Wall clock time and date at job start Sat Apr 11 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00140 * 2 1 4 4 H 1.48501 * 109.46797 * 269.99476 * 3 2 1 5 5 H 1.48492 * 109.47327 * 29.99325 * 3 2 1 6 6 H 1.48504 * 109.47288 * 149.99913 * 3 2 1 7 7 C 1.38818 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00198 * 157.94506 * 7 2 1 9 9 N 1.36943 * 119.99916 * 337.93604 * 7 2 1 10 10 C 1.46497 * 119.99747 * 324.93346 * 9 7 2 11 11 C 1.53003 * 109.46714 * 269.99219 * 10 9 7 12 12 N 1.46501 * 109.47134 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00114 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.50708 * 120.00069 * 180.02562 * 13 12 11 16 16 C 1.50697 * 109.47091 * 180.02562 * 15 13 12 17 17 C 1.38243 * 119.97952 * 265.25320 * 16 15 13 18 18 C 1.38190 * 120.03878 * 180.29863 * 17 16 15 19 19 C 1.38494 * 119.99815 * 359.72476 * 18 17 16 20 20 F 1.35091 * 120.01862 * 180.02562 * 19 18 17 21 21 C 1.38413 * 119.96048 * 359.97438 * 19 18 17 22 22 C 1.38335 * 119.96478 * 0.02562 * 21 19 18 23 23 Cl 1.73601 * 120.00089 * 180.02562 * 22 21 19 24 24 C 1.46498 * 119.99914 * 144.92650 * 9 7 2 25 25 C 1.53004 * 117.49898 * 3.23888 * 24 9 7 26 26 C 1.53004 * 117.49742 * 294.57966 * 24 9 7 27 27 H 0.97001 * 119.99767 * 356.07372 * 1 2 3 28 28 H 1.09004 * 109.47235 * 150.00015 * 10 9 7 29 29 H 1.08998 * 109.47495 * 29.99533 * 10 9 7 30 30 H 1.09003 * 109.47176 * 60.00941 * 11 10 9 31 31 H 1.08998 * 109.47396 * 300.00375 * 11 10 9 32 32 H 0.97006 * 120.00155 * 0.02562 * 12 11 10 33 33 H 1.08995 * 109.46843 * 59.99670 * 15 13 12 34 34 H 1.09007 * 109.46777 * 299.99813 * 15 13 12 35 35 H 1.07998 * 119.98538 * 359.97438 * 17 16 15 36 36 H 1.07997 * 119.99853 * 179.69974 * 18 17 16 37 37 H 1.07999 * 120.01738 * 180.02562 * 21 19 18 38 38 H 1.08991 * 115.54965 * 148.91327 * 24 9 7 39 39 H 1.09007 * 117.49722 * 0.02562 * 25 24 9 40 40 H 1.09000 * 117.49681 * 145.01958 * 25 24 9 41 41 H 1.09000 * 117.49922 * 214.97769 * 26 24 9 42 42 H 1.09001 * 117.49929 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4477 2.6527 0.6998 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0309 -1.2366 -0.3506 9 7 1.4007 -2.3445 0.4465 10 6 0.4455 -2.2800 1.5554 11 6 1.1885 -2.4651 2.8800 12 7 0.2333 -2.4011 3.9889 13 6 0.6642 -2.5390 5.2584 14 8 1.8429 -2.7155 5.4829 15 6 -0.3186 -2.4738 6.3991 16 6 0.4135 -2.6547 7.7038 17 6 0.5010 -3.9089 8.2786 18 6 1.1667 -4.0752 9.4781 19 6 1.7515 -2.9859 10.1022 20 9 2.4029 -3.1481 11.2746 21 6 1.6692 -1.7313 9.5236 22 6 1.0024 -1.5666 8.3228 23 17 0.8991 0.0065 7.5958 24 6 1.7039 -3.6310 -0.1853 25 6 2.7655 -3.6443 -1.2870 26 6 1.2873 -3.8163 -1.6458 27 1 -0.4850 0.8381 0.0575 28 1 -0.2969 -3.0700 1.4419 29 1 -0.0521 -1.3102 1.5503 30 1 1.9309 -1.6751 2.9936 31 1 1.6862 -3.4348 2.8850 32 1 -0.7095 -2.2595 3.8094 33 1 -1.0601 -3.2644 6.2853 34 1 -0.8172 -1.5044 6.3940 35 1 0.0445 -4.7585 7.7926 36 1 1.2306 -5.0545 9.9290 37 1 2.1253 -0.8813 10.0093 38 1 1.6463 -4.5010 0.4687 39 1 3.2386 -2.6958 -1.5414 40 1 3.4061 -4.5233 -1.3580 41 1 0.9562 -4.8084 -1.9527 42 1 0.7873 -2.9812 -2.1364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481185151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:47 Heat of formation + Delta-G solvation = -34.512333 kcal Electronic energy + Delta-G solvation = -26345.337421 eV Core-core repulsion = 22266.461265 eV Total energy + Delta-G solvation = -4078.876155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.01430 -41.08455 -39.79879 -38.79621 -37.53742 -36.25670 -34.94866 -33.78738 -32.60418 -32.00565 -29.81323 -28.01378 -26.16981 -24.22025 -23.68308 -23.01614 -22.72846 -21.59126 -21.29436 -18.92581 -18.48441 -17.87272 -17.75468 -17.30841 -17.22465 -16.70618 -16.51759 -16.35327 -16.02945 -15.69302 -15.58464 -14.87221 -14.84187 -14.78605 -14.46228 -14.31079 -13.92698 -13.75648 -13.30269 -13.06355 -12.95419 -12.90113 -12.62256 -12.50357 -12.39950 -12.27613 -12.13573 -12.01044 -11.89868 -11.65459 -11.37645 -11.01140 -10.86236 -10.49653 -10.04179 -9.96738 -9.64965 -8.57062 -7.84780 -5.47805 -0.10963 0.02169 0.97771 1.40370 1.45219 1.53534 1.72492 2.13462 2.44536 2.57565 3.13344 3.14715 3.40827 3.52402 3.57898 3.63371 3.88698 4.01426 4.08291 4.30570 4.33967 4.39378 4.43326 4.47569 4.53518 4.63266 4.64678 4.83424 4.85440 4.88563 4.94909 5.04278 5.05222 5.23155 5.27024 5.34289 5.52068 5.55026 5.67288 5.67574 5.78715 6.42194 6.67899 7.11912 7.35598 7.81359 8.29673 9.06900 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014691 B = 0.002705 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.484615 B =10347.695324 C =11468.157857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.029 4.029 3 Si 0.943 3.057 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.262 4.262 8 H 0.057 0.943 9 N -0.566 5.566 10 C 0.143 3.857 11 C 0.124 3.876 12 N -0.713 5.713 13 C 0.511 3.489 14 O -0.581 6.581 15 C -0.101 4.101 16 C -0.075 4.075 17 C -0.063 4.063 18 C -0.143 4.143 19 C 0.097 3.903 20 F -0.139 7.139 21 C -0.157 4.157 22 C -0.011 4.011 23 Cl -0.064 7.064 24 C 0.100 3.900 25 C -0.187 4.187 26 C -0.211 4.211 27 H 0.253 0.747 28 H 0.048 0.952 29 H 0.081 0.919 30 H 0.026 0.974 31 H 0.047 0.953 32 H 0.413 0.587 33 H 0.150 0.850 34 H 0.118 0.882 35 H 0.173 0.827 36 H 0.169 0.831 37 H 0.151 0.849 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.843 -8.815 18.201 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.226 4.226 3 Si 0.772 3.228 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.392 4.392 8 H 0.074 0.926 9 N -0.284 5.284 10 C 0.017 3.983 11 C -0.003 4.003 12 N -0.365 5.365 13 C 0.298 3.702 14 O -0.461 6.461 15 C -0.140 4.140 16 C -0.077 4.077 17 C -0.081 4.081 18 C -0.161 4.161 19 C 0.078 3.922 20 F -0.117 7.117 21 C -0.176 4.176 22 C -0.038 4.038 23 Cl -0.035 7.035 24 C -0.008 4.008 25 C -0.225 4.225 26 C -0.252 4.252 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.044 0.956 31 H 0.065 0.935 32 H 0.249 0.751 33 H 0.168 0.832 34 H 0.136 0.864 35 H 0.190 0.810 36 H 0.186 0.814 37 H 0.168 0.832 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.122 0.878 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.111 -8.638 18.270 20.623 hybrid contribution 0.431 1.668 -0.252 1.741 sum -3.680 -6.970 18.019 19.667 Atomic orbital electron populations 1.70107 1.06182 1.26306 1.52292 1.25608 0.95653 1.00804 1.00581 0.85674 0.78559 0.80970 0.77635 1.21017 1.21385 1.20538 1.19168 0.94278 0.86747 1.39017 0.92563 1.43441 1.49449 1.02109 1.33384 1.20977 0.90907 1.02739 0.83709 1.21734 0.92311 0.99188 0.87068 1.45909 1.12318 1.72874 1.05437 1.20997 0.89418 0.75545 0.84251 1.90700 1.19757 1.50614 1.85033 1.20797 0.97429 1.08070 0.87722 1.19485 0.99309 0.92750 0.96133 1.21217 0.96731 0.96290 0.93902 1.21534 0.98721 0.99357 0.96518 1.17620 0.96830 0.94279 0.83517 1.91506 1.79079 1.96224 1.44939 1.21035 1.02567 0.98069 0.95968 1.20654 1.01060 0.87327 0.94778 1.98395 1.96809 1.25467 1.82827 1.21537 1.01809 0.89471 0.87967 1.23055 0.92049 1.02236 1.05143 1.23268 0.97470 1.01090 1.03349 0.93768 0.93331 0.90131 0.95550 0.93495 0.75051 0.83177 0.86403 0.80959 0.81356 0.83171 0.86964 0.90862 0.87223 0.87790 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.73 11.33 21.65 0.25 -49.49 16 2 C -0.03 -1.53 4.96 84.86 0.42 -1.11 16 3 Si 0.94 44.17 29.61 68.60 2.03 46.20 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.26 -13.88 8.63 84.03 0.73 -13.16 16 8 H 0.06 3.05 6.55 -2.91 -0.02 3.03 16 9 N -0.57 -26.79 2.78 -678.03 -1.88 -28.68 16 10 C 0.14 6.08 5.45 86.38 0.47 6.55 16 11 C 0.12 4.79 6.00 86.38 0.52 5.31 16 12 N -0.71 -21.15 5.56 -463.05 -2.57 -23.72 16 13 C 0.51 14.84 7.82 87.66 0.69 15.53 16 14 O -0.58 -22.28 16.03 -3.02 -0.05 -22.33 16 15 C -0.10 -1.88 5.34 29.10 0.16 -1.72 16 16 C -0.08 -1.55 4.38 -19.84 -0.09 -1.64 16 17 C -0.06 -1.01 9.68 22.26 0.22 -0.80 16 18 C -0.14 -2.26 10.03 22.32 0.22 -2.04 16 19 C 0.10 1.93 7.30 22.37 0.16 2.09 16 20 F -0.14 -2.86 17.27 44.97 0.78 -2.08 16 21 C -0.16 -3.38 9.81 22.33 0.22 -3.16 16 22 C -0.01 -0.26 6.31 22.32 0.14 -0.12 16 23 Cl -0.06 -1.61 27.40 -2.72 -0.07 -1.69 16 24 C 0.10 4.01 6.56 44.99 0.30 4.31 16 25 C -0.19 -6.97 9.80 30.62 0.30 -6.67 16 26 C -0.21 -8.04 10.36 30.62 0.32 -7.72 16 27 H 0.25 13.47 8.32 -92.71 -0.77 12.70 16 28 H 0.05 1.86 8.07 -2.39 -0.02 1.84 16 29 H 0.08 3.90 5.35 -2.39 -0.01 3.89 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.41 9.68 8.47 -92.70 -0.79 8.90 16 33 H 0.15 1.52 8.05 -2.39 -0.02 1.50 16 34 H 0.12 2.01 7.12 -2.38 -0.02 2.00 16 35 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 37 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 38 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 39 H 0.07 3.10 6.37 -2.38 -0.02 3.09 16 40 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -68.07 375.06 3.51 -64.55 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.27 Total: 21.57 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 4.76 Total: -4.35 kcal Atomic # 7 Polarization: -97.67 SS G_CDS: -4.21 Total: -101.88 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.78 Total: -2.08 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.07 Total: -1.69 kcal Total: -68.07 3.51 -64.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481185151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.042 kcal (2) G-P(sol) polarization free energy of solvation -68.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds