Wall clock time and date at job start Sat Apr 11 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00140 * 2 1 4 4 H 1.48501 * 109.46797 * 269.99476 * 3 2 1 5 5 H 1.48492 * 109.47327 * 29.99325 * 3 2 1 6 6 H 1.48504 * 109.47288 * 149.99913 * 3 2 1 7 7 C 1.38818 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00198 * 157.94506 * 7 2 1 9 9 N 1.36943 * 119.99916 * 337.93604 * 7 2 1 10 10 C 1.46497 * 119.99747 * 324.93346 * 9 7 2 11 11 C 1.53003 * 109.46714 * 269.99219 * 10 9 7 12 12 N 1.46501 * 109.47134 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00114 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.50708 * 120.00069 * 180.02562 * 13 12 11 16 16 C 1.50697 * 109.47091 * 180.02562 * 15 13 12 17 17 C 1.38243 * 119.97952 * 265.25320 * 16 15 13 18 18 C 1.38190 * 120.03878 * 180.29863 * 17 16 15 19 19 C 1.38494 * 119.99815 * 359.72476 * 18 17 16 20 20 F 1.35091 * 120.01862 * 180.02562 * 19 18 17 21 21 C 1.38413 * 119.96048 * 359.97438 * 19 18 17 22 22 C 1.38335 * 119.96478 * 0.02562 * 21 19 18 23 23 Cl 1.73601 * 120.00089 * 180.02562 * 22 21 19 24 24 C 1.46498 * 119.99914 * 144.92650 * 9 7 2 25 25 C 1.53004 * 117.49898 * 3.23888 * 24 9 7 26 26 C 1.53004 * 117.49742 * 294.57966 * 24 9 7 27 27 H 0.97001 * 119.99767 * 356.07372 * 1 2 3 28 28 H 1.09004 * 109.47235 * 150.00015 * 10 9 7 29 29 H 1.08998 * 109.47495 * 29.99533 * 10 9 7 30 30 H 1.09003 * 109.47176 * 60.00941 * 11 10 9 31 31 H 1.08998 * 109.47396 * 300.00375 * 11 10 9 32 32 H 0.97006 * 120.00155 * 0.02562 * 12 11 10 33 33 H 1.08995 * 109.46843 * 59.99670 * 15 13 12 34 34 H 1.09007 * 109.46777 * 299.99813 * 15 13 12 35 35 H 1.07998 * 119.98538 * 359.97438 * 17 16 15 36 36 H 1.07997 * 119.99853 * 179.69974 * 18 17 16 37 37 H 1.07999 * 120.01738 * 180.02562 * 21 19 18 38 38 H 1.08991 * 115.54965 * 148.91327 * 24 9 7 39 39 H 1.09007 * 117.49722 * 0.02562 * 25 24 9 40 40 H 1.09000 * 117.49681 * 145.01958 * 25 24 9 41 41 H 1.09000 * 117.49922 * 214.97769 * 26 24 9 42 42 H 1.09001 * 117.49929 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.6998 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0309 -1.2366 -0.3506 9 7 1.4007 -2.3445 0.4465 10 6 0.4455 -2.2800 1.5554 11 6 1.1885 -2.4651 2.8800 12 7 0.2333 -2.4011 3.9889 13 6 0.6642 -2.5390 5.2584 14 8 1.8429 -2.7155 5.4829 15 6 -0.3186 -2.4738 6.3991 16 6 0.4135 -2.6547 7.7038 17 6 0.5010 -3.9089 8.2786 18 6 1.1667 -4.0752 9.4781 19 6 1.7515 -2.9859 10.1022 20 9 2.4029 -3.1481 11.2746 21 6 1.6692 -1.7313 9.5236 22 6 1.0024 -1.5666 8.3228 23 17 0.8991 0.0065 7.5958 24 6 1.7039 -3.6310 -0.1853 25 6 2.7655 -3.6443 -1.2870 26 6 1.2873 -3.8163 -1.6458 27 1 -0.4850 0.8381 0.0575 28 1 -0.2969 -3.0700 1.4419 29 1 -0.0521 -1.3102 1.5503 30 1 1.9309 -1.6751 2.9936 31 1 1.6862 -3.4348 2.8850 32 1 -0.7095 -2.2595 3.8094 33 1 -1.0601 -3.2644 6.2853 34 1 -0.8172 -1.5044 6.3940 35 1 0.0445 -4.7585 7.7926 36 1 1.2306 -5.0545 9.9290 37 1 2.1253 -0.8813 10.0093 38 1 1.6463 -4.5010 0.4687 39 1 3.2386 -2.6958 -1.5414 40 1 3.4061 -4.5233 -1.3580 41 1 0.9562 -4.8084 -1.9527 42 1 0.7873 -2.9812 -2.1364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481185151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:48 Heat of formation + Delta-G solvation = -17.879715 kcal Electronic energy + Delta-G solvation = -26344.616176 eV Core-core repulsion = 22266.461265 eV Total energy + Delta-G solvation = -4078.154911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.19853 -40.06729 -38.72395 -37.12375 -36.63826 -34.76200 -33.25081 -32.84385 -31.24069 -30.82545 -28.42434 -26.76560 -24.38123 -23.44636 -22.44326 -21.63669 -21.25997 -20.18792 -19.73592 -18.10976 -17.07176 -17.02030 -16.22703 -16.13259 -15.87324 -15.52610 -15.21761 -15.06977 -14.76934 -14.43743 -14.07803 -14.06010 -13.77074 -13.67720 -12.95991 -12.90621 -12.67077 -12.24254 -12.05782 -11.93930 -11.59192 -11.55670 -11.48451 -11.09108 -11.06389 -10.76147 -10.74435 -10.35505 -10.15108 -9.89492 -9.68546 -9.66066 -9.32838 -9.23675 -8.80642 -8.59548 -8.49952 -6.67156 -5.88576 -3.48225 0.70360 0.79850 1.85413 2.91215 3.06408 3.30682 3.39215 3.44249 3.63563 3.93666 4.30709 4.40381 4.42611 4.58111 4.82140 4.88595 5.02109 5.12106 5.22795 5.25670 5.29614 5.36024 5.60782 5.63758 5.78217 5.86893 6.00195 6.00983 6.08250 6.17635 6.26309 6.42178 6.46975 6.49879 6.58734 6.83430 6.95775 7.03955 7.18360 7.49895 7.73537 7.88076 8.38042 8.54806 9.05540 9.68291 10.22883 11.08007 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014691 B = 0.002705 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.484615 B =10347.695324 C =11468.157857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.012 3.988 3 Si 0.895 3.105 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.258 4.258 8 H 0.068 0.932 9 N -0.548 5.548 10 C 0.136 3.864 11 C 0.100 3.900 12 N -0.719 5.719 13 C 0.511 3.489 14 O -0.537 6.537 15 C -0.111 4.111 16 C -0.060 4.060 17 C -0.066 4.066 18 C -0.148 4.148 19 C 0.108 3.892 20 F -0.135 7.135 21 C -0.147 4.147 22 C 0.006 3.994 23 Cl -0.048 7.048 24 C 0.119 3.881 25 C -0.195 4.195 26 C -0.220 4.220 27 H 0.255 0.745 28 H 0.031 0.969 29 H 0.106 0.894 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.398 0.602 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.063 -6.676 17.426 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.188 4.188 3 Si 0.724 3.276 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.387 4.387 8 H 0.085 0.915 9 N -0.264 5.264 10 C 0.009 3.991 11 C -0.025 4.025 12 N -0.370 5.370 13 C 0.296 3.704 14 O -0.414 6.414 15 C -0.151 4.151 16 C -0.062 4.062 17 C -0.085 4.085 18 C -0.167 4.167 19 C 0.088 3.912 20 F -0.114 7.114 21 C -0.166 4.166 22 C -0.021 4.021 23 Cl -0.019 7.019 24 C 0.010 3.990 25 C -0.233 4.233 26 C -0.261 4.261 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.231 0.769 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.302 -6.493 17.492 18.948 hybrid contribution 0.154 1.088 -0.036 1.099 sum -3.148 -5.405 17.455 18.542 Atomic orbital electron populations 1.70025 1.05494 1.26109 1.50974 1.25108 0.95017 0.98777 0.99922 0.86427 0.79758 0.83517 0.77912 1.21146 1.21393 1.20152 1.19077 0.94532 0.85416 1.39725 0.91477 1.43231 1.49208 1.01680 1.32304 1.21103 0.90958 1.03584 0.83426 1.22313 0.92719 1.00973 0.86485 1.46060 1.12134 1.72849 1.05987 1.20221 0.89220 0.77245 0.83756 1.90718 1.17508 1.48752 1.84440 1.20777 0.98155 1.05865 0.90296 1.19255 0.98898 0.92224 0.95787 1.20831 0.97381 0.96186 0.94056 1.21184 1.00065 0.98649 0.96821 1.17429 0.96412 0.93909 0.83421 1.91516 1.78925 1.96220 1.44723 1.20912 1.02411 0.97355 0.95938 1.20472 0.99875 0.87574 0.94135 1.98407 1.96665 1.24284 1.82545 1.21229 1.00629 0.89925 0.87177 1.23044 0.91925 1.01960 1.06414 1.23362 0.97419 1.00672 1.04637 0.93505 0.95048 0.87658 0.91617 0.93216 0.76887 0.87403 0.87376 0.83990 0.84062 0.83690 0.89503 0.88420 0.90685 0.91180 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.90 11.33 55.49 0.63 -23.27 16 2 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 3 Si 0.90 21.09 29.61 -169.99 -5.03 16.06 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.26 -6.72 8.63 -15.05 -0.13 -6.85 16 8 H 0.07 1.77 6.55 -52.49 -0.34 1.43 16 9 N -0.55 -12.93 2.78 -165.66 -0.46 -13.39 16 10 C 0.14 2.90 5.45 -4.04 -0.02 2.88 16 11 C 0.10 1.94 6.00 -4.04 -0.02 1.92 16 12 N -0.72 -11.06 5.56 -60.29 -0.33 -11.39 16 13 C 0.51 7.77 7.82 -10.98 -0.09 7.68 16 14 O -0.54 -10.41 16.03 5.56 0.09 -10.32 16 15 C -0.11 -1.17 5.34 -29.03 -0.15 -1.33 16 16 C -0.06 -0.68 4.38 -104.58 -0.46 -1.14 16 17 C -0.07 -0.63 9.68 -39.60 -0.38 -1.01 16 18 C -0.15 -1.37 10.03 -39.50 -0.40 -1.77 16 19 C 0.11 1.14 7.30 -39.42 -0.29 0.86 16 20 F -0.14 -1.46 17.27 2.25 0.04 -1.43 16 21 C -0.15 -1.61 9.81 -39.48 -0.39 -2.00 16 22 C 0.01 0.08 6.31 -39.51 -0.25 -0.17 16 23 Cl -0.05 -0.61 27.40 -51.86 -1.42 -2.03 16 24 C 0.12 2.48 6.56 -67.93 -0.45 2.03 16 25 C -0.20 -3.79 9.80 -26.69 -0.26 -4.05 16 26 C -0.22 -4.36 10.36 -26.69 -0.28 -4.64 16 27 H 0.25 6.68 8.32 -40.82 -0.34 6.34 16 28 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 29 H 0.11 2.52 5.35 -51.93 -0.28 2.24 16 30 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.40 5.00 8.47 -40.82 -0.35 4.65 16 33 H 0.11 0.78 8.05 -51.93 -0.42 0.37 16 34 H 0.11 1.04 7.12 -51.93 -0.37 0.67 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 39 H 0.10 2.07 6.37 -51.92 -0.33 1.74 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -30.60 375.06 -9.94 -40.53 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.45 Total: 6.95 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -3.65 Total: -7.37 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.17 Total: -48.05 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.42 Total: -2.03 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.60 -9.94 -40.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481185151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.653 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds