Wall clock time and date at job start Sat Apr 11 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39650 * 120.13734 * 352.36793 * 3 2 1 5 5 C 1.37943 * 119.89636 * 179.97438 * 4 3 2 6 6 C 1.38342 * 120.17782 * 359.73162 * 5 4 3 7 7 C 1.50704 * 119.86054 * 180.29776 * 6 5 4 8 8 N 1.46503 * 109.46639 * 260.25459 * 7 6 5 9 9 C 1.34773 * 119.99486 * 179.97438 * 8 7 6 10 10 O 1.21573 * 120.00657 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99941 * 179.97438 * 9 8 7 12 12 C 1.39247 * 120.00139 * 174.20068 * 11 9 8 13 13 C 1.39683 * 119.57793 * 341.18662 * 12 11 9 14 14 C 1.38641 * 119.49872 * 179.72331 * 13 12 11 15 15 C 1.38354 * 118.66787 * 0.53516 * 14 13 12 16 16 C 1.40578 * 119.13351 * 359.72578 * 15 14 13 17 17 C 1.41327 * 119.79126 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99884 * 6.33131 * 17 16 15 19 19 C 1.40024 * 120.00512 * 186.32570 * 17 16 15 20 20 N 1.30752 * 119.99477 * 353.67429 * 19 17 16 21 21 Si 1.86798 * 120.00662 * 173.67085 * 19 17 16 22 22 H 1.48495 * 109.47093 * 94.98465 * 21 19 17 23 23 H 1.48494 * 109.47421 * 214.98776 * 21 19 17 24 24 H 1.48505 * 109.46647 * 334.98970 * 21 19 17 25 25 N 1.31905 * 119.57206 * 161.45186 * 12 11 9 26 26 C 1.38556 * 120.28064 * 0.54663 * 6 5 4 27 27 F 1.35097 * 119.95164 * 179.72529 * 26 6 5 28 28 C 1.38205 * 120.09873 * 359.44858 * 26 6 5 29 29 H 1.08001 * 120.05298 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.90771 * 180.02562 * 5 4 3 31 31 H 1.08999 * 109.46536 * 20.24702 * 7 6 5 32 32 H 1.08994 * 109.47407 * 140.24860 * 7 6 5 33 33 H 0.96991 * 120.00259 * 359.97438 * 8 7 6 34 34 H 0.96999 * 120.00032 * 354.20959 * 11 9 8 35 35 H 1.08003 * 120.24982 * 359.97438 * 13 12 11 36 36 H 1.07993 * 120.66690 * 180.24114 * 14 13 12 37 37 H 1.08000 * 120.43748 * 179.75003 * 15 14 13 38 38 H 0.97003 * 119.99767 * 179.97438 * 20 19 17 39 39 H 1.07993 * 120.08730 * 180.25081 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2697 -1.1961 0.1604 5 6 4.6491 -1.1898 0.1591 6 6 5.3390 -0.0021 -0.0062 7 6 6.8460 -0.0044 -0.0132 8 7 7.3410 0.4104 1.3018 9 6 8.6672 0.4820 1.5306 10 8 9.4528 0.2019 0.6461 11 7 9.1227 0.8641 2.7402 12 6 10.4871 0.8225 3.0154 13 6 11.3270 0.0381 2.2215 14 6 12.6860 0.0024 2.4934 15 6 13.1695 0.7421 3.5580 16 6 12.2724 1.5076 4.3231 17 6 12.7514 2.2688 5.4132 18 1 13.8135 2.3435 5.5945 19 6 11.8491 2.9264 6.2583 20 7 10.5739 2.9395 5.9696 21 14 12.4669 3.7846 7.7981 22 1 12.6937 5.2228 7.5059 23 1 11.4563 3.6523 8.8780 24 1 13.7422 3.1611 8.2343 25 7 10.9689 1.5203 4.0258 26 6 4.6503 1.1903 -0.1602 27 9 5.3307 2.3470 -0.3156 28 6 3.2683 1.1973 -0.1608 29 1 2.7333 -2.1252 0.2844 30 1 5.1920 -2.1152 0.2827 31 1 7.2067 -1.0084 -0.2370 32 1 7.2069 0.6891 -0.7727 33 1 6.7143 0.6336 2.0076 34 1 8.5001 1.1680 3.4191 35 1 10.9214 -0.5331 1.3996 36 1 13.3531 -0.5946 1.8894 37 1 14.2225 0.7319 3.7978 38 1 9.9487 3.3947 6.5551 39 1 2.7317 2.1263 -0.2849 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414490271.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:06 Heat of formation + Delta-G solvation = 13.096809 kcal Electronic energy + Delta-G solvation = -26931.288036 eV Core-core repulsion = 22753.368874 eV Total energy + Delta-G solvation = -4177.919162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.99648 -41.60399 -40.49931 -39.62464 -37.74792 -36.28957 -35.79470 -35.06011 -32.88100 -32.27864 -31.74724 -30.87305 -28.00654 -27.21109 -24.25817 -23.93635 -23.45054 -23.04516 -21.82839 -20.36775 -19.87557 -19.06570 -18.37388 -17.85399 -17.14691 -17.02784 -16.73427 -16.69755 -16.49295 -16.17950 -16.04691 -15.55934 -15.07501 -15.03562 -15.00968 -14.66615 -14.62502 -14.46745 -14.09146 -13.93837 -13.77980 -13.51290 -13.07518 -12.91206 -12.86795 -12.72400 -12.61048 -12.54575 -12.30850 -11.83242 -11.56256 -11.06485 -10.84834 -10.19786 -10.14947 -9.92206 -9.83872 -9.59222 -8.89177 -8.28370 -6.46479 -0.57096 0.08967 0.86251 1.16618 1.44598 1.46649 1.50047 1.54992 1.59982 1.86820 2.15450 2.26560 2.58569 2.66476 2.91783 3.23591 3.25944 3.41408 3.66732 3.91264 3.96189 4.09503 4.36640 4.47298 4.52629 4.65420 4.70865 4.82530 4.92413 4.97144 4.98519 5.02043 5.12859 5.22040 5.27141 5.38211 5.62039 5.64088 5.73248 5.89164 6.01819 6.24692 6.32714 6.32881 6.77410 6.92951 7.05464 7.52039 8.14855 8.47756 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015816 B = 0.002224 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.910097 B =12584.828463 C =13752.429994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.279 3.721 3 C 0.006 3.994 4 C -0.064 4.064 5 C -0.057 4.057 6 C -0.110 4.110 7 C 0.177 3.823 8 N -0.722 5.722 9 C 0.709 3.291 10 O -0.601 6.601 11 N -0.656 5.656 12 C 0.364 3.636 13 C -0.323 4.323 14 C -0.048 4.048 15 C -0.311 4.311 16 C 0.245 3.755 17 C -0.467 4.467 18 H 0.090 0.910 19 C 0.026 3.974 20 N -0.753 5.753 21 Si 0.987 3.013 22 H -0.266 1.266 23 H -0.267 1.267 24 H -0.257 1.257 25 N -0.534 5.534 26 C 0.104 3.896 27 F -0.141 7.141 28 C -0.104 4.104 29 H 0.170 0.830 30 H 0.174 0.826 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.410 0.590 34 H 0.412 0.588 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.279 0.721 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.090 -6.859 -8.640 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.036 4.036 3 C 0.002 3.998 4 C -0.084 4.084 5 C -0.076 4.076 6 C -0.112 4.112 7 C 0.054 3.946 8 N -0.379 5.379 9 C 0.409 3.591 10 O -0.481 6.481 11 N -0.303 5.303 12 C 0.128 3.872 13 C -0.348 4.348 14 C -0.073 4.073 15 C -0.333 4.333 16 C 0.119 3.881 17 C -0.499 4.499 18 H 0.108 0.892 19 C -0.195 4.195 20 N -0.375 5.375 21 Si 0.807 3.193 22 H -0.190 1.190 23 H -0.192 1.192 24 H -0.180 1.180 25 N -0.254 5.254 26 C 0.084 3.916 27 F -0.120 7.120 28 C -0.126 4.126 29 H 0.188 0.812 30 H 0.192 0.808 31 H 0.116 0.884 32 H 0.086 0.914 33 H 0.246 0.754 34 H 0.248 0.752 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.130 0.870 38 H 0.089 0.911 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.945 -6.513 -8.917 21.070 hybrid contribution 0.801 0.744 0.604 1.249 sum -17.145 -5.770 -8.312 19.908 Atomic orbital electron populations 1.81337 1.13341 1.08342 1.09767 1.25656 0.92494 0.92739 0.92707 1.15720 0.83472 0.94828 1.05785 1.21553 0.93916 0.97425 0.95551 1.21238 0.93450 0.97723 0.95150 1.20124 0.94952 0.93186 1.02932 1.20080 0.88426 1.02486 0.83647 1.44924 1.03613 1.73328 1.15989 1.15823 0.83386 0.78233 0.81631 1.90809 1.55397 1.56988 1.44864 1.42157 1.06096 1.67194 1.14869 1.18557 0.83996 0.91853 0.92780 1.21842 0.94391 1.10739 1.07849 1.21177 0.94926 0.96098 0.95052 1.21874 0.99858 1.08727 1.02881 1.18681 0.86452 0.90827 0.92141 1.19915 0.95178 1.26257 1.08546 0.89166 1.26938 0.94664 0.95763 1.02161 1.70197 1.03708 1.29197 1.34438 0.85128 0.79313 0.78476 0.76368 1.19047 1.19192 1.18032 1.68036 1.15838 1.23095 1.18451 1.17461 0.89757 0.81551 1.02834 1.91560 1.80083 1.47389 1.92933 1.21152 0.91786 0.99389 1.00231 0.81228 0.80843 0.88405 0.91440 0.75355 0.75154 0.84447 0.85147 0.87008 0.91076 0.82636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.71 18.54 19.01 0.35 -8.36 16 2 C 0.28 3.69 15.33 88.33 1.35 5.04 16 3 C 0.01 0.05 5.73 -21.37 -0.12 -0.07 16 4 C -0.06 -0.29 9.75 22.54 0.22 -0.07 16 5 C -0.06 -0.32 9.65 22.22 0.21 -0.10 16 6 C -0.11 -1.24 5.26 -19.76 -0.10 -1.35 16 7 C 0.18 3.09 5.51 85.63 0.47 3.56 16 8 N -0.72 -16.29 5.55 -482.31 -2.68 -18.96 16 9 C 0.71 24.58 8.40 179.05 1.50 26.08 16 10 O -0.60 -25.05 13.14 -3.95 -0.05 -25.11 16 11 N -0.66 -25.81 5.42 -322.12 -1.75 -27.56 16 12 C 0.36 18.14 7.51 133.26 1.00 19.14 16 13 C -0.32 -15.73 8.83 22.72 0.20 -15.53 16 14 C -0.05 -2.25 10.15 22.39 0.23 -2.03 16 15 C -0.31 -15.76 9.83 22.87 0.22 -15.53 16 16 C 0.25 13.78 6.54 40.19 0.26 14.04 16 17 C -0.47 -25.25 9.13 23.46 0.21 -25.04 16 18 H 0.09 4.56 7.86 -2.91 -0.02 4.54 16 19 C 0.03 1.33 5.49 85.29 0.47 1.80 16 20 N -0.75 -39.14 11.49 21.84 0.25 -38.89 16 21 Si 0.99 37.39 29.56 68.60 2.03 39.42 16 22 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 25 N -0.53 -29.57 7.92 -186.36 -1.48 -31.04 16 26 C 0.10 1.38 7.23 22.34 0.16 1.54 16 27 F -0.14 -2.71 16.64 44.97 0.75 -1.96 16 28 C -0.10 -1.04 9.74 22.59 0.22 -0.82 16 29 H 0.17 -0.04 8.06 -2.91 -0.02 -0.06 16 30 H 0.17 0.21 8.03 -2.91 -0.02 0.19 16 31 H 0.10 1.53 8.00 -2.39 -0.02 1.51 16 32 H 0.07 1.43 7.94 -2.39 -0.02 1.41 16 33 H 0.41 7.23 8.48 -92.71 -0.79 6.45 16 34 H 0.41 14.46 8.84 -92.71 -0.82 13.64 16 35 H 0.14 6.53 5.33 -3.14 -0.02 6.52 16 36 H 0.13 5.11 8.06 -2.91 -0.02 5.09 16 37 H 0.11 5.19 8.06 -2.91 -0.02 5.16 16 38 H 0.28 12.96 8.29 -92.71 -0.77 12.19 16 39 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -74.16 358.67 3.50 -70.66 By element: Atomic # 1 Polarization: 31.60 SS G_CDS: -0.45 Total: 31.15 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 6.52 Total: 10.65 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -5.30 Total: -124.82 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.05 Total: -25.11 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.75 Total: -1.96 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -74.16 3.50 -70.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414490271.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.761 kcal (2) G-P(sol) polarization free energy of solvation -74.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds