Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99785 * 2 1 4 4 H 1.48508 * 109.47114 * 239.99989 * 3 2 1 5 5 H 1.48500 * 109.47423 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47147 * 120.00297 * 3 2 1 7 7 C 1.38798 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00112 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00015 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00122 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47397 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99492 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00204 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99952 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47119 * 173.70529 * 14 13 11 16 16 H 1.08999 * 109.90451 * 58.27357 * 15 14 13 17 17 C 1.53993 * 109.91742 * 179.37384 * 15 14 13 18 18 C 1.54596 * 105.14050 * 120.57828 * 17 15 14 19 19 C 1.54933 * 102.92007 * 21.95612 * 18 17 15 20 20 N 1.47898 * 109.91617 * 296.96162 * 15 14 13 21 21 C 1.46904 * 110.99757 * 94.80442 * 20 15 14 22 22 C 1.50703 * 109.47157 * 173.65484 * 21 20 15 23 23 C 1.38418 * 122.54101 * 89.99956 * 22 21 20 24 24 C 1.33383 * 114.92572 * 179.97438 * 23 22 21 25 25 S 1.75885 * 109.58953 * 0.02562 * 24 23 22 26 26 C 1.33392 * 122.53518 * 269.71187 * 22 21 20 27 27 H 0.97000 * 120.00287 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47467 * 300.00152 * 10 9 7 29 29 H 1.09001 * 109.47212 * 60.00129 * 10 9 7 30 30 H 0.96996 * 120.00196 * 0.02562 * 13 11 10 31 31 H 1.09002 * 109.46993 * 293.70437 * 14 13 11 32 32 H 1.08998 * 109.46970 * 53.70210 * 14 13 11 33 33 H 1.09001 * 110.31054 * 239.49405 * 17 15 14 34 34 H 1.09002 * 110.30934 * 1.66109 * 17 15 14 35 35 H 1.08996 * 110.71979 * 140.31492 * 18 17 15 36 36 H 1.08998 * 110.72131 * 263.41555 * 18 17 15 37 37 H 1.09006 * 110.66765 * 81.02395 * 19 18 17 38 38 H 1.08999 * 110.66784 * 203.98081 * 19 18 17 39 39 H 1.09002 * 109.47055 * 293.65235 * 21 20 15 40 40 H 1.09008 * 109.47274 * 53.65519 * 21 20 15 41 41 H 1.08002 * 122.54105 * 359.95330 * 23 22 21 42 42 H 1.08003 * 125.20860 * 179.97438 * 24 23 22 43 43 H 1.07992 * 125.20763 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8443 -6.3430 -0.0018 14 6 2.3306 -7.7150 -0.0019 15 6 3.4945 -8.6954 -0.1608 16 1 4.2121 -8.5536 0.6473 17 6 2.9674 -10.1422 -0.1464 18 6 3.3960 -10.7416 -1.5055 19 6 4.5790 -9.8341 -1.9267 20 7 4.1539 -8.4869 -1.4681 21 6 5.3076 -7.5867 -1.3381 22 6 6.0440 -7.5211 -2.6513 23 6 5.7423 -6.5883 -3.6284 24 6 6.4896 -6.6668 -4.7305 25 16 7.6492 -7.9788 -4.5644 26 6 7.0398 -8.3541 -2.9577 27 1 -0.4850 0.8400 0.0004 28 1 3.1246 -3.7313 -0.8905 29 1 3.1246 -3.7313 0.8895 30 1 3.8011 -6.1834 -0.0015 31 1 1.8168 -7.9106 0.9393 32 1 1.6331 -7.8418 -0.8298 33 1 3.4191 -10.7013 0.6730 34 1 1.8811 -10.1482 -0.0560 35 1 3.7253 -11.7736 -1.3851 36 1 2.5824 -10.6797 -2.2281 37 1 5.4965 -10.1400 -1.4238 38 1 4.7108 -9.8513 -3.0085 39 1 4.9616 -6.5897 -1.0654 40 1 5.9770 -7.9633 -0.5645 41 1 4.9608 -5.8527 -3.5078 42 1 6.3963 -6.0238 -5.5932 43 1 7.4131 -9.1402 -2.3183 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481024798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = 5.784485 kcal Electronic energy + Delta-G solvation = -24491.109674 eV Core-core repulsion = 20982.237802 eV Total energy + Delta-G solvation = -3508.871872 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.21196 -38.82052 -37.83718 -34.34306 -32.77431 -32.40320 -30.69437 -29.58690 -28.66817 -26.67706 -25.49882 -24.58386 -22.93135 -21.53560 -20.82345 -19.96964 -18.98408 -17.86275 -17.69818 -16.73924 -16.37623 -15.98048 -15.53517 -15.27191 -14.88364 -14.77740 -14.47947 -13.86728 -13.82030 -13.43124 -13.27908 -13.17771 -13.02700 -12.69894 -12.58368 -12.56108 -12.29969 -11.79064 -11.67541 -11.61017 -11.53257 -11.32274 -11.02039 -11.01910 -10.91265 -10.86285 -10.73939 -9.79589 -9.32680 -9.07105 -9.03740 -8.79787 -8.75692 -8.56648 -8.20019 -6.46434 -6.18897 -3.89073 0.75446 1.42011 1.73861 2.43175 3.08654 3.19250 3.25094 3.29304 3.33872 3.70126 3.76988 4.23148 4.28569 4.37447 4.55646 4.63316 4.70815 4.84609 4.95087 5.02167 5.15988 5.16421 5.17777 5.22562 5.28874 5.40186 5.47676 5.52239 5.53648 5.66364 5.72816 5.75805 5.80776 5.88128 5.93556 6.03492 6.14354 6.17392 6.25123 6.54474 6.70207 6.74398 7.61676 7.77574 8.37561 8.70160 9.26191 10.88471 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010944 B = 0.002818 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.969985 B = 9933.225277 C =12115.181419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.735 5.735 14 C 0.138 3.862 15 C 0.054 3.946 16 H 0.059 0.941 17 C -0.123 4.123 18 C -0.124 4.124 19 C 0.039 3.961 20 N -0.501 5.501 21 C 0.101 3.899 22 C -0.090 4.090 23 C -0.115 4.115 24 C -0.210 4.210 25 S 0.085 5.915 26 C -0.211 4.211 27 H 0.269 0.731 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.392 0.608 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.145 0.855 42 H 0.165 0.835 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.155 -22.950 -4.967 28.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.391 5.391 14 C 0.013 3.987 15 C -0.055 4.055 16 H 0.077 0.923 17 C -0.162 4.162 18 C -0.162 4.162 19 C -0.089 4.089 20 N -0.225 5.225 21 C -0.029 4.029 22 C -0.103 4.103 23 C -0.145 4.145 24 C -0.345 4.345 25 S 0.349 5.651 26 C -0.347 4.347 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.228 0.772 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.163 0.837 42 H 0.182 0.818 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 14.768 -23.514 -6.278 28.468 hybrid contribution 2.019 1.654 1.411 2.967 sum 16.788 -21.860 -4.868 27.989 Atomic orbital electron populations 1.70008 1.05941 1.27523 1.46838 1.24981 0.95013 0.98978 0.94574 0.86241 0.79246 0.81309 0.78787 1.19947 1.20827 1.19957 1.22834 0.94870 0.91754 1.58969 0.91029 1.85393 1.04936 0.96187 1.96694 1.23530 1.06517 0.95641 1.04722 1.20263 0.86555 0.86237 0.75220 1.90698 1.15356 1.85611 1.47622 1.46127 1.09642 1.05651 1.77721 1.21343 0.95198 0.80167 1.01988 1.22686 0.96373 0.95561 0.90894 0.92273 1.22368 1.02304 0.93572 0.97919 1.22484 0.98377 0.98357 0.96959 1.23220 0.96362 0.88146 1.01172 1.64802 1.23905 1.09716 1.24117 1.21080 0.90659 0.98512 0.92643 1.18732 0.97131 0.96863 0.97582 1.20152 1.01076 1.00501 0.92784 1.25617 1.01717 1.03592 1.03564 1.84247 1.37645 1.30036 1.13214 1.25452 1.03199 1.05781 1.00264 0.92153 0.89369 0.89438 0.77199 0.91649 0.90480 0.91088 0.90158 0.91060 0.90465 0.93935 0.89924 0.89421 0.93587 0.83716 0.81775 0.82322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.52 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 11 C 0.53 10.13 7.85 -10.98 -0.09 10.04 16 12 O -0.52 -12.02 15.85 5.55 0.09 -11.94 16 13 N -0.74 -10.14 5.31 -60.29 -0.32 -10.46 16 14 C 0.14 1.66 5.12 -4.04 -0.02 1.63 16 15 C 0.05 0.47 2.70 -66.65 -0.18 0.29 16 16 H 0.06 0.48 7.64 -51.93 -0.40 0.08 16 17 C -0.12 -0.89 6.57 -25.37 -0.17 -1.05 16 18 C -0.12 -0.86 7.06 -24.87 -0.18 -1.03 16 19 C 0.04 0.30 5.07 -1.90 -0.01 0.29 16 20 N -0.50 -4.62 4.94 -224.00 -1.11 -5.73 16 21 C 0.10 0.89 4.84 -4.97 -0.02 0.87 16 22 C -0.09 -0.83 4.61 -106.25 -0.49 -1.32 16 23 C -0.12 -1.16 9.98 -41.21 -0.41 -1.57 16 24 C -0.21 -1.90 11.23 29.04 0.33 -1.58 16 25 S 0.09 0.69 23.34 -107.50 -2.51 -1.82 16 26 C -0.21 -1.70 9.74 29.04 0.28 -1.42 16 27 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.39 4.44 5.61 -40.82 -0.23 4.21 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.59 7.69 -51.93 -0.40 0.20 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.04 0.29 7.70 -51.93 -0.40 -0.11 16 38 H 0.08 0.71 7.73 -51.93 -0.40 0.31 16 39 H 0.09 0.82 5.50 -51.93 -0.29 0.53 16 40 H 0.05 0.35 7.90 -51.92 -0.41 -0.06 16 41 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 42 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 43 H 0.16 1.01 7.86 -52.49 -0.41 0.59 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -34.31 376.84 -11.49 -45.80 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.28 Total: 2.24 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -0.53 Total: -10.83 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: -0.69 Total: -41.81 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -0.92 SS G_CDS: -4.72 Total: -5.64 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.31 -11.49 -45.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481024798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.584 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds