Wall clock time and date at job start Sat Apr 11 2020 05:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31287 * 1 3 3 Si 1.86800 * 119.99861 * 2 1 4 4 H 1.48496 * 109.47415 * 239.99896 * 3 2 1 5 5 H 1.48497 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47033 * 119.99683 * 3 2 1 7 7 C 1.39001 * 120.00113 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00194 * 180.02562 * 7 2 1 9 9 N 1.37296 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.36438 * 126.05730 * 180.28810 * 9 7 2 11 11 C 1.35792 * 107.49817 * 180.19149 * 10 9 7 12 12 N 1.40288 * 126.09880 * 179.83586 * 11 10 9 13 13 C 1.34776 * 119.99834 * 179.71703 * 12 11 10 14 14 O 1.21400 * 120.00285 * 0.02562 * 13 12 11 15 15 C 1.49319 * 119.99878 * 180.02562 * 13 12 11 16 16 O 1.21361 * 120.00038 * 359.97438 * 15 13 12 17 17 N 1.34776 * 119.99878 * 180.02562 * 15 13 12 18 18 C 1.47576 * 126.93156 * 0.02562 * 17 15 13 19 19 C 1.54242 * 107.09719 * 154.56766 * 18 17 15 20 20 C 1.53613 * 104.69494 * 2.00741 * 19 18 17 21 21 C 1.51908 * 122.15823 * 237.38448 * 20 19 18 22 22 C 1.51894 * 122.18999 * 164.23646 * 20 19 18 23 23 F 1.39898 * 117.53003 * 218.94421 * 22 20 19 24 24 F 1.39903 * 117.52882 * 4.12841 * 22 20 19 25 25 C 1.48320 * 126.93375 * 179.70861 * 17 15 13 26 26 C 1.40718 * 107.79832 * 359.58211 * 11 10 9 27 27 N 1.30878 * 108.37727 * 0.25957 * 26 11 10 28 28 H 0.96998 * 120.00076 * 0.02562 * 1 2 3 29 29 H 1.08006 * 126.25308 * 0.05540 * 10 9 7 30 30 H 0.97000 * 120.00167 * 359.72491 * 12 11 10 31 31 H 1.08996 * 109.90790 * 273.93312 * 18 17 15 32 32 H 1.08992 * 109.90788 * 35.01059 * 18 17 15 33 33 H 1.08996 * 110.39319 * 120.81148 * 19 18 17 34 34 H 1.09002 * 110.39443 * 243.20970 * 19 18 17 35 35 H 1.09002 * 117.53149 * 355.82420 * 21 20 19 36 36 H 1.09008 * 117.52736 * 140.95501 * 21 20 19 37 37 H 1.09001 * 110.68326 * 336.72745 * 25 17 15 38 38 H 1.09003 * 110.68745 * 99.90639 * 25 17 15 39 39 H 1.07998 * 125.81146 * 180.24253 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 3.1006 1.6965 -1.2124 5 1 1.2818 2.7464 -0.0006 6 1 3.1005 1.6965 1.2125 7 6 2.0079 -1.2038 0.0005 8 1 3.0879 -1.2038 0.0010 9 7 1.3215 -2.3928 0.0005 10 6 1.8752 -3.6398 0.0066 11 6 0.8574 -4.5386 -0.0001 12 7 0.9881 -5.9353 -0.0004 13 6 -0.1113 -6.7150 -0.0017 14 8 -1.2146 -6.2086 -0.0031 15 6 0.0278 -8.2017 -0.0015 16 8 1.1308 -8.7080 -0.0005 17 7 -1.0716 -8.9814 -0.0033 18 6 -2.4773 -8.5321 -0.0062 19 6 -3.3133 -9.6625 -0.6405 20 6 -2.2991 -10.7770 -0.9386 21 6 -2.0988 -11.3352 -2.3371 22 6 -2.7286 -12.2021 -1.2419 23 9 -1.9528 -13.2382 -0.7111 24 9 -4.1011 -12.4588 -1.3299 25 6 -1.1127 -10.4640 -0.0094 26 6 -0.3519 -3.8190 -0.0008 27 7 -0.0713 -2.5406 -0.0003 28 1 -0.4850 0.8400 -0.0004 29 1 2.9305 -3.8700 0.0131 30 1 1.8696 -6.3400 0.0004 31 1 -2.8114 -8.3518 1.0155 32 1 -2.5741 -7.6198 -0.5947 33 1 -4.0697 -10.0148 0.0607 34 1 -3.7805 -9.3176 -1.5630 35 1 -2.7538 -10.9651 -3.1259 36 1 -1.0798 -11.5715 -2.6441 37 1 -0.1875 -10.8731 -0.4152 38 1 -1.2975 -10.8482 0.9938 39 1 -1.3428 -4.2484 -0.0018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349581700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:31 Heat of formation + Delta-G solvation = -50.241949 kcal Electronic energy + Delta-G solvation = -28578.737015 eV Core-core repulsion = 23967.302054 eV Total energy + Delta-G solvation = -4611.434961 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.113 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.71445 -48.39614 -42.11099 -41.34671 -39.96207 -39.00328 -36.39109 -35.63517 -34.93342 -32.28908 -31.35486 -29.97602 -29.11807 -27.08489 -25.56183 -23.87315 -23.62879 -22.89390 -21.43720 -21.04857 -20.92232 -19.40892 -18.96229 -18.54738 -17.85955 -17.66191 -17.43753 -17.18594 -16.90295 -16.57118 -16.11290 -16.00481 -15.53780 -15.40689 -15.09888 -14.98088 -14.86883 -14.76524 -14.65455 -14.43032 -14.23765 -13.60024 -13.49916 -13.40149 -13.16289 -13.03579 -12.88401 -12.81340 -12.55074 -12.27287 -12.13097 -11.95516 -11.47560 -11.04986 -10.92878 -10.86257 -10.50350 -10.13433 -10.00769 -8.61618 -8.48299 -6.25894 0.24391 1.05462 1.30727 1.41547 1.57240 1.72231 1.91151 2.02039 2.05790 2.13016 2.43755 2.52843 2.78588 2.92620 3.08176 3.12200 3.41254 3.48386 3.59379 4.12142 4.16600 4.22614 4.40223 4.46192 4.52602 4.53430 4.60157 4.67951 4.80774 4.87043 4.96359 4.98565 5.00789 5.08005 5.25371 5.33884 5.91233 5.98690 6.18730 6.36261 6.64020 6.72268 7.05796 7.41574 7.63791 8.50615 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.036793 B = 0.002021 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.832399 B =13850.316801 C =14354.009717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.004 4.004 3 Si 1.019 2.981 4 H -0.254 1.254 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.353 4.353 8 H 0.141 0.859 9 N -0.163 5.163 10 C -0.076 4.076 11 C -0.055 4.055 12 N -0.583 5.583 13 C 0.490 3.510 14 O -0.532 6.532 15 C 0.541 3.459 16 O -0.542 6.542 17 N -0.589 5.589 18 C 0.095 3.905 19 C -0.089 4.089 20 C -0.152 4.152 21 C -0.139 4.139 22 C 0.210 3.790 23 F -0.167 7.167 24 F -0.163 7.163 25 C 0.141 3.859 26 C -0.045 4.045 27 N -0.308 5.308 28 H 0.278 0.722 29 H 0.187 0.813 30 H 0.422 0.578 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 -20.715 -2.841 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.217 4.217 3 Si 0.837 3.163 4 H -0.178 1.178 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.485 4.485 8 H 0.158 0.842 9 N 0.069 4.931 10 C -0.227 4.227 11 C -0.162 4.162 12 N -0.227 5.227 13 C 0.272 3.728 14 O -0.409 6.409 15 C 0.324 3.676 16 O -0.419 6.419 17 N -0.322 5.322 18 C -0.026 4.026 19 C -0.127 4.127 20 C -0.154 4.154 21 C -0.176 4.176 22 C 0.173 3.827 23 F -0.147 7.147 24 F -0.143 7.143 25 C 0.019 3.981 26 C -0.221 4.221 27 N -0.140 5.140 28 H 0.088 0.912 29 H 0.204 0.796 30 H 0.260 0.740 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.285 -19.287 -2.812 19.956 hybrid contribution 0.733 -0.572 0.240 0.961 sum -3.552 -19.859 -2.571 20.337 Atomic orbital electron populations 1.70365 1.08322 1.29317 1.36803 1.26861 0.96501 1.04248 0.94056 0.84657 0.77586 0.73784 0.80244 1.17790 1.20211 1.17820 1.20598 0.93020 0.80832 1.54005 0.84186 1.44825 1.03768 1.04701 1.39846 1.22002 0.98853 0.84232 1.17565 1.17260 0.93490 0.82359 1.23051 1.42066 1.09708 1.02995 1.67963 1.20023 0.84739 0.87817 0.80237 1.90604 1.25833 1.74893 1.49599 1.19354 0.83744 0.86642 0.77829 1.90746 1.25417 1.75291 1.50479 1.48457 1.06643 1.07447 1.69700 1.22605 0.78003 0.98990 1.03044 1.22068 0.95959 0.91177 1.03491 1.23061 0.99639 0.92946 0.99724 1.24522 1.05125 0.95549 0.92444 1.19905 0.74418 0.82763 1.05600 1.93027 1.73375 1.60789 1.87519 1.93028 1.29702 1.94984 1.96598 1.21953 0.97607 0.78333 1.00174 1.24268 0.98928 0.90680 1.08219 1.78161 0.91785 1.16551 1.27453 0.91234 0.79624 0.74005 0.89952 0.88970 0.87558 0.87871 0.83654 0.84592 0.88640 0.87856 0.80491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.10 11.81 21.66 0.26 -45.84 16 2 C 0.00 -0.23 5.50 84.96 0.47 0.24 16 3 Si 1.02 37.64 29.55 68.60 2.03 39.67 16 4 H -0.25 -8.79 7.11 99.48 0.71 -8.09 16 5 H -0.28 -10.14 7.11 99.48 0.71 -9.44 16 6 H -0.25 -8.82 7.11 99.48 0.71 -8.11 16 7 C -0.35 -18.31 10.25 84.02 0.86 -17.45 16 8 H 0.14 6.28 7.83 -2.91 -0.02 6.26 16 9 N -0.16 -8.86 3.73 -189.97 -0.71 -9.57 16 10 C -0.08 -3.45 11.50 83.41 0.96 -2.49 16 11 C -0.06 -2.48 6.90 37.83 0.26 -2.22 16 12 N -0.58 -20.91 5.45 -305.33 -1.66 -22.58 16 13 C 0.49 16.82 7.83 87.23 0.68 17.50 16 14 O -0.53 -20.11 11.02 -3.40 -0.04 -20.14 16 15 C 0.54 15.59 7.95 87.23 0.69 16.28 16 16 O -0.54 -16.93 16.69 -3.28 -0.05 -16.99 16 17 N -0.59 -13.16 3.30 -811.94 -2.68 -15.84 16 18 C 0.10 1.81 6.19 86.59 0.54 2.35 16 19 C -0.09 -1.11 6.59 31.22 0.21 -0.90 16 20 C -0.15 -1.99 2.39 -52.39 -0.13 -2.11 16 21 C -0.14 -1.40 10.29 30.31 0.31 -1.09 16 22 C 0.21 2.90 5.23 30.31 0.16 3.06 16 23 F -0.17 -2.79 17.38 44.97 0.78 -2.01 16 24 F -0.16 -2.58 17.39 44.97 0.78 -1.80 16 25 C 0.14 2.33 6.71 86.34 0.58 2.91 16 26 C -0.05 -2.35 10.84 85.44 0.93 -1.42 16 27 N -0.31 -17.91 10.39 -56.44 -0.59 -18.49 16 28 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 29 H 0.19 6.78 8.06 -2.91 -0.02 6.76 16 30 H 0.42 12.83 8.29 -92.71 -0.77 12.06 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 2.16 6.13 -2.39 -0.01 2.15 16 33 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.05 8.13 -2.39 -0.02 1.03 16 35 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.14 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.10 1.63 7.86 -2.39 -0.02 1.61 16 38 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.18 8.87 5.92 -2.91 -0.02 8.85 16 Total: -1.00 -71.20 347.44 5.00 -66.20 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.37 Total: 32.74 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 6.52 Total: 14.66 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -5.38 Total: -112.33 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.09 Total: -37.13 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 1.56 Total: -3.81 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -71.20 5.00 -66.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349581700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.956 kcal (2) G-P(sol) polarization free energy of solvation -71.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds