Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35095 * 119.30188 * 2 1 4 4 N 1.36496 * 119.82209 * 180.02562 * 3 2 1 5 5 N 1.39704 * 134.40825 * 180.02562 * 4 3 2 6 6 N 1.28772 * 109.12467 * 179.97438 * 5 4 3 7 7 C 1.33847 * 110.37037 * 359.97438 * 6 5 4 8 8 C 1.46988 * 126.08777 * 179.97438 * 7 6 5 9 9 O 1.21662 * 120.00136 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99666 * 0.02562 * 8 7 6 11 11 C 1.39369 * 119.99736 * 175.15152 * 10 8 7 12 12 C 1.38631 * 119.58235 * 184.98167 * 11 10 8 13 13 C 1.40805 * 118.79450 * 179.77536 * 12 11 10 14 14 C 1.41541 * 120.99309 * 180.26189 * 13 12 11 15 15 H 1.08002 * 119.99416 * 203.81446 * 14 13 12 16 16 C 1.40026 * 120.00111 * 23.82397 * 14 13 12 17 17 N 1.30736 * 120.00325 * 16.95486 * 16 14 13 18 18 Si 1.86805 * 119.99765 * 196.95377 * 16 14 13 19 19 H 1.48502 * 109.46902 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47312 * 119.99745 * 18 16 14 21 21 H 1.48507 * 109.46898 * 239.99951 * 18 16 14 22 22 C 1.41186 * 118.00489 * 0.48609 * 13 12 11 23 23 C 1.37583 * 119.02185 * 359.75151 * 22 13 12 24 24 N 1.32084 * 121.11247 * 0.02562 * 23 22 13 25 25 C 1.36997 * 119.02475 * 0.02562 * 4 3 2 26 26 C 1.40888 * 119.20631 * 359.97438 * 25 4 3 27 27 O 1.35536 * 120.29101 * 180.02562 * 26 25 4 28 28 N 1.31831 * 119.42246 * 0.27520 * 26 25 4 29 29 H 1.08997 * 109.47185 * 89.99925 * 1 2 3 30 30 H 1.09006 * 109.46868 * 209.99852 * 1 2 3 31 31 H 1.08996 * 109.46848 * 329.99305 * 1 2 3 32 32 H 1.07999 * 120.09203 * 0.02562 * 3 2 1 33 33 H 0.96995 * 120.00401 * 355.15285 * 10 8 7 34 34 H 1.08005 * 120.60292 * 0.02562 * 12 11 10 35 35 H 0.97005 * 119.99987 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.48654 * 179.77472 * 22 13 12 37 37 H 1.08001 * 119.43996 * 180.02562 * 23 22 13 38 38 H 0.96698 * 113.99872 * 90.00144 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1682 1.1781 0.0000 4 7 3.5331 1.1905 -0.0005 5 7 4.5016 2.1973 -0.0002 6 7 5.6709 1.6579 -0.0005 7 6 5.5684 0.3234 -0.0004 8 6 6.6864 -0.6308 -0.0012 9 8 6.4651 -1.8272 -0.0015 10 7 7.9567 -0.1804 -0.0016 11 6 9.0154 -1.0812 0.0997 12 6 10.3127 -0.6036 0.2030 13 6 11.3693 -1.5282 0.3093 14 6 12.7110 -1.0919 0.4226 15 1 13.5181 -1.7445 0.1239 16 6 12.9920 0.1857 0.9222 17 7 12.0773 0.8443 1.5846 18 14 14.6738 0.9489 0.6423 19 1 15.5230 0.0061 -0.1292 20 1 14.5224 2.2153 -0.1182 21 1 15.3133 1.2317 1.9525 22 6 11.0507 -2.9036 0.2945 23 6 9.7327 -3.2822 0.1832 24 7 8.7697 -2.3830 0.0902 25 6 4.2086 -0.0013 -0.0016 26 6 3.4778 -1.2058 -0.0016 27 8 4.1237 -2.3974 -0.0021 28 7 2.1602 -1.1638 -0.0060 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6183 2.1076 0.0004 33 1 8.1341 0.7705 -0.0723 34 1 10.5091 0.4584 0.2060 35 1 12.2718 1.7295 1.9303 36 1 11.8301 -3.6474 0.3699 37 1 9.4813 -4.3325 0.1717 38 1 4.3114 -2.7433 0.8812 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001445586114.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = 86.302534 kcal Electronic energy + Delta-G solvation = -28075.492504 eV Core-core repulsion = 23920.667742 eV Total energy + Delta-G solvation = -4154.824762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.30219 -41.25548 -40.71723 -39.51036 -38.55344 -36.15291 -35.61000 -35.17004 -33.53646 -32.50019 -31.98366 -30.38217 -28.57330 -27.90675 -26.41025 -25.12937 -24.23653 -23.83532 -23.08180 -21.58925 -20.29516 -19.99133 -19.50059 -18.76853 -18.56044 -18.01197 -17.34841 -16.99391 -16.44884 -16.20670 -16.07601 -16.03594 -15.68093 -15.36669 -15.02076 -14.68508 -14.44513 -14.35155 -14.14038 -13.90238 -13.39604 -13.28874 -13.17866 -12.96432 -12.91907 -12.74709 -12.65620 -12.54369 -12.08034 -11.90739 -11.53100 -11.30282 -11.25514 -11.24762 -11.15084 -9.94931 -9.64480 -9.41375 -8.86832 -8.64641 -6.55496 -1.09217 -0.84833 0.30382 0.45298 0.91799 1.00372 1.41126 1.55223 1.57209 1.71499 1.86798 2.00792 2.19401 2.21003 2.58164 2.81391 2.82072 2.97194 3.19710 3.73550 3.76059 3.86511 3.92226 4.11928 4.33464 4.53847 4.76646 4.79896 4.81357 4.83587 4.93553 4.96911 5.07663 5.22441 5.31365 5.49043 5.61019 5.90270 6.07297 6.12285 6.35264 6.42281 6.51577 6.55058 6.79935 6.83420 7.13160 7.79828 8.26102 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.002662 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.569952 B =10514.169587 C =11687.727663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.119 3.881 3 C 0.036 3.964 4 N -0.235 5.235 5 N -0.096 5.096 6 N -0.195 5.195 7 C -0.067 4.067 8 C 0.585 3.415 9 O -0.476 6.476 10 N -0.641 5.641 11 C 0.337 3.663 12 C -0.261 4.261 13 C 0.115 3.885 14 C -0.482 4.482 15 H 0.086 0.914 16 C 0.038 3.962 17 N -0.811 5.811 18 Si 0.987 3.013 19 H -0.256 1.256 20 H -0.264 1.264 21 H -0.265 1.265 22 C -0.297 4.297 23 C 0.118 3.882 24 N -0.572 5.572 25 C 0.022 3.978 26 C 0.393 3.607 27 O -0.446 6.446 28 N -0.466 5.466 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.120 0.880 32 H 0.240 0.760 33 H 0.420 0.580 34 H 0.120 0.880 35 H 0.292 0.708 36 H 0.118 0.882 37 H 0.156 0.844 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.101 4.118 -0.639 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.008 4.008 3 C -0.094 4.094 4 N -0.007 5.007 5 N -0.072 5.072 6 N -0.058 5.058 7 C -0.220 4.220 8 C 0.368 3.632 9 O -0.345 6.345 10 N -0.287 5.287 11 C 0.112 3.888 12 C -0.287 4.287 13 C 0.107 3.893 14 C -0.513 4.513 15 H 0.104 0.896 16 C -0.179 4.179 17 N -0.437 5.437 18 Si 0.807 3.193 19 H -0.179 1.179 20 H -0.189 1.189 21 H -0.190 1.190 22 C -0.321 4.321 23 C -0.036 4.036 24 N -0.292 5.292 25 C -0.109 4.109 26 C 0.193 3.807 27 O -0.255 6.255 28 N -0.192 5.192 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.139 0.861 32 H 0.256 0.744 33 H 0.258 0.742 34 H 0.137 0.863 35 H 0.103 0.897 36 H 0.136 0.864 37 H 0.173 0.827 38 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -23.404 4.176 -1.149 23.801 hybrid contribution 2.381 0.765 0.518 2.554 sum -21.023 4.942 -0.632 21.605 Atomic orbital electron populations 1.20963 0.81738 1.06538 1.05769 1.21710 1.00293 0.84271 0.94499 1.23500 0.77107 1.04844 1.03916 1.48221 1.08614 1.05794 1.38077 1.82176 0.88083 1.06403 1.30558 1.74140 1.16734 1.07069 1.07839 1.21229 0.92071 0.90129 1.18527 1.16857 0.81369 0.87061 0.77910 1.90891 1.83367 1.14443 1.45772 1.43131 1.03946 1.10316 1.71305 1.18273 0.85683 0.88299 0.96541 1.21514 0.90512 1.00815 1.15844 1.17993 0.93875 0.91342 0.86140 1.19896 0.92587 1.00375 1.38403 0.89577 1.26854 1.03298 0.96543 0.91234 1.69826 1.37131 1.12931 1.23768 0.85087 0.76508 0.78515 0.79198 1.17922 1.18867 1.18992 1.22089 0.97240 0.96111 1.16634 1.22263 0.88398 0.98140 0.94767 1.67330 1.36678 1.00079 1.25082 1.20959 0.93063 0.89948 1.06897 1.18722 0.85968 0.84243 0.91753 1.84815 1.74672 1.30422 1.35542 1.68064 1.06968 1.31103 1.13094 0.87649 0.89077 0.86123 0.74372 0.74242 0.86269 0.89724 0.86411 0.82657 0.70908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.23 10.14 71.24 0.72 0.50 16 2 C 0.12 1.47 6.71 41.59 0.28 1.75 16 3 C 0.04 0.45 10.83 83.24 0.90 1.36 16 4 N -0.24 -5.60 3.98 -187.06 -0.74 -6.35 16 5 N -0.10 -2.79 13.83 37.02 0.51 -2.28 16 6 N -0.19 -6.61 11.97 -48.75 -0.58 -7.19 16 7 C -0.07 -2.36 7.08 41.51 0.29 -2.07 16 8 C 0.58 24.21 7.76 86.54 0.67 24.88 16 9 O -0.48 -21.16 12.26 17.84 0.22 -20.94 16 10 N -0.64 -28.09 5.38 -311.99 -1.68 -29.77 16 11 C 0.34 17.11 7.41 132.79 0.98 18.09 16 12 C -0.26 -13.95 8.62 22.99 0.20 -13.75 16 13 C 0.11 6.22 5.60 -21.11 -0.12 6.10 16 14 C -0.48 -25.28 9.12 23.52 0.21 -25.06 16 15 H 0.09 4.30 7.90 -2.91 -0.02 4.28 16 16 C 0.04 1.86 5.20 85.29 0.44 2.30 16 17 N -0.81 -41.06 10.93 21.84 0.24 -40.82 16 18 Si 0.99 36.77 29.59 68.60 2.03 38.80 16 19 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 20 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 21 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 22 C -0.30 -14.70 9.90 22.84 0.23 -14.48 16 23 C 0.12 5.61 11.15 84.50 0.94 6.55 16 24 N -0.57 -29.22 7.84 -193.58 -1.52 -30.74 16 25 C 0.02 0.65 6.81 39.36 0.27 0.91 16 26 C 0.39 10.24 7.85 85.34 0.67 10.91 16 27 O -0.45 -12.57 10.81 -66.34 -0.72 -13.29 16 28 N -0.47 -9.47 10.38 -297.26 -3.08 -12.56 16 29 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 30 H 0.09 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.12 -0.46 8.06 -2.39 -0.02 -0.48 16 32 H 0.24 0.59 8.06 -2.91 -0.02 0.57 16 33 H 0.42 16.83 8.39 -92.71 -0.78 16.05 16 34 H 0.12 6.44 6.20 -2.91 -0.02 6.42 16 35 H 0.29 13.24 8.29 -92.70 -0.77 12.47 16 36 H 0.12 5.29 8.06 -2.91 -0.02 5.26 16 37 H 0.16 6.21 8.06 -2.91 -0.02 6.19 16 38 H 0.43 9.17 8.91 -74.06 -0.66 8.51 16 Total: -1.00 -74.84 340.70 1.11 -73.73 By element: Atomic # 1 Polarization: 33.68 SS G_CDS: -0.26 Total: 33.42 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 6.70 Total: 17.99 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -6.86 Total: -129.71 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.50 Total: -34.23 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Total: -74.84 1.11 -73.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001445586114.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.035 kcal (2) G-P(sol) polarization free energy of solvation -74.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds