Wall clock time and date at job start Sat Apr 11 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 120.00013 * 2 1 4 4 H 1.48495 * 109.47053 * 239.99896 * 3 2 1 5 5 H 1.48501 * 109.47142 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47240 * 119.99525 * 3 2 1 7 7 C 1.38798 * 120.00368 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00416 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99586 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99756 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47024 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00067 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99880 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99712 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.46760 * 186.52746 * 14 13 11 16 16 H 1.08999 * 110.42595 * 299.09580 * 15 14 13 17 17 C 1.54907 * 110.37417 * 176.78092 * 15 14 13 18 18 C 1.55392 * 101.74582 * 204.19402 * 17 15 14 19 19 C 1.54315 * 102.90156 * 35.47620 * 18 17 15 20 20 N 1.47445 * 107.37142 * 337.90022 * 19 18 17 21 21 C 1.46902 * 110.99980 * 236.66022 * 20 19 18 22 22 C 1.50691 * 109.47189 * 65.56039 * 21 20 19 23 23 C 1.38425 * 122.54172 * 269.73979 * 22 21 20 24 24 C 1.33389 * 114.92024 * 179.76235 * 23 22 21 25 25 S 1.75881 * 109.59658 * 0.47455 * 24 23 22 26 26 C 1.33397 * 122.53954 * 90.02768 * 22 21 20 27 27 H 0.97001 * 120.00123 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47084 * 60.00217 * 10 9 7 29 29 H 1.08996 * 109.46997 * 299.99816 * 10 9 7 30 30 H 0.97002 * 120.00219 * 0.02562 * 13 11 10 31 31 H 1.08997 * 109.47180 * 66.53010 * 14 13 11 32 32 H 1.09000 * 109.47417 * 306.52917 * 14 13 11 33 33 H 1.09000 * 110.99100 * 322.19664 * 17 15 14 34 34 H 1.09003 * 110.99334 * 86.00555 * 17 15 14 35 35 H 1.09002 * 110.67774 * 277.17628 * 18 17 15 36 36 H 1.09003 * 110.85176 * 153.86558 * 18 17 15 37 37 H 1.09000 * 109.89054 * 218.41127 * 19 18 17 38 38 H 1.09004 * 109.88752 * 97.38571 * 19 18 17 39 39 H 1.08992 * 109.46935 * 185.56418 * 21 20 19 40 40 H 1.08997 * 109.46849 * 305.56267 * 21 20 19 41 41 H 1.07999 * 122.53755 * 359.97438 * 23 22 21 42 42 H 1.08001 * 125.20037 * 180.20772 * 24 23 22 43 43 H 1.07991 * 125.19995 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0008 14 6 2.3305 -7.7150 0.0019 15 6 3.4940 -8.6951 0.1652 16 1 4.1957 -8.5938 -0.6628 17 6 2.9665 -10.1491 0.2503 18 6 4.1169 -10.8585 1.0171 19 6 4.5959 -9.7717 2.0023 20 7 4.1822 -8.4671 1.4537 21 6 5.3384 -7.5772 1.2828 22 6 6.2577 -8.1443 0.2320 23 6 7.2922 -9.0119 0.5373 24 6 8.0076 -9.4242 -0.5102 25 16 7.3800 -8.6888 -1.9795 26 6 6.1396 -7.8438 -1.0623 27 1 -0.4850 0.8400 -0.0004 28 1 3.1245 -3.7313 0.8905 29 1 3.1245 -3.7312 -0.8894 30 1 3.8011 -6.1835 0.0004 31 1 1.8188 -7.9122 -0.9400 32 1 1.6311 -7.8405 0.8285 33 1 2.0364 -10.1945 0.8168 34 1 2.8374 -10.5765 -0.7441 35 1 4.9185 -11.1399 0.3342 36 1 3.7445 -11.7299 1.5558 37 1 5.6814 -9.8075 2.0949 38 1 4.1353 -9.9266 2.9780 39 1 4.9949 -6.5910 0.9711 40 1 5.8750 -7.4932 2.2278 41 1 7.5019 -9.3333 1.5468 42 1 8.8469 -10.1023 -0.4629 43 1 5.3964 -7.1826 -1.4826 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481024803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:45 Heat of formation + Delta-G solvation = -13.214868 kcal Electronic energy + Delta-G solvation = -24839.575985 eV Core-core repulsion = 21329.880239 eV Total energy + Delta-G solvation = -3509.695745 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.40133 -40.24975 -38.15801 -35.66148 -34.57772 -33.32334 -31.98803 -30.51813 -29.81905 -27.67454 -27.06210 -25.78907 -23.86518 -22.23213 -21.49279 -21.21976 -19.93435 -19.66170 -18.41436 -17.93444 -17.63549 -17.03607 -16.87137 -16.48140 -16.40128 -15.81326 -15.74767 -15.07154 -14.77763 -14.61856 -14.43174 -14.22206 -14.00006 -13.80251 -13.47924 -13.35971 -13.21789 -13.16218 -12.99250 -12.85389 -12.65624 -12.44459 -12.23262 -12.15349 -11.91867 -11.72553 -11.67759 -11.49890 -11.12320 -10.91836 -10.27436 -10.08082 -9.70085 -9.46748 -9.20501 -8.65971 -8.33701 -6.11935 0.05790 0.74563 1.08156 1.27285 1.44385 1.47131 1.57060 1.63666 1.71674 2.26651 2.30832 2.97857 3.00185 3.32081 3.64303 3.74056 3.83475 3.93914 4.07748 4.13480 4.23457 4.26065 4.30499 4.31733 4.48895 4.50664 4.60109 4.61742 4.68053 4.79330 4.85492 4.87569 4.99127 5.05830 5.13251 5.18347 5.35543 5.41992 5.42242 5.45602 5.49992 6.00137 6.08012 6.20308 6.47798 7.07238 7.24677 8.75332 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.014655 B = 0.002635 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.181968 B =10623.325628 C =11794.232839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.148 6.148 10 C -0.130 4.130 11 C 0.532 3.468 12 O -0.565 6.565 13 N -0.708 5.708 14 C 0.138 3.862 15 C 0.054 3.946 16 H 0.083 0.917 17 C -0.120 4.120 18 C -0.129 4.129 19 C 0.037 3.963 20 N -0.522 5.522 21 C 0.101 3.899 22 C -0.135 4.135 23 C -0.132 4.132 24 C -0.209 4.209 25 S 0.093 5.907 26 C -0.218 4.218 27 H 0.271 0.729 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.406 0.594 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.154 0.846 42 H 0.183 0.817 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.098 -25.362 0.239 32.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.079 5.921 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.444 6.444 13 N -0.364 5.364 14 C 0.013 3.987 15 C -0.055 4.055 16 H 0.101 0.899 17 C -0.159 4.159 18 C -0.168 4.168 19 C -0.090 4.090 20 N -0.244 5.244 21 C -0.029 4.029 22 C -0.150 4.150 23 C -0.162 4.162 24 C -0.344 4.344 25 S 0.357 5.643 26 C -0.355 4.355 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.245 0.755 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.171 0.829 42 H 0.201 0.799 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 18.034 -25.457 -0.939 31.212 hybrid contribution 1.901 1.181 0.837 2.389 sum 19.935 -24.276 -0.102 31.412 Atomic orbital electron populations 1.70177 1.07981 1.28681 1.47936 1.26129 0.95964 1.03307 0.93712 0.85008 0.77817 0.75685 0.79514 1.18642 1.20367 1.18630 1.23178 0.95350 0.92044 1.58995 0.89945 1.85572 1.10405 0.99091 1.97033 1.23372 1.03622 0.94569 1.06540 1.20070 0.86279 0.86663 0.75204 1.90685 1.17336 1.86097 1.50258 1.45934 1.09819 1.05333 1.75285 1.21397 0.96478 0.79583 1.01195 1.23009 0.94902 0.94908 0.92666 0.89949 1.22711 0.99096 0.92351 1.01728 1.22724 0.97620 0.98414 0.98015 1.22914 1.00536 0.86926 0.98604 1.63822 1.23129 1.13705 1.23773 1.21283 0.88783 0.95810 0.97047 1.19682 0.99160 1.01137 0.94979 1.20236 0.95817 0.99391 1.00797 1.25916 1.06314 1.07291 0.94928 1.84468 1.26325 1.42265 1.11226 1.25705 1.04730 1.07822 0.97199 0.91977 0.87483 0.87399 0.75470 0.91776 0.92482 0.90729 0.89668 0.91290 0.89541 0.90918 0.90607 0.90685 0.88392 0.82851 0.79950 0.82082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.56 13.22 21.65 0.29 -56.27 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.90 29.55 68.60 2.03 45.93 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.55 -31.67 9.50 67.95 0.65 -31.02 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 10 C -0.13 -5.30 6.16 71.24 0.44 -4.86 16 11 C 0.53 20.50 7.85 87.66 0.69 21.18 16 12 O -0.57 -27.12 15.84 -3.04 -0.05 -27.17 16 13 N -0.71 -19.27 5.35 -463.05 -2.48 -21.75 16 14 C 0.14 3.35 5.39 86.38 0.47 3.81 16 15 C 0.05 0.92 2.44 45.38 0.11 1.03 16 16 H 0.08 1.35 4.42 -2.39 -0.01 1.34 16 17 C -0.12 -1.70 6.50 32.07 0.21 -1.49 16 18 C -0.13 -1.46 6.97 31.86 0.22 -1.24 16 19 C 0.04 0.48 6.40 86.64 0.55 1.04 16 20 N -0.52 -8.73 5.00 -865.19 -4.33 -13.06 16 21 C 0.10 1.54 5.28 85.55 0.45 1.99 16 22 C -0.13 -1.86 4.14 -20.92 -0.09 -1.95 16 23 C -0.13 -1.51 8.70 21.22 0.18 -1.33 16 24 C -0.21 -2.26 11.23 66.72 0.75 -1.51 16 25 S 0.09 1.24 23.34 -56.49 -1.32 -0.08 16 26 C -0.22 -3.23 8.83 66.72 0.59 -2.65 16 27 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 29 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 30 H 0.41 8.82 5.47 -92.71 -0.51 8.31 16 31 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.64 8.11 -2.39 -0.02 1.62 16 33 H 0.07 1.16 8.06 -2.39 -0.02 1.14 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.07 0.77 5.16 -2.39 -0.01 0.75 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.26 5.37 -2.39 -0.01 1.25 16 40 H 0.10 1.32 8.11 -2.39 -0.02 1.30 16 41 H 0.15 1.27 7.17 -2.91 -0.02 1.25 16 42 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 43 H 0.16 2.39 7.77 -2.92 -0.02 2.37 16 Total: -1.00 -75.78 369.88 -0.81 -76.59 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.52 Total: 21.10 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 5.69 Total: -15.75 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -6.52 Total: -91.08 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.05 Total: -27.17 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: -7.14 SS G_CDS: -2.48 Total: -9.62 kcal Total: -75.78 -0.81 -76.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481024803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.376 kcal (2) G-P(sol) polarization free energy of solvation -75.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds