Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39650 * 120.13734 * 352.36793 * 3 2 1 5 5 C 1.37943 * 119.89636 * 179.97438 * 4 3 2 6 6 C 1.38342 * 120.17782 * 359.73162 * 5 4 3 7 7 C 1.50704 * 119.86054 * 180.29776 * 6 5 4 8 8 N 1.46503 * 109.46639 * 260.25459 * 7 6 5 9 9 C 1.34773 * 119.99486 * 179.97438 * 8 7 6 10 10 O 1.21573 * 120.00657 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99941 * 179.97438 * 9 8 7 12 12 C 1.39247 * 120.00139 * 174.20068 * 11 9 8 13 13 C 1.39683 * 119.57793 * 341.18662 * 12 11 9 14 14 C 1.38641 * 119.49872 * 179.72331 * 13 12 11 15 15 C 1.38354 * 118.66787 * 0.53516 * 14 13 12 16 16 C 1.40578 * 119.13351 * 359.72578 * 15 14 13 17 17 C 1.41327 * 119.79126 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99884 * 6.33131 * 17 16 15 19 19 C 1.40024 * 120.00512 * 186.32570 * 17 16 15 20 20 N 1.30752 * 119.99477 * 353.67429 * 19 17 16 21 21 Si 1.86798 * 120.00662 * 173.67085 * 19 17 16 22 22 H 1.48495 * 109.47093 * 94.98465 * 21 19 17 23 23 H 1.48494 * 109.47421 * 214.98776 * 21 19 17 24 24 H 1.48505 * 109.46647 * 334.98970 * 21 19 17 25 25 N 1.31905 * 119.57206 * 161.45186 * 12 11 9 26 26 C 1.38556 * 120.28064 * 0.54663 * 6 5 4 27 27 F 1.35097 * 119.95164 * 179.72529 * 26 6 5 28 28 C 1.38205 * 120.09873 * 359.44858 * 26 6 5 29 29 H 1.08001 * 120.05298 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.90771 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.46536 * 20.24702 * 7 6 5 32 32 H 1.08994 * 109.47407 * 140.24860 * 7 6 5 33 33 H 0.96991 * 120.00259 * 359.97438 * 8 7 6 34 34 H 0.96999 * 120.00032 * 354.20959 * 11 9 8 35 35 H 1.08003 * 120.24982 * 359.97438 * 13 12 11 36 36 H 1.07993 * 120.66690 * 180.24114 * 14 13 12 37 37 H 1.08000 * 120.43748 * 179.75003 * 15 14 13 38 38 H 0.97003 * 119.99767 * 179.97438 * 20 19 17 39 39 H 1.07993 * 120.08730 * 180.25081 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -1.1961 0.1604 5 6 4.6491 -1.1898 0.1591 6 6 5.3390 -0.0021 -0.0062 7 6 6.8460 -0.0044 -0.0132 8 7 7.3410 0.4104 1.3018 9 6 8.6672 0.4820 1.5306 10 8 9.4528 0.2019 0.6461 11 7 9.1227 0.8641 2.7402 12 6 10.4871 0.8225 3.0154 13 6 11.3270 0.0381 2.2215 14 6 12.6860 0.0024 2.4934 15 6 13.1695 0.7421 3.5580 16 6 12.2724 1.5076 4.3231 17 6 12.7514 2.2688 5.4132 18 1 13.8135 2.3435 5.5945 19 6 11.8491 2.9264 6.2583 20 7 10.5739 2.9395 5.9696 21 14 12.4669 3.7846 7.7981 22 1 12.6937 5.2228 7.5059 23 1 11.4563 3.6523 8.8780 24 1 13.7422 3.1611 8.2343 25 7 10.9689 1.5203 4.0258 26 6 4.6503 1.1903 -0.1602 27 9 5.3307 2.3470 -0.3156 28 6 3.2683 1.1973 -0.1608 29 1 2.7333 -2.1252 0.2844 30 1 5.1920 -2.1152 0.2827 31 1 7.2067 -1.0084 -0.2370 32 1 7.2069 0.6891 -0.7727 33 1 6.7143 0.6336 2.0076 34 1 8.5001 1.1680 3.4191 35 1 10.9214 -0.5331 1.3996 36 1 13.3531 -0.5946 1.8894 37 1 14.2225 0.7319 3.7978 38 1 9.9487 3.3947 6.5551 39 1 2.7317 2.1263 -0.2849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414490271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = 33.284547 kcal Electronic energy + Delta-G solvation = -26930.412630 eV Core-core repulsion = 22753.368874 eV Total energy + Delta-G solvation = -4177.043756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.35466 -40.30621 -39.76094 -37.92100 -37.03571 -35.15821 -34.21019 -33.28211 -32.07407 -31.26100 -30.38563 -29.15640 -27.06193 -25.40459 -23.60321 -23.12236 -21.81205 -21.55858 -20.30429 -19.83230 -18.38361 -17.36974 -17.28558 -16.87796 -16.56912 -16.12514 -15.80627 -15.33837 -15.13135 -14.60917 -14.60293 -14.44306 -14.40813 -14.19526 -14.01408 -13.61091 -13.48862 -13.21366 -12.91608 -12.84824 -12.50898 -12.31597 -12.13270 -11.96576 -11.77371 -11.27062 -11.10516 -10.90862 -10.66340 -10.12579 -9.85382 -9.73510 -9.44690 -9.25893 -9.08679 -8.99137 -8.02075 -7.67029 -7.06036 -6.41828 -4.49137 -0.05682 0.52587 2.09249 2.19214 2.67731 2.91910 2.96179 3.09035 3.12365 3.13499 3.22510 3.25482 3.66348 3.74780 3.95398 4.04097 4.11757 4.30647 4.52986 4.59112 4.79249 4.95429 5.09509 5.28865 5.38978 5.47758 5.55207 5.72663 5.91211 6.10031 6.15417 6.36519 6.44038 6.70717 6.82734 6.90298 6.92260 7.08418 7.20788 7.51282 7.61680 7.91150 8.06251 8.16907 8.41042 8.70717 8.87598 9.02453 10.05868 10.31570 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015816 B = 0.002224 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.910097 B =12584.828463 C =13752.429994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C 0.253 3.747 3 C 0.007 3.993 4 C -0.082 4.082 5 C -0.069 4.069 6 C -0.110 4.110 7 C 0.179 3.821 8 N -0.745 5.745 9 C 0.709 3.291 10 O -0.568 6.568 11 N -0.657 5.657 12 C 0.373 3.627 13 C -0.312 4.312 14 C -0.049 4.049 15 C -0.291 4.291 16 C 0.280 3.720 17 C -0.436 4.436 18 H 0.085 0.915 19 C 0.071 3.929 20 N -0.723 5.723 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.261 1.261 25 N -0.508 5.508 26 C 0.121 3.879 27 F -0.122 7.122 28 C -0.110 4.110 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.397 0.603 34 H 0.404 0.596 35 H 0.133 0.867 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.270 0.730 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.216 -5.971 -9.051 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.063 4.063 3 C 0.003 3.997 4 C -0.103 4.103 5 C -0.087 4.087 6 C -0.113 4.113 7 C 0.055 3.945 8 N -0.403 5.403 9 C 0.409 3.591 10 O -0.444 6.444 11 N -0.304 5.304 12 C 0.138 3.862 13 C -0.337 4.337 14 C -0.074 4.074 15 C -0.314 4.314 16 C 0.154 3.846 17 C -0.468 4.468 18 H 0.103 0.897 19 C -0.153 4.153 20 N -0.345 5.345 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.185 1.185 25 N -0.227 5.227 26 C 0.101 3.899 27 F -0.100 7.100 28 C -0.132 4.132 29 H 0.161 0.839 30 H 0.168 0.832 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.230 0.770 34 H 0.239 0.761 35 H 0.150 0.850 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.000 -5.612 -9.303 20.175 hybrid contribution 0.621 0.527 0.847 1.175 sum -16.379 -5.085 -8.455 19.121 Atomic orbital electron populations 1.81303 1.11898 1.06789 1.07932 1.25510 0.92428 0.94182 0.94172 1.15701 0.84536 0.94279 1.05162 1.21272 0.94138 0.97051 0.97834 1.21017 0.93313 0.97835 0.96580 1.20319 0.96753 0.92429 1.01761 1.19952 0.86508 1.02443 0.85629 1.45047 1.05603 1.75084 1.14548 1.15689 0.81922 0.78662 0.82795 1.90851 1.53887 1.55521 1.44137 1.42233 1.07584 1.66806 1.13749 1.18209 0.82025 0.92516 0.93439 1.21606 0.93867 1.10532 1.07687 1.20804 0.94539 0.96604 0.95443 1.21703 0.99369 1.08098 1.02207 1.18167 0.85545 0.89810 0.91126 1.19548 0.94412 1.25161 1.07663 0.89690 1.26034 0.94669 0.95460 0.99130 1.70127 1.02526 1.28832 1.33055 0.86334 0.79785 0.79920 0.80888 1.19588 1.20188 1.18505 1.68010 1.15619 1.21875 1.17208 1.17307 0.89263 0.81962 1.01326 1.91606 1.79622 1.46232 1.92529 1.21128 0.92369 0.98744 1.00910 0.83903 0.83242 0.89577 0.89907 0.76962 0.76124 0.84958 0.88367 0.88273 0.91909 0.83413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.08 18.54 41.84 0.78 -3.31 16 2 C 0.25 1.89 15.33 -22.47 -0.34 1.55 16 3 C 0.01 0.04 5.73 -106.94 -0.61 -0.57 16 4 C -0.08 -0.34 9.75 -39.16 -0.38 -0.72 16 5 C -0.07 -0.31 9.65 -39.65 -0.38 -0.69 16 6 C -0.11 -0.74 5.26 -104.46 -0.55 -1.29 16 7 C 0.18 1.68 5.51 -5.19 -0.03 1.66 16 8 N -0.75 -8.82 5.55 -66.41 -0.37 -9.19 16 9 C 0.71 12.40 8.40 -86.92 -0.73 11.67 16 10 O -0.57 -11.83 13.14 5.30 0.07 -11.76 16 11 N -0.66 -12.86 5.42 -15.79 -0.09 -12.94 16 12 C 0.37 9.14 7.51 -154.99 -1.16 7.98 16 13 C -0.31 -7.55 8.83 -38.89 -0.34 -7.89 16 14 C -0.05 -1.16 10.15 -39.39 -0.40 -1.56 16 15 C -0.29 -7.28 9.83 -38.66 -0.38 -7.66 16 16 C 0.28 7.67 6.54 -85.00 -0.56 7.12 16 17 C -0.44 -11.57 9.13 -37.74 -0.34 -11.91 16 18 H 0.08 2.11 7.86 -52.48 -0.41 1.70 16 19 C 0.07 1.79 5.49 -17.34 -0.10 1.69 16 20 N -0.72 -18.62 11.49 55.55 0.64 -17.98 16 21 Si 0.91 18.33 29.56 -169.99 -5.03 13.31 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 N -0.51 -13.74 7.92 -10.26 -0.08 -13.82 16 26 C 0.12 0.89 7.23 -39.48 -0.29 0.60 16 27 F -0.12 -1.18 16.64 2.25 0.04 -1.14 16 28 C -0.11 -0.64 9.74 -39.09 -0.38 -1.02 16 29 H 0.14 0.32 8.06 -52.49 -0.42 -0.11 16 30 H 0.15 0.43 8.03 -52.49 -0.42 0.01 16 31 H 0.09 0.76 8.00 -51.93 -0.42 0.35 16 32 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 33 H 0.40 3.80 8.48 -40.82 -0.35 3.45 16 34 H 0.40 7.04 8.84 -40.82 -0.36 6.68 16 35 H 0.13 3.15 5.33 -52.50 -0.28 2.87 16 36 H 0.10 1.99 8.06 -52.49 -0.42 1.57 16 37 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 38 H 0.27 6.27 8.29 -40.82 -0.34 5.94 16 39 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -33.25 358.67 -9.09 -42.34 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -3.47 Total: 10.15 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -6.98 Total: -1.06 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.88 Total: -57.23 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.07 Total: -11.76 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.25 -9.09 -42.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414490271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.621 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds