Wall clock time and date at job start Sat Apr 11 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99870 * 2 1 4 4 H 1.48506 * 109.46798 * 240.00391 * 3 2 1 5 5 H 1.48501 * 109.47247 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47322 * 120.00172 * 3 2 1 7 7 C 1.38815 * 120.00260 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99849 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99489 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99772 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47291 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.67246 * 56.78182 * 11 10 9 13 13 C 1.54892 * 110.75437 * 293.54708 * 11 10 9 14 14 C 1.54271 * 104.19152 * 203.55619 * 13 11 10 15 15 C 1.53870 * 106.59818 * 23.61059 * 14 13 11 16 16 H 1.08995 * 110.03479 * 240.66097 * 15 14 13 17 17 N 1.46504 * 110.02970 * 119.28256 * 15 14 13 18 18 C 1.34773 * 120.00098 * 87.08984 * 17 15 14 19 19 O 1.21558 * 120.00103 * 0.02562 * 18 17 15 20 20 C 1.47858 * 120.00479 * 179.97438 * 18 17 15 21 21 C 1.39563 * 120.12858 * 179.97438 * 20 18 17 22 22 C 1.38175 * 119.85213 * 179.72376 * 21 20 18 23 23 F 1.35101 * 119.95196 * 180.25427 * 22 21 20 24 24 C 1.38573 * 120.10589 * 0.23888 * 22 21 20 25 25 C 1.38407 * 120.25920 * 0.03717 * 24 22 21 26 26 Cl 1.73597 * 119.93117 * 179.97438 * 25 24 22 27 27 C 1.38111 * 120.14454 * 359.97438 * 25 24 22 28 28 C 1.54265 * 106.64364 * 359.97438 * 15 14 13 29 29 H 0.97002 * 120.00271 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00763 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46486 * 59.99528 * 10 9 7 32 32 H 1.08995 * 109.46843 * 300.00407 * 10 9 7 33 33 H 1.09001 * 110.48762 * 84.88469 * 13 11 10 34 34 H 1.09000 * 110.59956 * 322.29151 * 13 11 10 35 35 H 1.08992 * 110.03257 * 264.32026 * 14 13 11 36 36 H 1.09000 * 110.06737 * 142.91924 * 14 13 11 37 37 H 0.97006 * 119.99893 * 267.09038 * 17 15 14 38 38 H 1.08002 * 120.07735 * 0.02562 * 21 20 18 39 39 H 1.08002 * 119.87367 * 180.02562 * 24 22 21 40 40 H 1.07999 * 120.05957 * 179.97438 * 27 25 24 41 41 H 1.08996 * 110.49011 * 95.08550 * 28 15 14 42 42 H 1.09000 * 110.48748 * 217.73652 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 0.0001 12 1 0.3889 -4.7494 -0.8528 13 6 0.2680 -4.8606 1.3282 14 6 -0.1955 -6.3273 1.4464 15 6 0.7813 -7.1662 0.6040 16 1 0.2424 -7.6781 -0.1932 17 7 1.4658 -8.1434 1.4543 18 6 0.9050 -9.3474 1.6831 19 8 -0.1684 -9.6227 1.1836 20 6 1.5960 -10.3339 2.5407 21 6 1.0174 -11.5812 2.7798 22 6 1.6708 -12.5009 3.5776 23 9 1.1150 -13.7109 3.8062 24 6 2.8955 -12.1844 4.1434 25 6 3.4707 -10.9466 3.9139 26 17 5.0050 -10.5587 4.6275 27 6 2.8267 -10.0192 3.1184 28 6 1.8045 -6.1809 0.0023 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6848 -3.7144 0.8895 32 1 2.6848 -3.7145 -0.8905 33 1 -0.5914 -4.1919 1.2787 34 1 0.9096 -4.5944 2.1682 35 1 -1.2084 -6.4313 1.0575 36 1 -0.1610 -6.6477 2.4876 37 1 2.3226 -7.9238 1.8526 38 1 0.0634 -11.8289 2.3384 39 1 3.4031 -12.9062 4.7660 40 1 3.2766 -9.0536 2.9406 41 1 2.6965 -6.1286 0.6265 42 1 2.0657 -6.4756 -1.0141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332310313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:28 Heat of formation + Delta-G solvation = -80.984244 kcal Electronic energy + Delta-G solvation = -25804.156665 eV Core-core repulsion = 21723.265336 eV Total energy + Delta-G solvation = -4080.891328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.11049 -41.54592 -39.95393 -38.96621 -37.52403 -36.48676 -34.93760 -33.12413 -32.30170 -31.63714 -30.11980 -28.99541 -26.36837 -25.26341 -23.99048 -23.87092 -22.12730 -21.48568 -20.67092 -19.58476 -19.04901 -18.02726 -17.51437 -17.31682 -17.22057 -16.86605 -16.60748 -16.50759 -15.87254 -15.80649 -15.55424 -15.11950 -15.01641 -14.63274 -14.57829 -14.28608 -14.18635 -13.46567 -13.34162 -13.19308 -12.86864 -12.80726 -12.71174 -12.63140 -12.43502 -12.22047 -12.18449 -12.05327 -11.77435 -11.59619 -11.49186 -11.42159 -11.19007 -10.87892 -10.36266 -10.07764 -9.96011 -8.95434 -7.92481 -5.20562 -0.60318 -0.23138 0.84465 1.48482 1.50635 1.51477 1.57553 1.93801 2.41650 2.58267 2.98975 3.31543 3.40876 3.57458 3.63043 3.66342 3.79854 3.84446 3.94339 4.03116 4.18476 4.39853 4.46356 4.52819 4.56324 4.60378 4.67228 4.68890 4.79263 4.81881 4.86236 4.94375 5.03653 5.11850 5.18222 5.24850 5.37360 5.39694 5.49889 5.56161 5.58203 6.30018 6.40955 7.06042 7.36233 8.14882 8.36686 9.31010 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.001974 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.625868 B =14180.694412 C =15361.501850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.973 3.027 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.076 0.924 9 N -0.746 5.746 10 C 0.160 3.840 11 C -0.092 4.092 12 H 0.068 0.932 13 C -0.107 4.107 14 C -0.125 4.125 15 C 0.149 3.851 16 H 0.085 0.915 17 N -0.700 5.700 18 C 0.560 3.440 19 O -0.568 6.568 20 C -0.098 4.098 21 C -0.099 4.099 22 C 0.103 3.897 23 F -0.132 7.132 24 C -0.113 4.113 25 C -0.018 4.018 26 Cl -0.040 7.040 27 C -0.077 4.077 28 C -0.107 4.107 29 H 0.250 0.750 30 H 0.373 0.627 31 H 0.026 0.974 32 H 0.020 0.980 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.415 0.585 38 H 0.148 0.852 39 H 0.171 0.829 40 H 0.167 0.833 41 H 0.093 0.907 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.003 -28.514 9.140 31.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.094 0.906 9 N -0.388 5.388 10 C 0.034 3.966 11 C -0.111 4.111 12 H 0.086 0.914 13 C -0.145 4.145 14 C -0.164 4.164 15 C 0.044 3.956 16 H 0.103 0.897 17 N -0.352 5.352 18 C 0.347 3.653 19 O -0.448 6.448 20 C -0.101 4.101 21 C -0.118 4.118 22 C 0.083 3.917 23 F -0.111 7.111 24 C -0.133 4.133 25 C -0.045 4.045 26 Cl -0.010 7.010 27 C -0.096 4.096 28 C -0.145 4.145 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.043 0.957 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.253 0.747 38 H 0.166 0.834 39 H 0.189 0.811 40 H 0.185 0.815 41 H 0.112 0.888 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.538 -28.600 8.847 31.131 hybrid contribution -0.029 1.080 0.208 1.101 sum 8.509 -27.520 9.055 30.195 Atomic orbital electron populations 1.69813 1.06628 1.26048 1.59682 1.25579 0.96396 1.01159 1.03968 0.85215 0.77171 0.79186 0.78215 1.20404 1.22378 1.20302 1.19620 0.91531 0.85446 1.40920 0.90564 1.42585 1.05681 1.01258 1.89317 1.20809 0.93660 0.84445 0.97717 1.22154 0.96958 0.94035 0.97929 0.91400 1.22237 0.99316 0.95583 0.97360 1.22502 0.99098 0.94355 1.00458 1.21574 0.93417 0.88410 0.92181 0.89698 1.46001 1.24806 1.13891 1.50499 1.18250 0.84579 0.82122 0.80314 1.90803 1.22870 1.79016 1.52094 1.19510 0.95698 0.94523 1.00389 1.21365 1.01231 0.92216 0.97025 1.17266 0.93136 0.81728 0.99535 1.91557 1.84939 1.41491 1.93104 1.21392 0.94096 0.97219 1.00551 1.20492 0.90190 0.94710 0.99081 1.98432 1.26682 1.93909 1.82010 1.21473 0.93018 1.00531 0.94621 1.22547 0.97741 0.91761 1.02469 0.94107 0.79490 0.95650 0.96189 0.93576 0.91762 0.91854 0.91141 0.74652 0.83409 0.81129 0.81522 0.88840 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.57 13.06 21.65 0.28 -59.29 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 3 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.24 -13.46 9.99 84.03 0.84 -12.62 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.75 -37.25 5.45 -343.44 -1.87 -39.12 16 10 C 0.16 5.96 5.71 86.38 0.49 6.46 16 11 C -0.09 -2.66 2.95 -9.48 -0.03 -2.69 16 12 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 13 C -0.11 -3.10 5.97 31.67 0.19 -2.92 16 14 C -0.13 -3.00 6.59 31.32 0.21 -2.79 16 15 C 0.15 3.04 3.23 45.71 0.15 3.19 16 16 H 0.08 1.96 7.58 -2.39 -0.02 1.94 16 17 N -0.70 -11.36 4.94 -441.96 -2.18 -13.55 16 18 C 0.56 11.22 7.77 86.79 0.67 11.89 16 19 O -0.57 -15.98 16.01 -3.90 -0.06 -16.05 16 20 C -0.10 -1.49 5.87 -20.09 -0.12 -1.61 16 21 C -0.10 -1.57 9.57 22.57 0.22 -1.35 16 22 C 0.10 1.41 7.29 22.33 0.16 1.57 16 23 F -0.13 -2.04 17.26 44.97 0.78 -1.27 16 24 C -0.11 -1.17 9.80 22.39 0.22 -0.95 16 25 C -0.02 -0.18 6.31 22.28 0.14 -0.04 16 26 Cl -0.04 -0.39 28.95 -2.72 -0.08 -0.47 16 27 C -0.08 -0.82 9.32 22.56 0.21 -0.61 16 28 C -0.11 -2.12 5.99 31.69 0.19 -1.93 16 29 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.37 20.00 7.53 -92.71 -0.70 19.31 16 31 H 0.03 0.93 8.10 -2.38 -0.02 0.91 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.89 8.02 -2.39 -0.02 1.88 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.07 1.61 7.92 -2.39 -0.02 1.59 16 37 H 0.41 4.21 6.38 -92.70 -0.59 3.61 16 38 H 0.15 2.56 7.65 -2.91 -0.02 2.54 16 39 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 40 H 0.17 0.97 6.40 -2.91 -0.02 0.96 16 41 H 0.09 1.52 7.64 -2.39 -0.02 1.50 16 42 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -69.19 370.54 2.68 -66.50 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.22 Total: 23.78 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 4.01 Total: -8.46 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -3.77 Total: -111.96 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -0.06 Total: -16.05 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.78 Total: -1.27 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -69.19 2.68 -66.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332310313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.481 kcal (2) G-P(sol) polarization free energy of solvation -69.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds