -1.25 5.88 -25.05 -0.15 -1.40 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.36 8.09 5.39 -40.82 -0.22 7.87 16 31 H 0.03 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.04 8.01 -51.93 -0.42 0.62 16 35 H 0.07 0.76 7.92 -51.93 -0.41 0.35 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 2.69 6.59 -40.82 -0.27 2.42 16 38 H 0.16 1.28 7.65 -52.48 -0.40 0.88 16 39 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.15 0.72 6.40 -52.49 -0.34 0.39 16 41 H 0.09 0.87 8.05 -51.93 -0.42 0.46 16 42 H 0.07 0.64 7.98 -51.93 -0.41 0.23 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -32.77 367.71 -9.35 -42.13 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -5.41 Total: 5.81 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.60 Total: -8.02 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.20 Total: -52.76 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: 0.09 Total: -7.09 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.72 Total: 17.18 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.50 Total: -1.80 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.77 -9.35 -42.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332310310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.155 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds