Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38074 * 120.02789 * 2 1 4 4 C 1.38503 * 120.05860 * 180.24917 * 3 2 1 5 5 F 1.35096 * 119.95106 * 179.75919 * 4 3 2 6 6 C 1.38554 * 120.10414 * 359.78559 * 4 3 2 7 7 C 1.38026 * 120.05654 * 359.97438 * 6 4 3 8 8 C 1.38965 * 120.02925 * 179.78068 * 2 1 3 9 9 N 1.39728 * 120.05419 * 0.02562 * 8 2 1 10 10 C 1.36735 * 119.99839 * 106.33214 * 9 8 2 11 11 H 1.08003 * 120.00017 * 54.92404 * 10 9 8 12 12 C 1.39049 * 120.00071 * 234.93000 * 10 9 8 13 13 N 1.31333 * 119.99742 * 336.76578 * 12 10 9 14 14 Si 1.86798 * 120.00410 * 156.76366 * 12 10 9 15 15 H 1.48498 * 109.47210 * 64.98917 * 14 12 10 16 16 H 1.48497 * 109.47496 * 184.99515 * 14 12 10 17 17 H 1.48504 * 109.46927 * 304.99346 * 14 12 10 18 18 C 1.34776 * 119.99806 * 286.33231 * 9 8 2 19 19 O 1.21694 * 119.99566 * 209.29984 * 18 9 8 20 20 C 1.46928 * 120.00271 * 29.30419 * 18 9 8 21 21 C 1.37967 * 119.95542 * 115.43510 * 20 18 9 22 22 C 1.39751 * 119.91460 * 179.81461 * 21 20 18 23 23 C 1.36379 * 119.83490 * 0.43753 * 22 21 20 24 24 C 1.40742 * 119.74169 * 359.54386 * 23 22 21 25 25 N 1.32825 * 132.74640 * 180.25797 * 24 23 22 26 26 C 1.32388 * 109.74269 * 179.97438 * 25 24 23 27 27 N 1.31376 * 109.62131 * 359.97438 * 26 25 24 28 28 N 1.36570 * 119.88161 * 0.24926 * 24 23 22 29 29 H 1.08999 * 109.47809 * 270.21618 * 1 2 3 30 30 H 1.09003 * 109.47046 * 30.21875 * 1 2 3 31 31 H 1.09001 * 109.46837 * 150.21744 * 1 2 3 32 32 H 1.08004 * 119.97092 * 0.02562 * 3 2 1 33 33 H 1.08006 * 119.96439 * 179.97438 * 6 4 3 34 34 H 1.08001 * 120.02297 * 179.97438 * 7 6 4 35 35 H 0.97000 * 120.00239 * 184.55476 * 13 12 10 36 36 H 1.07998 * 120.04151 * 0.03982 * 21 20 18 37 37 H 1.07999 * 120.08293 * 180.25642 * 22 21 20 38 38 H 1.08003 * 120.13211 * 179.81858 * 23 22 21 39 39 H 1.08000 * 125.19062 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1954 0.0000 4 6 3.5830 1.1962 -0.0052 5 9 4.2568 2.3671 -0.0101 6 6 4.2786 -0.0021 -0.0060 7 6 3.5924 -1.1997 -0.0010 8 6 2.2024 -1.2031 0.0046 9 7 1.5055 -2.4142 0.0087 10 6 1.4537 -3.1769 -1.1250 11 1 2.3675 -3.4789 -1.6150 12 6 0.2243 -3.5637 -1.6471 13 7 -0.8330 -3.6134 -0.8695 14 14 0.0765 -4.0125 -3.4543 15 1 0.8766 -5.2331 -3.7282 16 1 -1.3480 -4.2697 -3.7856 17 1 0.5834 -2.8914 -4.2858 18 6 0.8845 -2.8305 1.1301 19 8 0.7484 -4.0207 1.3440 20 6 0.3719 -1.8474 2.0942 21 6 -0.9848 -1.7529 2.3263 22 6 -1.4711 -0.8202 3.2464 23 6 -0.6027 -0.0004 3.9050 24 6 0.7792 -0.1062 3.6602 25 7 1.8329 0.5402 4.1461 26 6 2.9402 0.0694 3.5938 27 7 2.6376 -0.8857 2.7439 28 7 1.2428 -1.0245 2.7619 29 1 -0.3635 0.0039 1.0276 30 1 -0.3633 0.8880 -0.5172 31 1 -0.3633 -0.8919 -0.5105 32 1 1.6579 2.1308 0.0004 33 1 5.3586 0.0011 -0.0104 34 1 4.1352 -2.1335 -0.0020 35 1 -1.6753 -3.9460 -1.2169 36 1 -1.6698 -2.4014 1.8004 37 1 -2.5323 -0.7467 3.4333 38 1 -0.9736 0.7242 4.6148 39 1 3.9397 0.4168 3.8096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001438215428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = 96.852383 kcal Electronic energy + Delta-G solvation = -31041.070717 eV Core-core repulsion = 26866.783470 eV Total energy + Delta-G solvation = -4174.287247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.48794 -42.37563 -39.74004 -37.98345 -36.99210 -34.48134 -33.30507 -32.23003 -32.05060 -30.60467 -29.55093 -28.77152 -26.48633 -25.72453 -23.93997 -23.10598 -22.44481 -22.03002 -21.19791 -19.59136 -17.80763 -17.42864 -17.32583 -16.73668 -16.38204 -16.08355 -15.88906 -15.45470 -15.16284 -14.94930 -14.31826 -14.17948 -13.91335 -13.65865 -13.34517 -13.10188 -12.83899 -12.66849 -12.39643 -12.29605 -12.28939 -11.93617 -11.63316 -11.45942 -11.31311 -11.21855 -11.04646 -10.89369 -10.76449 -10.64370 -10.46739 -9.80949 -9.28088 -9.19542 -8.79756 -8.42213 -8.10698 -7.80017 -7.42515 -6.54899 -4.33020 0.78492 1.27453 1.65843 1.73454 2.30223 3.00050 3.10048 3.15605 3.17339 3.55891 3.71821 3.99144 4.07942 4.22193 4.36229 4.62474 4.68716 4.83107 5.06013 5.13372 5.16767 5.21068 5.25181 5.48285 5.57574 5.67641 5.82161 5.99668 6.02520 6.10279 6.20176 6.27174 6.37409 6.48660 6.55201 6.57838 6.66840 6.69591 6.77803 7.03731 7.11714 7.30836 7.39535 7.99288 8.26450 8.65516 8.74414 9.10765 9.70975 10.51117 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.006887 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.931302 B = 4064.829038 C = 5573.827256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.149 4.149 4 C 0.078 3.922 5 F -0.151 7.151 6 C -0.147 4.147 7 C -0.069 4.069 8 C 0.170 3.830 9 N -0.421 5.421 10 C -0.339 4.339 11 H 0.086 0.914 12 C 0.062 3.938 13 N -0.838 5.838 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.270 1.270 18 C 0.562 3.438 19 O -0.500 6.500 20 C 0.143 3.857 21 C -0.124 4.124 22 C -0.060 4.060 23 C -0.118 4.118 24 C 0.274 3.726 25 N -0.554 5.554 26 C 0.225 3.775 27 N -0.319 5.319 28 N -0.266 5.266 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.275 0.725 36 H 0.169 0.831 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 8.260 4.310 9.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.074 4.074 3 C -0.169 4.169 4 C 0.059 3.941 5 F -0.130 7.130 6 C -0.167 4.167 7 C -0.089 4.089 8 C 0.079 3.921 9 N -0.141 5.141 10 C -0.464 4.464 11 H 0.104 0.896 12 C -0.149 4.149 13 N -0.471 5.471 14 Si 0.744 3.256 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.195 1.195 18 C 0.349 3.651 19 O -0.373 6.373 20 C 0.030 3.970 21 C -0.147 4.147 22 C -0.085 4.085 23 C -0.140 4.140 24 C 0.022 3.978 25 N -0.285 5.285 26 C -0.076 4.076 27 N -0.149 5.149 28 N -0.043 5.043 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.085 0.915 36 H 0.187 0.813 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.039 7.520 4.266 8.646 hybrid contribution -0.207 0.118 -0.882 0.914 sum -0.168 7.638 3.384 8.356 Atomic orbital electron populations 1.21097 0.90918 1.04044 1.02101 1.19995 0.96459 0.91776 0.99174 1.20705 0.92173 0.98359 1.05654 1.17533 0.89925 0.80900 1.05791 1.91428 1.80541 1.46555 1.94430 1.20790 0.99908 0.90903 1.05063 1.20976 0.93316 0.97347 0.97236 1.17964 0.90892 0.86558 0.96730 1.40388 1.48619 1.15846 1.09222 1.18968 0.93184 1.34455 0.99787 0.89599 1.25579 0.94942 0.95348 0.99025 1.69788 1.02157 1.39781 1.35391 0.86139 0.77528 0.79202 0.82691 1.19688 1.20740 1.19487 1.17170 0.81859 0.86377 0.79711 1.90699 1.57047 1.16000 1.73580 1.21415 0.89263 0.91437 0.94914 1.21408 0.92116 1.00978 1.00187 1.21182 1.00797 0.93019 0.93541 1.20267 0.87207 1.02924 1.03569 1.21763 0.95863 0.89493 0.90706 1.70749 0.96295 1.30351 1.31097 1.26006 0.99001 0.91521 0.91036 1.78778 0.85420 1.24590 1.26146 1.47959 1.06349 1.23302 1.26655 0.91947 0.92338 0.88634 0.85929 0.85443 0.85382 0.91492 0.81339 0.83192 0.83048 0.76714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.19 36.00 0.29 -2.02 16 2 C -0.07 -1.39 4.51 -104.41 -0.47 -1.87 16 3 C -0.15 -2.64 9.67 -39.54 -0.38 -3.02 16 4 C 0.08 1.33 7.30 -39.37 -0.29 1.04 16 5 F -0.15 -2.48 17.26 2.25 0.04 -2.44 16 6 C -0.15 -2.44 10.02 -39.54 -0.40 -2.84 16 7 C -0.07 -1.31 8.84 -39.38 -0.35 -1.66 16 8 C 0.17 3.59 3.05 -83.71 -0.26 3.33 16 9 N -0.42 -10.04 1.74 -60.28 -0.10 -10.15 16 10 C -0.34 -8.61 8.74 -15.06 -0.13 -8.74 16 11 H 0.09 2.16 7.93 -52.48 -0.42 1.75 16 12 C 0.06 1.52 5.42 -17.46 -0.09 1.43 16 13 N -0.84 -20.98 11.61 55.50 0.64 -20.33 16 14 Si 0.92 19.30 29.62 -169.99 -5.03 14.27 16 15 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 16 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 18 C 0.56 13.69 5.12 -12.74 -0.07 13.62 16 19 O -0.50 -14.02 16.49 5.19 0.09 -13.93 16 20 C 0.14 2.90 3.46 -82.06 -0.28 2.62 16 21 C -0.12 -2.09 8.18 -39.12 -0.32 -2.41 16 22 C -0.06 -0.75 9.60 -39.69 -0.38 -1.14 16 23 C -0.12 -1.59 10.07 -39.31 -0.40 -1.99 16 24 C 0.27 4.73 7.78 -156.36 -1.22 3.51 16 25 N -0.55 -9.59 11.24 -13.99 -0.16 -9.75 16 26 C 0.22 3.73 12.98 -92.00 -1.19 2.53 16 27 N -0.32 -6.08 9.68 29.25 0.28 -5.80 16 28 N -0.27 -5.12 2.75 -8.83 -0.02 -5.14 16 29 H 0.06 1.10 4.48 -51.93 -0.23 0.87 16 30 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 31 H 0.09 2.03 7.37 -51.93 -0.38 1.65 16 32 H 0.12 1.95 8.06 -52.48 -0.42 1.53 16 33 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.13 2.40 8.06 -52.49 -0.42 1.97 16 35 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 36 H 0.17 2.91 8.06 -52.49 -0.42 2.49 16 37 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.15 1.57 8.06 -52.48 -0.42 1.14 16 39 H 0.22 2.69 8.06 -52.49 -0.42 2.27 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -30.59 337.26 -8.66 -39.25 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -3.55 Total: 6.53 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -5.93 Total: 2.41 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.64 Total: -51.17 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.09 Total: -13.93 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.59 -8.66 -39.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438215428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.105 kcal (2) G-P(sol) polarization free energy of solvation -30.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds