Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99785 * 2 1 4 4 H 1.48508 * 109.47114 * 239.99989 * 3 2 1 5 5 H 1.48500 * 109.47423 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47147 * 120.00297 * 3 2 1 7 7 C 1.38798 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00112 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00015 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00122 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47397 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99492 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00204 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99952 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47119 * 173.70529 * 14 13 11 16 16 H 1.08999 * 109.90451 * 58.27357 * 15 14 13 17 17 C 1.53993 * 109.91742 * 179.37384 * 15 14 13 18 18 C 1.54596 * 105.14050 * 120.57828 * 17 15 14 19 19 C 1.54933 * 102.92007 * 21.95612 * 18 17 15 20 20 N 1.47898 * 109.91617 * 296.96162 * 15 14 13 21 21 C 1.46904 * 110.99757 * 94.80442 * 20 15 14 22 22 C 1.50703 * 109.47157 * 173.65484 * 21 20 15 23 23 C 1.38418 * 122.54101 * 89.99956 * 22 21 20 24 24 C 1.33383 * 114.92572 * 179.97438 * 23 22 21 25 25 S 1.75885 * 109.58953 * 0.02562 * 24 23 22 26 26 C 1.33392 * 122.53518 * 269.71187 * 22 21 20 27 27 H 0.97000 * 120.00287 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47467 * 300.00152 * 10 9 7 29 29 H 1.09001 * 109.47212 * 60.00129 * 10 9 7 30 30 H 0.96996 * 120.00196 * 0.02562 * 13 11 10 31 31 H 1.09002 * 109.46993 * 293.70437 * 14 13 11 32 32 H 1.08998 * 109.46970 * 53.70210 * 14 13 11 33 33 H 1.09001 * 110.31054 * 239.49405 * 17 15 14 34 34 H 1.09002 * 110.30934 * 1.66109 * 17 15 14 35 35 H 1.08996 * 110.71979 * 140.31492 * 18 17 15 36 36 H 1.08998 * 110.72131 * 263.41555 * 18 17 15 37 37 H 1.09006 * 110.66765 * 81.02395 * 19 18 17 38 38 H 1.08999 * 110.66784 * 203.98081 * 19 18 17 39 39 H 1.09002 * 109.47055 * 293.65235 * 21 20 15 40 40 H 1.09008 * 109.47274 * 53.65519 * 21 20 15 41 41 H 1.08002 * 122.54105 * 359.95330 * 23 22 21 42 42 H 1.08003 * 125.20860 * 179.97438 * 24 23 22 43 43 H 1.07992 * 125.20763 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0021 13 7 2.8443 -6.3430 -0.0018 14 6 2.3306 -7.7150 -0.0019 15 6 3.4945 -8.6954 -0.1608 16 1 4.2121 -8.5536 0.6473 17 6 2.9674 -10.1422 -0.1464 18 6 3.3960 -10.7416 -1.5055 19 6 4.5790 -9.8341 -1.9267 20 7 4.1539 -8.4869 -1.4681 21 6 5.3076 -7.5867 -1.3381 22 6 6.0440 -7.5211 -2.6513 23 6 5.7423 -6.5883 -3.6284 24 6 6.4896 -6.6668 -4.7305 25 16 7.6492 -7.9788 -4.5644 26 6 7.0398 -8.3541 -2.9577 27 1 -0.4850 0.8400 0.0004 28 1 3.1246 -3.7313 -0.8905 29 1 3.1246 -3.7313 0.8895 30 1 3.8011 -6.1834 -0.0015 31 1 1.8168 -7.9106 0.9393 32 1 1.6331 -7.8418 -0.8298 33 1 3.4191 -10.7013 0.6730 34 1 1.8811 -10.1482 -0.0560 35 1 3.7253 -11.7736 -1.3851 36 1 2.5824 -10.6797 -2.2281 37 1 5.4965 -10.1400 -1.4238 38 1 4.7108 -9.8513 -3.0085 39 1 4.9616 -6.5897 -1.0654 40 1 5.9770 -7.9633 -0.5645 41 1 4.9608 -5.8527 -3.5078 42 1 6.3963 -6.0238 -5.5932 43 1 7.4131 -9.1402 -2.3183 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481024798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = -17.393871 kcal Electronic energy + Delta-G solvation = -24492.114763 eV Core-core repulsion = 20982.237802 eV Total energy + Delta-G solvation = -3509.876961 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08637 -40.10274 -38.56038 -35.61203 -34.57912 -33.41940 -31.89731 -30.33101 -29.84833 -27.68596 -27.31829 -25.54388 -23.63751 -22.24946 -21.79404 -21.09981 -19.78107 -19.65661 -18.40402 -17.80675 -17.62487 -17.04685 -16.87425 -16.53833 -16.27965 -15.94806 -15.52316 -15.49820 -14.68495 -14.49533 -14.37053 -14.12969 -13.95698 -13.87954 -13.58640 -13.37570 -13.16663 -13.11302 -12.95757 -12.85864 -12.65059 -12.40008 -12.33490 -12.19428 -11.96524 -11.73762 -11.57578 -11.44866 -11.12494 -10.91551 -10.27320 -10.06307 -9.73696 -9.43723 -9.21503 -8.65988 -8.33853 -6.12019 0.09278 0.78273 1.07594 1.27377 1.44020 1.47095 1.57054 1.64656 1.72582 2.27050 2.32638 3.00013 3.04063 3.32407 3.63254 3.72132 3.83381 4.01105 4.05401 4.09149 4.24041 4.28162 4.31614 4.39351 4.49383 4.51816 4.58233 4.61385 4.65531 4.79777 4.80930 4.92684 4.99572 5.07838 5.12087 5.22906 5.32030 5.41859 5.45397 5.48363 5.56422 5.94578 6.05799 6.20120 6.49624 7.07100 7.26274 8.75184 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.010944 B = 0.002818 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.969985 B = 9933.225277 C =12115.181419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.129 4.129 11 C 0.532 3.468 12 O -0.567 6.567 13 N -0.709 5.709 14 C 0.137 3.863 15 C 0.062 3.938 16 H 0.077 0.923 17 C -0.120 4.120 18 C -0.121 4.121 19 C 0.042 3.958 20 N -0.521 5.521 21 C 0.103 3.897 22 C -0.103 4.103 23 C -0.135 4.135 24 C -0.221 4.221 25 S 0.105 5.895 26 C -0.205 4.205 27 H 0.271 0.729 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.408 0.592 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.131 0.869 42 H 0.173 0.827 43 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.298 -24.135 -4.548 31.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.364 5.364 14 C 0.013 3.987 15 C -0.047 4.047 16 H 0.095 0.905 17 C -0.159 4.159 18 C -0.159 4.159 19 C -0.085 4.085 20 N -0.246 5.246 21 C -0.027 4.027 22 C -0.116 4.116 23 C -0.166 4.166 24 C -0.357 4.357 25 S 0.368 5.632 26 C -0.341 4.341 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.247 0.753 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.082 0.918 41 H 0.149 0.851 42 H 0.191 0.809 43 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 17.969 -24.742 -5.862 31.135 hybrid contribution 1.099 1.883 1.224 2.500 sum 19.068 -22.859 -4.638 30.126 Atomic orbital electron populations 1.70177 1.07978 1.28675 1.47943 1.26124 0.95957 1.03291 0.93717 0.85017 0.77826 0.75711 0.79516 1.18688 1.20364 1.18584 1.23176 0.95340 0.92058 1.58984 0.89966 1.85571 1.10454 0.99101 1.97031 1.23368 1.03574 0.94609 1.06511 1.20050 0.86270 0.86675 0.75202 1.90685 1.17387 1.86118 1.50344 1.45920 1.09876 1.05398 1.75205 1.21500 0.96551 0.79514 1.01174 1.22614 0.95308 0.95378 0.91395 0.90546 1.22381 1.02124 0.92541 0.98822 1.22479 0.97712 0.99340 0.96368 1.23196 0.97273 0.87347 1.00672 1.64714 1.24646 1.10835 1.24413 1.21054 0.90756 0.97953 0.92943 1.18760 0.97882 0.97214 0.97745 1.20221 1.01438 1.01097 0.93832 1.25831 1.01948 1.04235 1.03652 1.84181 1.36754 1.29059 1.13167 1.25702 1.02400 1.05634 1.00354 0.91981 0.87607 0.87334 0.75345 0.91480 0.92746 0.88975 0.90757 0.89066 0.91828 0.92267 0.90987 0.90499 0.91768 0.85118 0.80931 0.80211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.55 13.22 21.65 0.29 -56.27 16 2 C 0.01 0.80 5.49 84.86 0.47 1.26 16 3 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.55 -31.66 9.50 67.95 0.65 -31.01 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 10 C -0.13 -5.27 6.16 71.24 0.44 -4.83 16 11 C 0.53 20.40 7.85 87.66 0.69 21.09 16 12 O -0.57 -27.16 15.85 -3.05 -0.05 -27.21 16 13 N -0.71 -18.92 5.31 -463.05 -2.46 -21.38 16 14 C 0.14 3.19 5.12 86.38 0.44 3.63 16 15 C 0.06 0.95 2.70 45.06 0.12 1.07 16 16 H 0.08 0.96 7.64 -2.39 -0.02 0.94 16 17 C -0.12 -1.44 6.57 31.47 0.21 -1.23 16 18 C -0.12 -1.41 7.06 31.80 0.22 -1.18 16 19 C 0.04 0.55 5.07 86.65 0.44 0.99 16 20 N -0.52 -8.68 4.94 -862.60 -4.26 -12.95 16 21 C 0.10 1.59 4.84 85.56 0.41 2.01 16 22 C -0.10 -1.74 4.61 -20.92 -0.10 -1.84 16 23 C -0.14 -2.69 9.98 21.21 0.21 -2.48 16 24 C -0.22 -3.87 11.23 66.72 0.75 -3.12 16 25 S 0.10 1.51 23.34 -56.49 -1.32 0.19 16 26 C -0.20 -2.81 9.74 66.72 0.65 -2.16 16 27 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 29 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 30 H 0.41 8.50 5.61 -92.71 -0.52 7.98 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.55 8.12 -2.39 -0.02 1.53 16 33 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 1.00 7.69 -2.39 -0.02 0.98 16 35 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 0.59 7.70 -2.38 -0.02 0.57 16 38 H 0.07 1.11 7.73 -2.39 -0.02 1.09 16 39 H 0.08 1.31 5.50 -2.39 -0.01 1.30 16 40 H 0.06 0.76 7.90 -2.38 -0.02 0.74 16 41 H 0.13 2.86 8.06 -2.91 -0.02 2.83 16 42 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 43 H 0.18 1.63 7.86 -2.91 -0.02 1.61 16 Total: -1.00 -76.80 376.84 -0.84 -77.65 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.50 Total: 21.41 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 5.60 Total: -17.80 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -6.44 Total: -90.59 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.05 Total: -27.21 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -6.90 SS G_CDS: -2.48 Total: -9.38 kcal Total: -76.80 -0.84 -77.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481024798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.252 kcal (2) G-P(sol) polarization free energy of solvation -76.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds