Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38074 * 120.02789 * 2 1 4 4 C 1.38503 * 120.05860 * 180.24917 * 3 2 1 5 5 F 1.35096 * 119.95106 * 179.75919 * 4 3 2 6 6 C 1.38554 * 120.10414 * 359.78559 * 4 3 2 7 7 C 1.38026 * 120.05654 * 359.97438 * 6 4 3 8 8 C 1.38965 * 120.02925 * 179.78068 * 2 1 3 9 9 N 1.39728 * 120.05419 * 0.02562 * 8 2 1 10 10 C 1.36735 * 119.99839 * 106.33214 * 9 8 2 11 11 H 1.08003 * 120.00017 * 54.92404 * 10 9 8 12 12 C 1.39049 * 120.00071 * 234.93000 * 10 9 8 13 13 N 1.31333 * 119.99742 * 336.76578 * 12 10 9 14 14 Si 1.86798 * 120.00410 * 156.76366 * 12 10 9 15 15 H 1.48498 * 109.47210 * 64.98917 * 14 12 10 16 16 H 1.48497 * 109.47496 * 184.99515 * 14 12 10 17 17 H 1.48504 * 109.46927 * 304.99346 * 14 12 10 18 18 C 1.34776 * 119.99806 * 286.33231 * 9 8 2 19 19 O 1.21694 * 119.99566 * 209.29984 * 18 9 8 20 20 C 1.46928 * 120.00271 * 29.30419 * 18 9 8 21 21 C 1.37967 * 119.95542 * 115.43510 * 20 18 9 22 22 C 1.39751 * 119.91460 * 179.81461 * 21 20 18 23 23 C 1.36379 * 119.83490 * 0.43753 * 22 21 20 24 24 C 1.40742 * 119.74169 * 359.54386 * 23 22 21 25 25 N 1.32825 * 132.74640 * 180.25797 * 24 23 22 26 26 C 1.32388 * 109.74269 * 179.97438 * 25 24 23 27 27 N 1.31376 * 109.62131 * 359.97438 * 26 25 24 28 28 N 1.36570 * 119.88161 * 0.24926 * 24 23 22 29 29 H 1.08999 * 109.47809 * 270.21618 * 1 2 3 30 30 H 1.09003 * 109.47046 * 30.21875 * 1 2 3 31 31 H 1.09001 * 109.46837 * 150.21744 * 1 2 3 32 32 H 1.08004 * 119.97092 * 0.02562 * 3 2 1 33 33 H 1.08006 * 119.96439 * 179.97438 * 6 4 3 34 34 H 1.08001 * 120.02297 * 179.97438 * 7 6 4 35 35 H 0.97000 * 120.00239 * 184.55476 * 13 12 10 36 36 H 1.07998 * 120.04151 * 0.03982 * 21 20 18 37 37 H 1.07999 * 120.08293 * 180.25642 * 22 21 20 38 38 H 1.08003 * 120.13211 * 179.81858 * 23 22 21 39 39 H 1.08000 * 125.19062 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1954 0.0000 4 6 3.5830 1.1962 -0.0052 5 9 4.2568 2.3671 -0.0101 6 6 4.2786 -0.0021 -0.0060 7 6 3.5924 -1.1997 -0.0010 8 6 2.2024 -1.2031 0.0046 9 7 1.5055 -2.4142 0.0087 10 6 1.4537 -3.1769 -1.1250 11 1 2.3675 -3.4789 -1.6150 12 6 0.2243 -3.5637 -1.6471 13 7 -0.8330 -3.6134 -0.8695 14 14 0.0765 -4.0125 -3.4543 15 1 0.8766 -5.2331 -3.7282 16 1 -1.3480 -4.2697 -3.7856 17 1 0.5834 -2.8914 -4.2858 18 6 0.8845 -2.8305 1.1301 19 8 0.7484 -4.0207 1.3440 20 6 0.3719 -1.8474 2.0942 21 6 -0.9848 -1.7529 2.3263 22 6 -1.4711 -0.8202 3.2464 23 6 -0.6027 -0.0004 3.9050 24 6 0.7792 -0.1062 3.6602 25 7 1.8329 0.5402 4.1461 26 6 2.9402 0.0694 3.5938 27 7 2.6376 -0.8857 2.7439 28 7 1.2428 -1.0245 2.7619 29 1 -0.3635 0.0039 1.0276 30 1 -0.3633 0.8880 -0.5172 31 1 -0.3633 -0.8919 -0.5105 32 1 1.6579 2.1308 0.0004 33 1 5.3586 0.0011 -0.0104 34 1 4.1352 -2.1335 -0.0020 35 1 -1.6753 -3.9460 -1.2169 36 1 -1.6698 -2.4014 1.8004 37 1 -2.5323 -0.7467 3.4333 38 1 -0.9736 0.7242 4.6148 39 1 3.9397 0.4168 3.8096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438215428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = 81.912592 kcal Electronic energy + Delta-G solvation = -31041.718555 eV Core-core repulsion = 26866.783470 eV Total energy + Delta-G solvation = -4174.935085 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.83449 -43.67518 -41.32149 -39.47954 -38.39984 -36.25388 -34.64745 -33.84919 -33.61276 -31.88796 -30.87212 -30.29107 -27.98615 -27.39112 -25.39122 -24.37902 -23.84835 -23.48611 -22.62488 -21.15620 -19.43063 -18.94935 -18.66075 -18.11860 -17.80764 -17.46177 -17.30492 -16.84963 -16.50630 -16.48986 -16.01143 -15.73767 -15.29494 -15.05103 -14.84879 -14.51876 -14.22989 -14.10729 -13.91075 -13.77380 -13.52146 -13.39728 -13.26946 -13.08541 -12.82425 -12.65244 -12.63241 -12.37381 -12.16937 -12.05420 -12.02612 -11.15900 -11.04553 -10.63769 -10.52006 -9.85065 -9.70695 -9.12914 -9.08296 -8.39532 -6.25838 -0.47090 0.03862 0.21638 0.31265 0.95145 1.39502 1.41789 1.50083 1.70922 1.98421 2.26132 2.43416 2.61229 2.74365 2.90484 3.09368 3.27945 3.37703 3.74248 3.80987 3.87876 3.93257 4.05435 4.17138 4.24042 4.43354 4.52059 4.59089 4.59947 4.77696 4.89757 4.97876 5.07898 5.12384 5.21745 5.28150 5.30813 5.36500 5.43470 5.47928 5.65999 5.74090 5.89450 6.14041 6.81521 6.91852 6.98166 7.31465 7.91112 8.65080 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010901 B = 0.006887 C = 0.005022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.931302 B = 4064.829038 C = 5573.827256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.148 4.148 4 C 0.084 3.916 5 F -0.143 7.143 6 C -0.134 4.134 7 C -0.081 4.081 8 C 0.147 3.853 9 N -0.425 5.425 10 C -0.369 4.369 11 H 0.074 0.926 12 C 0.024 3.976 13 N -0.856 5.856 14 Si 0.981 3.019 15 H -0.274 1.274 16 H -0.273 1.273 17 H -0.265 1.265 18 C 0.559 3.441 19 O -0.563 6.563 20 C 0.104 3.896 21 C -0.111 4.111 22 C -0.044 4.044 23 C -0.100 4.100 24 C 0.258 3.742 25 N -0.561 5.561 26 C 0.225 3.775 27 N -0.354 5.354 28 N -0.272 5.272 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.144 0.856 33 H 0.157 0.843 34 H 0.118 0.882 35 H 0.277 0.723 36 H 0.158 0.842 37 H 0.205 0.795 38 H 0.194 0.806 39 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.271 11.171 4.978 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.080 4.080 3 C -0.167 4.167 4 C 0.065 3.935 5 F -0.121 7.121 6 C -0.153 4.153 7 C -0.100 4.100 8 C 0.056 3.944 9 N -0.143 5.143 10 C -0.494 4.494 11 H 0.091 0.909 12 C -0.185 4.185 13 N -0.488 5.488 14 Si 0.804 3.196 15 H -0.199 1.199 16 H -0.198 1.198 17 H -0.190 1.190 18 C 0.348 3.652 19 O -0.442 6.442 20 C -0.009 4.009 21 C -0.134 4.134 22 C -0.069 4.069 23 C -0.122 4.122 24 C 0.006 3.994 25 N -0.292 5.292 26 C -0.075 4.075 27 N -0.185 5.185 28 N -0.049 5.049 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.161 0.839 33 H 0.175 0.825 34 H 0.136 0.864 35 H 0.087 0.913 36 H 0.175 0.825 37 H 0.222 0.778 38 H 0.211 0.789 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -0.836 10.475 4.931 11.608 hybrid contribution 0.109 -0.729 -1.007 1.248 sum -0.727 9.746 3.923 10.531 Atomic orbital electron populations 1.20989 0.90570 1.03358 1.02375 1.20025 0.96868 0.91659 0.99453 1.20875 0.92575 0.98413 1.04816 1.17529 0.89854 0.81159 1.04981 1.91454 1.80336 1.46048 1.94284 1.20966 1.01272 0.89752 1.03283 1.20972 0.92832 0.98080 0.98147 1.18114 0.91471 0.86084 0.98756 1.40473 1.48563 1.16604 1.08708 1.19135 0.93285 1.36122 1.00890 0.90862 1.26301 0.94512 0.95158 1.02494 1.69870 1.02378 1.40029 1.36541 0.85215 0.77700 0.78731 0.77980 1.19934 1.19769 1.18984 1.17677 0.80913 0.86483 0.80136 1.90625 1.59526 1.18688 1.75344 1.20849 0.90472 0.93031 0.96530 1.21595 0.90637 1.01079 1.00127 1.21640 1.03269 0.90726 0.91261 1.20896 0.85430 1.02795 1.03030 1.22515 0.97435 0.89049 0.90381 1.70784 0.96517 1.30590 1.31316 1.26657 1.00201 0.90617 0.90033 1.78739 0.86047 1.26005 1.27708 1.47815 1.06301 1.23650 1.27120 0.91247 0.90092 0.91965 0.83856 0.82489 0.86390 0.91331 0.82487 0.77840 0.78881 0.73594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.24 8.19 71.24 0.58 -3.66 16 2 C -0.08 -3.00 4.51 -19.73 -0.09 -3.09 16 3 C -0.15 -4.92 9.67 22.29 0.22 -4.71 16 4 C 0.08 2.69 7.30 22.41 0.16 2.85 16 5 F -0.14 -4.26 17.26 44.97 0.78 -3.48 16 6 C -0.13 -4.26 10.02 22.29 0.22 -4.04 16 7 C -0.08 -3.13 8.84 22.40 0.20 -2.93 16 8 C 0.15 6.35 3.05 38.24 0.12 6.46 16 9 N -0.43 -21.34 1.74 -462.85 -0.80 -22.15 16 10 C -0.37 -19.81 8.74 84.12 0.74 -19.07 16 11 H 0.07 3.96 7.93 -2.91 -0.02 3.93 16 12 C 0.02 1.23 5.42 84.96 0.46 1.69 16 13 N -0.86 -44.57 11.61 21.68 0.25 -44.31 16 14 Si 0.98 40.68 29.62 68.60 2.03 42.71 16 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 16 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 17 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 18 C 0.56 28.70 5.12 86.52 0.44 29.14 16 19 O -0.56 -33.85 16.49 -4.33 -0.07 -33.92 16 20 C 0.10 4.30 3.46 40.52 0.14 4.44 16 21 C -0.11 -3.69 8.18 22.57 0.18 -3.51 16 22 C -0.04 -0.95 9.60 22.20 0.21 -0.74 16 23 C -0.10 -2.30 10.07 22.45 0.23 -2.08 16 24 C 0.26 8.34 7.78 134.14 1.04 9.39 16 25 N -0.56 -18.17 11.24 -198.18 -2.23 -20.39 16 26 C 0.22 7.14 12.98 180.83 2.35 9.48 16 27 N -0.35 -13.48 9.68 -61.38 -0.59 -14.08 16 28 N -0.27 -10.40 2.75 -181.85 -0.50 -10.91 16 29 H 0.07 2.38 4.48 -2.39 -0.01 2.37 16 30 H 0.08 2.47 8.09 -2.39 -0.02 2.45 16 31 H 0.06 2.70 7.37 -2.39 -0.02 2.69 16 32 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 33 H 0.16 4.00 8.06 -2.91 -0.02 3.97 16 34 H 0.12 4.69 8.06 -2.91 -0.02 4.67 16 35 H 0.28 13.50 8.31 -92.71 -0.77 12.73 16 36 H 0.16 5.53 8.06 -2.91 -0.02 5.51 16 37 H 0.20 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.19 2.84 8.06 -2.91 -0.02 2.81 16 39 H 0.25 5.65 8.06 -2.91 -0.02 5.63 16 Total: -1.00 -71.76 337.26 7.18 -64.58 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 1.12 Total: 22.31 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 7.21 Total: 19.64 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -3.88 Total: -111.84 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.07 Total: -33.92 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.78 Total: -3.48 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Total: -71.76 7.18 -64.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438215428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.492 kcal (2) G-P(sol) polarization free energy of solvation -71.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds