Wall clock time and date at job start Sat Apr 11 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39707 * 120.12507 * 329.30568 * 3 2 1 5 5 C 1.37820 * 119.87230 * 179.97438 * 4 3 2 6 6 C 1.38657 * 120.12836 * 0.02562 * 5 4 3 7 7 F 1.35096 * 119.87655 * 179.97438 * 6 5 4 8 8 C 1.38614 * 120.24939 * 0.02562 * 6 5 4 9 9 C 1.50707 * 119.93809 * 179.97438 * 8 6 5 10 10 N 1.46498 * 109.47006 * 285.00067 * 9 8 6 11 11 C 1.34776 * 119.99604 * 179.97438 * 10 9 8 12 12 O 1.21579 * 120.00651 * 0.02562 * 11 10 9 13 13 N 1.34781 * 120.00066 * 179.97438 * 11 10 9 14 14 C 1.39457 * 120.00094 * 174.94706 * 13 11 10 15 15 C 1.38652 * 119.64585 * 174.65499 * 14 13 11 16 16 C 1.40814 * 118.67337 * 180.25135 * 15 14 13 17 17 C 1.41540 * 120.99715 * 179.71855 * 16 15 14 18 18 H 1.07999 * 119.99888 * 26.12783 * 17 16 15 19 19 C 1.40033 * 119.99998 * 206.12081 * 17 16 15 20 20 N 1.30741 * 120.00507 * 9.80657 * 19 17 16 21 21 Si 1.86803 * 119.99983 * 189.80470 * 19 17 16 22 22 H 1.48500 * 109.47275 * 89.99956 * 21 19 17 23 23 H 1.48498 * 109.47306 * 210.00297 * 21 19 17 24 24 H 1.48498 * 109.46960 * 330.00216 * 21 19 17 25 25 C 1.41168 * 118.00425 * 359.51055 * 16 15 14 26 26 C 1.36594 * 119.12735 * 0.46923 * 25 16 15 27 27 N 1.32064 * 121.25591 * 359.77207 * 26 25 16 28 28 C 1.37869 * 120.12918 * 0.24905 * 8 6 5 29 29 H 1.08001 * 120.06211 * 359.97438 * 4 3 2 30 30 H 1.08005 * 119.93822 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.47235 * 164.99601 * 9 8 6 32 32 H 1.08998 * 109.46682 * 44.99702 * 9 8 6 33 33 H 0.97001 * 120.00251 * 0.02562 * 10 9 8 34 34 H 0.97005 * 119.99544 * 354.95592 * 13 11 10 35 35 H 1.07997 * 120.66003 * 359.97438 * 15 14 13 36 36 H 0.96999 * 120.00661 * 179.97438 * 20 19 17 37 37 H 1.08003 * 120.43762 * 180.24155 * 25 16 15 38 38 H 1.08000 * 119.36750 * 179.79090 * 26 25 16 39 39 H 1.07995 * 120.06823 * 179.72508 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2697 -1.0381 0.6168 5 6 4.6479 -1.0326 0.6133 6 6 5.3381 0.0016 -0.0005 7 9 6.6891 0.0022 -0.0005 8 6 4.6472 1.0354 -0.6131 9 6 5.4045 2.1562 -1.2776 10 7 5.9592 3.0451 -0.2536 11 6 6.6806 4.1240 -0.6169 12 8 6.8707 4.3599 -1.7944 13 7 7.1905 4.9421 0.3250 14 6 8.0239 5.9973 -0.0449 15 6 8.4545 6.9002 0.9153 16 6 9.2911 7.9609 0.5183 17 6 9.7547 8.9141 1.4564 18 1 9.8458 8.6458 2.4986 19 6 10.0952 10.2047 1.0332 20 7 9.8076 10.5915 -0.1821 21 14 10.9604 11.3741 2.2052 22 1 12.4304 11.2111 2.0717 23 1 10.5855 12.7727 1.8755 24 1 10.5531 11.0681 3.6000 25 6 9.6573 8.0427 -0.8426 26 6 9.1836 7.1054 -1.7161 27 7 8.3961 6.1262 -1.3098 28 6 3.2685 1.0433 -0.6108 29 1 2.7331 -1.8439 1.0955 30 1 5.1914 -1.8353 1.0894 31 1 4.7288 2.7199 -1.9208 32 1 6.2152 1.7417 -1.8767 33 1 5.8078 2.8567 0.6858 34 1 6.9778 4.7968 1.2602 35 1 8.1506 6.7945 1.9462 36 1 10.0431 11.4856 -0.4752 37 1 10.3005 8.8380 -1.1893 38 1 9.4585 7.1662 -2.7587 39 1 2.7313 1.8515 -1.0846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365252391.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:57 Heat of formation + Delta-G solvation = 4.292226 kcal Electronic energy + Delta-G solvation = -26681.761094 eV Core-core repulsion = 22503.460137 eV Total energy + Delta-G solvation = -4178.300957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.01831 -41.44025 -40.51918 -39.72082 -37.60788 -36.42590 -35.81271 -35.30117 -32.70370 -32.54440 -32.02944 -30.25706 -27.92542 -27.21231 -24.84969 -23.86347 -23.58905 -23.08907 -21.71275 -19.98096 -19.67416 -19.08146 -18.61276 -17.84920 -17.75600 -17.04247 -16.74803 -16.47740 -16.15297 -16.01649 -15.88072 -15.42092 -15.05083 -14.99464 -14.91557 -14.76398 -14.69420 -14.57174 -14.17402 -14.12062 -13.88865 -13.51743 -13.19741 -13.12838 -12.95293 -12.86881 -12.82054 -12.08018 -12.05655 -11.81917 -11.46730 -11.29097 -11.18313 -10.23137 -10.10233 -9.93051 -9.81440 -9.59685 -8.82536 -8.56939 -6.56474 -0.46884 0.03002 0.86135 1.01500 1.42370 1.53341 1.56114 1.59390 1.59515 1.85754 2.21435 2.31287 2.69369 2.73736 2.87137 3.11334 3.25822 3.39671 3.67327 3.79054 3.98487 4.10777 4.15215 4.42996 4.57641 4.70576 4.76645 4.82505 4.87589 4.96601 4.99910 5.06810 5.08316 5.14015 5.28138 5.41451 5.53059 5.63362 5.66513 5.89789 5.99588 6.27983 6.41064 6.57490 6.81768 6.85363 7.00787 7.62757 7.92481 8.30765 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.021996 B = 0.001905 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.657087 B =14697.712357 C =14883.155518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.281 3.719 3 C -0.045 4.045 4 C -0.015 4.015 5 C -0.145 4.145 6 C 0.140 3.860 7 F -0.137 7.137 8 C -0.143 4.143 9 C 0.183 3.817 10 N -0.726 5.726 11 C 0.692 3.308 12 O -0.580 6.580 13 N -0.658 5.658 14 C 0.366 3.634 15 C -0.312 4.312 16 C 0.117 3.883 17 C -0.480 4.480 18 H 0.088 0.912 19 C 0.032 3.968 20 N -0.821 5.821 21 Si 0.993 3.007 22 H -0.262 1.262 23 H -0.270 1.270 24 H -0.254 1.254 25 C -0.242 4.242 26 C 0.098 3.902 27 N -0.577 5.577 28 C -0.013 4.013 29 H 0.173 0.827 30 H 0.174 0.826 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.410 0.590 34 H 0.423 0.577 35 H 0.124 0.876 36 H 0.291 0.709 37 H 0.120 0.880 38 H 0.137 0.863 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 -20.920 5.738 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.033 4.033 3 C -0.049 4.049 4 C -0.035 4.035 5 C -0.164 4.164 6 C 0.119 3.881 7 F -0.116 7.116 8 C -0.145 4.145 9 C 0.059 3.941 10 N -0.385 5.385 11 C 0.392 3.608 12 O -0.454 6.454 13 N -0.308 5.308 14 C 0.136 3.864 15 C -0.338 4.338 16 C 0.108 3.892 17 C -0.511 4.511 18 H 0.106 0.894 19 C -0.184 4.184 20 N -0.447 5.447 21 Si 0.813 3.187 22 H -0.186 1.186 23 H -0.195 1.195 24 H -0.178 1.178 25 C -0.266 4.266 26 C -0.053 4.053 27 N -0.297 5.297 28 C -0.034 4.034 29 H 0.191 0.809 30 H 0.192 0.808 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.246 0.754 34 H 0.261 0.739 35 H 0.142 0.858 36 H 0.101 0.899 37 H 0.138 0.862 38 H 0.154 0.846 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.443 -21.200 3.830 24.394 hybrid contribution 1.205 1.317 1.411 2.275 sum -10.238 -19.883 5.241 22.970 Atomic orbital electron populations 1.81344 1.13517 1.08948 1.09976 1.25704 0.92536 0.92613 0.92479 1.15955 0.83516 0.99083 1.06352 1.21377 0.92907 0.96109 0.93111 1.21336 0.94419 0.98972 1.01625 1.18135 0.76845 0.95638 0.97469 1.91569 1.29527 1.96319 1.94136 1.19562 0.93988 0.96765 1.04175 1.19892 0.96884 0.87921 0.89381 1.44951 1.56977 1.25783 1.10786 1.16197 0.79202 0.80491 0.84959 1.91002 1.62728 1.74260 1.17423 1.42372 1.49233 1.28731 1.10492 1.17989 0.90780 0.87476 0.90190 1.21368 1.10835 1.02471 0.99171 1.18025 0.87462 0.90606 0.93058 1.19885 1.39342 0.95833 0.96036 0.89400 1.26914 0.93483 1.00560 0.97407 1.69818 1.35186 1.20339 1.19326 0.85038 0.78728 0.76287 0.78670 1.18635 1.19457 1.17752 1.22035 1.06960 1.02274 0.95325 1.21884 0.93841 0.90488 0.99081 1.67277 1.19987 1.26132 1.16319 1.21058 0.91715 0.96695 0.93965 0.80913 0.80840 0.89939 0.91540 0.75421 0.73874 0.85766 0.89854 0.86224 0.84585 0.82801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.12 18.54 19.01 0.35 -8.77 16 2 C 0.28 3.73 15.33 88.33 1.35 5.09 16 3 C -0.05 -0.36 5.73 -21.33 -0.12 -0.48 16 4 C -0.01 -0.05 9.75 22.53 0.22 0.17 16 5 C -0.15 -0.71 10.01 22.27 0.22 -0.49 16 6 C 0.14 1.55 7.25 22.46 0.16 1.71 16 7 F -0.14 -2.26 16.74 44.97 0.75 -1.51 16 8 C -0.14 -1.73 5.25 -19.86 -0.10 -1.83 16 9 C 0.18 3.55 5.47 85.64 0.47 4.01 16 10 N -0.73 -16.57 5.55 -482.30 -2.68 -19.24 16 11 C 0.69 24.53 8.51 179.05 1.52 26.06 16 12 O -0.58 -26.75 14.64 -3.97 -0.06 -26.81 16 13 N -0.66 -23.45 5.40 -322.36 -1.74 -25.19 16 14 C 0.37 17.17 7.41 132.77 0.98 18.15 16 15 C -0.31 -14.92 9.74 23.00 0.22 -14.70 16 16 C 0.12 6.24 5.60 -21.12 -0.12 6.12 16 17 C -0.48 -24.65 9.13 23.52 0.21 -24.44 16 18 H 0.09 4.22 7.87 -2.91 -0.02 4.20 16 19 C 0.03 1.57 5.31 85.29 0.45 2.02 16 20 N -0.82 -41.75 10.70 21.84 0.23 -41.51 16 21 Si 0.99 36.22 29.57 68.60 2.03 38.25 16 22 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 23 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 24 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 25 C -0.24 -13.03 8.73 22.60 0.20 -12.83 16 26 C 0.10 5.05 11.10 84.27 0.94 5.99 16 27 N -0.58 -30.21 7.89 -194.27 -1.53 -31.75 16 28 C -0.01 -0.12 9.37 22.53 0.21 0.09 16 29 H 0.17 -0.27 8.06 -2.91 -0.02 -0.30 16 30 H 0.17 0.08 8.06 -2.91 -0.02 0.05 16 31 H 0.08 1.63 7.95 -2.39 -0.02 1.61 16 32 H 0.07 1.53 8.08 -2.39 -0.02 1.51 16 33 H 0.41 6.56 8.48 -92.71 -0.79 5.78 16 34 H 0.42 11.00 8.72 -92.70 -0.81 10.19 16 35 H 0.12 5.17 8.06 -2.91 -0.02 5.15 16 36 H 0.29 13.31 8.29 -92.71 -0.77 12.55 16 37 H 0.12 6.58 6.11 -2.91 -0.02 6.56 16 38 H 0.14 6.38 8.06 -2.91 -0.02 6.35 16 39 H 0.15 1.20 8.00 -2.91 -0.02 1.18 16 Total: -1.00 -76.34 359.77 3.75 -72.59 By element: Atomic # 1 Polarization: 29.76 SS G_CDS: -0.44 Total: 29.32 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.83 Total: 14.63 kcal Atomic # 7 Polarization: -121.10 SS G_CDS: -5.36 Total: -126.47 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.06 Total: -26.81 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.75 Total: -1.51 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Total: -76.34 3.75 -72.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365252391.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.881 kcal (2) G-P(sol) polarization free energy of solvation -76.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds