Wall clock time and date at job start Sat Apr 11 2020 05:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38233 * 120.00022 * 2 1 4 4 C 1.38233 * 120.00028 * 180.02562 * 3 2 1 5 5 C 1.38233 * 119.99985 * 0.02562 * 4 3 2 6 6 S 1.76202 * 120.00137 * 179.97438 * 5 4 3 7 7 O 1.42093 * 104.27706 * 333.92805 * 6 5 4 8 8 O 1.42107 * 104.27681 * 206.07179 * 6 5 4 9 9 C 1.81395 * 104.44994 * 90.00039 * 6 5 4 10 10 C 1.53005 * 109.47032 * 180.02562 * 9 6 5 11 11 C 1.53004 * 109.46957 * 180.02562 * 10 9 6 12 12 O 1.45200 * 109.47044 * 179.97438 * 11 10 9 13 13 C 1.34228 * 116.99913 * 179.97438 * 12 11 10 14 14 O 1.20828 * 120.00343 * 0.02562 * 13 12 11 15 15 C 1.50698 * 119.99941 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.47438 * 60.00178 * 15 13 12 17 17 C 1.53009 * 109.47243 * 300.00520 * 15 13 12 18 18 C 1.50702 * 109.47462 * 180.02562 * 15 13 12 19 19 H 1.08002 * 119.99446 * 359.97438 * 18 15 13 20 20 C 1.37871 * 120.00072 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99826 * 179.72119 * 20 18 15 22 22 Si 1.86800 * 120.00406 * 359.97438 * 20 18 15 23 23 H 1.48501 * 109.46758 * 269.72576 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72423 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72459 * 22 20 18 26 26 C 1.38232 * 120.00121 * 0.25402 * 5 4 3 27 27 C 1.38232 * 119.99919 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47626 * 89.99629 * 1 2 3 29 29 H 1.08999 * 109.46889 * 210.00276 * 1 2 3 30 30 H 1.09006 * 109.46585 * 329.99132 * 1 2 3 31 31 H 1.08001 * 120.00143 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.00258 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.47491 * 60.00306 * 9 6 5 34 34 H 1.08997 * 109.47304 * 300.00209 * 9 6 5 35 35 H 1.08995 * 109.47417 * 59.99822 * 10 9 6 36 36 H 1.08999 * 109.46709 * 299.99544 * 10 9 6 37 37 H 1.09003 * 109.47148 * 59.99906 * 11 10 9 38 38 H 1.09005 * 109.47093 * 299.99707 * 11 10 9 39 39 H 1.09001 * 109.46592 * 299.99600 * 17 15 13 40 40 H 1.08990 * 109.47127 * 59.99727 * 17 15 13 41 41 H 1.08994 * 109.46846 * 180.02562 * 17 15 13 42 42 H 0.96999 * 120.00128 * 180.27192 * 21 20 18 43 43 H 1.07999 * 120.00593 * 179.72572 * 26 5 4 44 44 H 1.08004 * 119.99830 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0016 6 16 6.0337 0.0000 -0.0030 7 8 6.3837 1.2371 -0.6079 8 8 6.3836 -1.2368 -0.6091 9 6 6.4877 -0.0008 1.7532 10 6 8.0120 -0.0003 1.8860 11 6 8.3949 -0.0016 3.3673 12 8 9.8414 -0.0017 3.4933 13 6 10.3447 -0.0023 4.7376 14 8 9.6013 -0.0032 5.6901 15 6 11.8371 -0.0030 4.9467 16 1 12.2687 0.8869 4.4886 17 6 12.4418 -1.2523 4.3028 18 6 12.1375 -0.0042 6.4235 19 1 11.3285 -0.0040 7.1391 20 6 13.4450 -0.0045 6.8611 21 7 13.7070 0.0000 8.1498 22 14 14.8442 -0.0041 5.6235 23 1 15.2192 -1.4041 5.3000 24 1 14.4094 0.6906 4.3851 25 1 16.0161 0.7014 6.2014 26 6 3.5805 -1.1971 -0.0074 27 6 2.1981 -1.1971 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5140 31 1 1.6582 2.1325 -0.0004 32 1 4.1206 2.1325 -0.0010 33 1 6.0812 -0.8911 2.2333 34 1 6.0812 0.8889 2.2340 35 1 8.4182 0.8900 1.4061 36 1 8.4188 -0.8899 1.4051 37 1 7.9887 -0.8923 3.8468 38 1 7.9880 0.8878 3.8486 39 1 12.0103 -2.1423 4.7610 40 1 12.2246 -1.2519 3.2347 41 1 13.5212 -1.2530 4.4544 42 1 14.6269 0.0038 8.4577 43 1 4.1205 -2.1325 -0.0128 44 1 1.6581 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350089044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:40 Heat of formation + Delta-G solvation = -138.134775 kcal Electronic energy + Delta-G solvation = -26115.815406 eV Core-core repulsion = 22125.657105 eV Total energy + Delta-G solvation = -3990.158301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.122 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.82780 -39.78297 -37.41544 -36.38041 -36.23199 -34.20670 -33.97123 -33.56606 -31.55469 -31.33814 -27.95873 -27.34544 -25.20431 -23.57555 -23.38279 -22.51145 -21.81226 -19.89441 -19.34228 -18.22488 -17.19153 -16.81268 -16.68288 -16.20977 -16.09454 -15.83060 -15.66917 -15.41330 -14.86851 -14.62051 -14.45594 -14.37880 -14.05796 -13.36243 -13.23308 -13.04582 -12.88884 -12.79825 -12.64456 -12.57447 -12.37197 -12.30241 -12.28838 -11.98269 -11.66533 -11.56619 -11.44114 -11.21578 -11.04484 -10.88994 -10.69013 -10.39431 -10.18142 -9.69625 -9.59992 -9.54874 -9.29254 -9.18882 -8.66042 -6.13971 -4.16915 -0.34820 0.33244 0.80159 2.51108 2.89878 3.10041 3.18386 3.22225 3.31124 3.34482 3.59697 3.75255 4.17428 4.21830 4.29115 4.31902 4.37668 4.40886 4.72601 4.73519 4.79699 4.97587 4.97988 5.10268 5.11124 5.15778 5.18530 5.35314 5.40671 5.44849 5.58786 5.59836 5.65605 5.66993 5.88550 5.92666 6.13765 6.30022 6.33553 6.40015 6.68484 7.02843 7.08908 7.45684 8.37333 8.67060 9.00722 9.42767 10.98239 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.027255 B = 0.001896 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.085149 B =14762.660323 C =15225.942014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.033 4.033 3 C -0.143 4.143 4 C -0.019 4.019 5 C -0.666 4.666 6 S 2.502 3.498 7 O -0.933 6.933 8 O -0.933 6.933 9 C -0.605 4.605 10 C -0.115 4.115 11 C 0.071 3.929 12 O -0.368 6.368 13 C 0.474 3.526 14 O -0.502 6.502 15 C 0.024 3.976 16 H 0.065 0.935 17 C -0.146 4.146 18 C -0.519 4.519 19 H 0.094 0.906 20 C 0.075 3.925 21 N -0.891 5.891 22 Si 0.884 3.116 23 H -0.276 1.276 24 H -0.264 1.264 25 H -0.293 1.293 26 C -0.019 4.019 27 C -0.143 4.143 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.267 0.733 43 H 0.143 0.857 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.444 -0.297 -19.211 31.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.033 4.033 3 C -0.162 4.162 4 C -0.038 4.038 5 C -0.753 4.753 6 S 2.682 3.318 7 O -0.930 6.930 8 O -0.930 6.930 9 C -0.734 4.734 10 C -0.153 4.153 11 C -0.004 4.004 12 O -0.286 6.286 13 C 0.317 3.683 14 O -0.387 6.387 15 C 0.005 3.995 16 H 0.083 0.917 17 C -0.203 4.203 18 C -0.557 4.557 19 H 0.112 0.888 20 C -0.128 4.128 21 N -0.528 5.528 22 Si 0.713 3.287 23 H -0.202 1.202 24 H -0.189 1.189 25 H -0.221 1.221 26 C -0.038 4.038 27 C -0.162 4.162 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.151 0.849 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.161 0.839 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.059 -0.295 -19.501 31.754 hybrid contribution -0.088 -0.041 0.236 0.255 sum -25.147 -0.337 -19.265 31.680 Atomic orbital electron populations 1.20956 0.90517 1.03572 1.03068 1.20316 0.96594 0.93360 0.93000 1.21209 0.94195 0.98089 1.02716 1.20996 0.94767 0.96777 0.91246 1.30580 1.26062 0.99518 1.19146 1.05323 0.74126 0.74868 0.77504 1.93582 1.82005 1.44459 1.72978 1.93584 1.82007 1.44493 1.72938 1.30275 1.05426 1.12726 1.24947 1.21255 0.90027 1.05600 0.98464 1.22713 0.79912 1.02875 0.94932 1.86559 1.23089 1.85194 1.33807 1.24553 0.93531 0.70993 0.79175 1.90549 1.61207 1.44813 1.42170 1.19161 0.83243 0.97122 0.99975 0.91741 1.22097 1.00537 0.99030 0.98685 1.20904 0.94539 1.52145 0.88064 0.88790 1.24919 0.98333 0.94306 0.95217 1.69866 1.20021 1.49641 1.13293 0.86912 0.81939 0.78168 0.81657 1.20234 1.18897 1.22067 1.20998 0.94766 0.96782 0.91235 1.21213 0.94195 0.98088 1.02718 0.90277 0.90850 0.90852 0.84949 0.83902 0.84147 0.84148 0.88851 0.88860 0.91138 0.91129 0.92363 0.93571 0.92969 0.92311 0.83897 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 10.01 36.01 0.36 -0.09 16 2 C -0.03 -0.20 5.88 -104.63 -0.62 -0.82 16 3 C -0.14 -0.94 9.70 -39.58 -0.38 -1.32 16 4 C -0.02 -0.15 9.47 -39.59 -0.37 -0.52 16 5 C -0.67 -5.48 5.66 -39.59 -0.22 -5.70 16 6 S 2.50 22.45 5.16 -107.50 -0.55 21.89 16 7 O -0.93 -11.00 17.13 -57.54 -0.99 -11.98 16 8 O -0.93 -10.99 17.12 -57.54 -0.98 -11.97 16 9 C -0.60 -4.32 5.98 37.16 0.22 -4.10 16 10 C -0.11 -1.18 5.60 -26.73 -0.15 -1.33 16 11 C 0.07 0.98 5.47 37.16 0.20 1.19 16 12 O -0.37 -6.64 10.12 -39.25 -0.40 -7.04 16 13 C 0.47 10.51 7.25 36.00 0.26 10.77 16 14 O -0.50 -12.42 15.21 -18.75 -0.29 -12.71 16 15 C 0.02 0.58 2.33 -92.92 -0.22 0.36 16 16 H 0.06 1.48 7.20 -51.93 -0.37 1.10 16 17 C -0.15 -3.06 8.60 37.16 0.32 -2.75 16 18 C -0.52 -14.76 8.95 -34.44 -0.31 -15.06 16 19 H 0.09 3.01 7.00 -52.49 -0.37 2.64 16 20 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 21 N -0.89 -27.00 13.96 55.43 0.77 -26.23 16 22 Si 0.88 21.02 24.37 -169.99 -4.14 16.88 16 23 H -0.28 -6.34 6.88 56.52 0.39 -5.95 16 24 H -0.26 -5.89 6.52 56.52 0.37 -5.52 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 C -0.02 -0.14 9.47 -39.58 -0.37 -0.52 16 27 C -0.14 -0.94 9.70 -39.58 -0.38 -1.32 16 28 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 30 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 31 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.14 0.90 7.57 -52.48 -0.40 0.50 16 33 H 0.14 0.72 8.14 -51.92 -0.42 0.29 16 34 H 0.14 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 38 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 0.82 8.11 -51.93 -0.42 0.40 16 41 H 0.05 1.12 3.28 -51.93 -0.17 0.95 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.14 0.90 7.56 -52.49 -0.40 0.51 16 44 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 LS Contribution 379.54 15.07 5.72 5.72 Total: -1.00 -37.38 379.54 -8.99 -46.37 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -6.37 Total: -1.76 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -1.76 Total: -19.18 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.77 Total: -26.23 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -2.65 Total: -43.70 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.88 kcal Atomic # 16 Polarization: 22.45 SS G_CDS: -0.55 Total: 21.89 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.38 -8.99 -46.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350089044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.762 kcal (2) G-P(sol) polarization free energy of solvation -37.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds