Wall clock time and date at job start Sat Apr 11 2020 05:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99922 * 2 1 4 4 H 1.48498 * 109.47078 * 270.00107 * 3 2 1 5 5 H 1.48501 * 109.47187 * 29.99891 * 3 2 1 6 6 H 1.48498 * 109.47190 * 149.99892 * 3 2 1 7 7 C 1.38814 * 120.00240 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00060 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99817 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99920 * 180.02562 * 9 7 2 11 11 H 1.08994 * 112.85343 * 23.79905 * 10 9 7 12 12 C 1.53788 * 113.61505 * 154.99966 * 10 9 7 13 13 C 1.53777 * 87.08235 * 139.98031 * 12 10 9 14 14 H 1.08997 * 113.61859 * 89.19449 * 13 12 10 15 15 C 1.52997 * 113.61546 * 220.01968 * 13 12 10 16 16 N 1.46499 * 109.47555 * 185.00031 * 15 13 12 17 17 C 1.34777 * 120.00199 * 180.02562 * 16 15 13 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 15 20 20 C 1.50700 * 109.46869 * 179.72354 * 19 17 16 21 21 C 1.38264 * 119.96824 * 269.72252 * 20 19 17 22 22 C 1.38194 * 120.04804 * 179.72692 * 21 20 19 23 23 C 1.38446 * 119.98801 * 0.52958 * 22 21 20 24 24 F 1.35097 * 120.03126 * 179.72765 * 23 22 21 25 25 C 1.38548 * 119.93609 * 359.74545 * 23 22 21 26 26 Cl 1.73599 * 120.02102 * 180.02562 * 25 23 22 27 27 C 1.38214 * 119.97033 * 90.00239 * 20 19 17 28 28 C 1.53788 * 87.08240 * 334.56436 * 13 12 10 29 29 H 0.97006 * 120.00322 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00350 * 359.97438 * 9 7 2 31 31 H 1.08998 * 113.61563 * 25.42610 * 12 10 9 32 32 H 1.09004 * 113.68327 * 254.53834 * 12 10 9 33 33 H 1.08998 * 109.47382 * 64.99592 * 15 13 12 34 34 H 1.09002 * 109.47216 * 305.00029 * 15 13 12 35 35 H 0.97000 * 119.99484 * 359.97438 * 16 15 13 36 36 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 37 37 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 38 38 H 1.08003 * 119.97208 * 0.02562 * 21 20 19 39 39 H 1.07997 * 120.00195 * 180.24876 * 22 21 20 40 40 H 1.07996 * 119.99239 * 359.97438 * 27 20 19 41 41 H 1.09001 * 113.61186 * 139.97827 * 28 13 12 42 42 H 1.08995 * 113.61392 * 270.88823 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0017 11 1 3.0653 -3.5636 0.4077 12 6 1.2598 -4.8285 0.5971 13 6 1.8484 -5.6978 -0.5265 14 1 2.7981 -6.1647 -0.2655 15 6 0.8458 -6.6857 -1.1263 16 7 1.5277 -7.5441 -2.0981 17 6 0.8379 -8.4962 -2.7571 18 8 -0.3473 -8.6425 -2.5452 19 6 1.5406 -9.3833 -3.7521 20 6 0.5540 -10.3595 -4.3393 21 6 0.3581 -11.5892 -3.7383 22 6 -0.5504 -12.4834 -4.2721 23 6 -1.2569 -12.1523 -5.4157 24 9 -2.1411 -13.0280 -5.9414 25 6 -1.0559 -10.9222 -6.0208 26 17 -1.9411 -10.5046 -7.4545 27 6 -0.1498 -10.0271 -5.4814 28 6 2.0001 -4.4027 -1.3419 29 1 -0.4851 0.8401 0.0004 30 1 0.3556 -2.3881 0.0005 31 1 0.1795 -4.7000 0.5294 32 1 1.5895 -5.1213 1.5939 33 1 0.0475 -6.1357 -1.6246 34 1 0.4224 -7.3008 -0.3323 35 1 2.4755 -7.4268 -2.2678 36 1 1.9643 -8.7715 -4.5486 37 1 2.3388 -9.9306 -3.2507 38 1 0.9119 -11.8491 -2.8482 39 1 -0.7058 -13.4421 -3.7997 40 1 0.0071 -9.0679 -5.9523 41 1 2.9286 -4.3510 -1.9105 42 1 1.1222 -4.1578 -1.9397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479322999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:31 Heat of formation + Delta-G solvation = -39.760626 kcal Electronic energy + Delta-G solvation = -25302.641143 eV Core-core repulsion = 21223.537405 eV Total energy + Delta-G solvation = -4079.103738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.31549 -40.39059 -39.25798 -38.39104 -36.92181 -34.74858 -33.36881 -32.97997 -31.40009 -30.34809 -28.55061 -26.61237 -25.12890 -23.89688 -23.63872 -22.44000 -21.09714 -20.60351 -19.10051 -18.21534 -17.29546 -17.18100 -17.00515 -16.71905 -16.10001 -15.84810 -15.51767 -14.93001 -14.78635 -14.51081 -14.36667 -14.00463 -13.92876 -13.56813 -13.44796 -13.21214 -12.99914 -12.52738 -12.37031 -11.93414 -11.85480 -11.82523 -11.75606 -11.43191 -11.31135 -11.26558 -10.86014 -10.57039 -10.31880 -10.17387 -9.96484 -9.86677 -9.53854 -9.40629 -9.10493 -8.98500 -8.89466 -6.99232 -5.80747 -3.09824 0.51384 0.64347 1.62247 2.47071 2.81517 3.24815 3.40752 3.45795 3.47762 3.66894 4.06647 4.17776 4.55811 4.56274 4.62801 4.64198 4.83444 4.92182 4.97372 5.01544 5.18825 5.20755 5.39163 5.43635 5.45540 5.46443 5.61280 5.77630 5.80568 5.89090 5.90674 6.05971 6.19902 6.23328 6.27107 6.31841 6.39584 6.55077 6.78547 7.07490 7.36105 7.66351 8.07567 8.37665 9.48732 10.06947 10.40953 11.41537 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.020155 B = 0.001699 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.895379 B =16478.675674 C =17311.116676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.143 4.143 13 C -0.127 4.127 14 H 0.088 0.912 15 C 0.132 3.868 16 N -0.724 5.724 17 C 0.509 3.491 18 O -0.534 6.534 19 C -0.104 4.104 20 C -0.061 4.061 21 C -0.072 4.072 22 C -0.140 4.140 23 C 0.107 3.893 24 F -0.128 7.128 25 C -0.071 4.071 26 Cl -0.050 7.050 27 C -0.068 4.068 28 C -0.161 4.161 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.401 0.599 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.053 0.947 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.272 -27.633 -10.168 29.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.053 3.947 11 H 0.093 0.907 12 C -0.183 4.183 13 C -0.146 4.146 14 H 0.106 0.894 15 C 0.009 3.991 16 N -0.376 5.376 17 C 0.294 3.706 18 O -0.410 6.410 19 C -0.143 4.143 20 C -0.062 4.062 21 C -0.090 4.090 22 C -0.159 4.159 23 C 0.087 3.913 24 F -0.107 7.107 25 C -0.099 4.099 26 Cl -0.021 7.021 27 C -0.086 4.086 28 C -0.202 4.202 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.235 0.765 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.161 0.839 41 H 0.072 0.928 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.391 -27.524 -10.126 29.523 hybrid contribution 0.291 0.892 -0.366 1.007 sum 3.682 -26.632 -10.493 28.860 Atomic orbital electron populations 1.69659 1.05144 1.25783 1.57364 1.24781 0.95534 0.97826 1.02815 0.86187 0.78646 0.83797 0.77522 1.21697 1.21751 1.20738 1.19295 0.91058 0.84242 1.43025 0.91094 1.42414 1.05772 0.99888 1.86988 1.21519 0.95309 0.85059 0.92764 0.90675 1.23455 1.01064 0.97043 0.96703 1.22639 0.98348 0.94397 0.99236 0.89373 1.21452 0.95321 0.91544 0.90817 1.46055 1.13282 1.35360 1.42899 1.20421 0.87566 0.80923 0.81659 1.90760 1.15342 1.69862 1.65031 1.20695 0.97644 0.96828 0.99179 1.19276 0.97711 0.94643 0.94604 1.20968 0.96671 0.92442 0.98891 1.21089 0.97674 1.01913 0.95209 1.17421 0.92085 0.87189 0.94646 1.91539 1.65879 1.67482 1.85769 1.20929 1.00340 0.95226 0.93389 1.98397 1.74360 1.93244 1.36103 1.20829 0.93740 0.98690 0.95384 1.23953 1.01332 0.94939 0.99970 0.93421 0.78062 0.90123 0.92007 0.91199 0.91762 0.76522 0.87332 0.87306 0.84345 0.83677 0.83944 0.92777 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.95 13.06 55.49 0.72 -27.22 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.68 9.97 -15.06 -0.15 -6.83 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -17.46 5.40 -52.63 -0.28 -17.74 16 10 C 0.17 3.08 4.48 -67.11 -0.30 2.78 16 11 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 12 C -0.14 -2.17 7.39 -25.92 -0.19 -2.36 16 13 C -0.13 -1.55 3.75 -89.81 -0.34 -1.89 16 14 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 15 C 0.13 1.57 5.51 -4.04 -0.02 1.55 16 16 N -0.72 -6.72 5.56 -60.29 -0.33 -7.06 16 17 C 0.51 5.20 7.82 -10.98 -0.09 5.11 16 18 O -0.53 -7.96 16.03 5.55 0.09 -7.87 16 19 C -0.10 -0.62 5.83 -29.03 -0.17 -0.79 16 20 C -0.06 -0.48 4.37 -104.62 -0.46 -0.94 16 21 C -0.07 -0.51 9.70 -39.59 -0.38 -0.90 16 22 C -0.14 -1.07 10.03 -39.52 -0.40 -1.47 16 23 C 0.11 1.03 7.28 -39.39 -0.29 0.74 16 24 F -0.13 -1.33 16.84 2.25 0.04 -1.29 16 25 C -0.07 -0.70 6.33 -39.44 -0.25 -0.95 16 26 Cl -0.05 -0.49 28.62 -51.86 -1.48 -1.98 16 27 C -0.07 -0.60 9.48 -39.56 -0.38 -0.97 16 28 C -0.16 -2.50 7.43 -25.91 -0.19 -2.69 16 29 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.39 10.10 7.92 -40.82 -0.32 9.78 16 31 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.40 2.57 8.47 -40.82 -0.35 2.23 16 36 H 0.11 0.44 8.09 -51.93 -0.42 0.02 16 37 H 0.11 0.35 8.08 -51.93 -0.42 -0.07 16 38 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 39 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 1.37 7.90 -51.93 -0.41 0.96 16 LS Contribution 378.61 15.07 5.71 5.71 Total: -1.00 -33.34 378.61 -9.94 -43.28 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.67 Total: 7.20 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -3.69 Total: -10.08 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.11 Total: -52.02 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.87 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.34 -9.94 -43.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479322999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.519 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds