Wall clock time and date at job start Sat Apr 11 2020 05:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86807 * 119.99759 * 2 1 4 4 H 1.48500 * 109.46707 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47136 * 299.99553 * 3 2 1 6 6 H 1.48505 * 109.46990 * 59.99962 * 3 2 1 7 7 C 1.38797 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99930 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99730 * 0.02562 * 7 2 1 10 10 C 1.81007 * 100.00020 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47330 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00281 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00036 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00170 * 179.97438 * 13 11 10 15 15 C 1.53509 * 114.17513 * 204.99914 * 14 13 11 16 16 N 1.47481 * 87.93717 * 220.14013 * 15 14 13 17 17 C 1.46897 * 110.99797 * 138.70139 * 16 15 14 18 18 C 1.53003 * 109.46821 * 170.00240 * 17 16 15 19 19 C 1.53005 * 109.46776 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.46909 * 180.02562 * 19 18 17 21 21 C 1.38423 * 122.53613 * 270.00211 * 20 19 18 22 22 C 1.33390 * 114.91977 * 180.02562 * 21 20 19 23 23 S 1.75887 * 109.59565 * 359.75483 * 22 21 20 24 24 C 1.33391 * 122.54338 * 90.02238 * 20 19 18 25 25 C 1.47482 * 87.83048 * 27.01279 * 16 15 14 26 26 H 0.97004 * 119.99827 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46678 * 59.99741 * 10 9 7 28 28 H 1.09005 * 109.46682 * 300.00286 * 10 9 7 29 29 H 0.97002 * 120.00138 * 0.02562 * 13 11 10 30 30 H 1.09001 * 113.25785 * 337.95406 * 14 13 11 31 31 H 1.09003 * 113.47605 * 105.37152 * 15 14 13 32 32 H 1.08999 * 113.47382 * 334.91137 * 15 14 13 33 33 H 1.09005 * 109.47270 * 50.00197 * 17 16 15 34 34 H 1.09007 * 109.47451 * 290.00297 * 17 16 15 35 35 H 1.08994 * 109.46921 * 60.00320 * 18 17 16 36 36 H 1.08994 * 109.47207 * 300.00012 * 18 17 16 37 37 H 1.08994 * 109.47301 * 60.00348 * 19 18 17 38 38 H 1.09003 * 109.46866 * 299.99784 * 19 18 17 39 39 H 1.08001 * 122.54000 * 359.97438 * 21 20 19 40 40 H 1.07998 * 125.20164 * 180.02562 * 22 21 20 41 41 H 1.08002 * 125.19887 * 359.95301 * 24 20 19 42 42 H 1.08996 * 113.47695 * 87.75781 * 25 16 15 43 43 H 1.09007 * 113.47187 * 218.22349 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9874 -5.3026 0.0017 12 8 0.7912 -5.5023 0.0009 13 7 2.8442 -6.3430 0.0022 14 6 2.3305 -7.7150 0.0024 15 6 3.2985 -8.7487 0.5948 16 7 2.8893 -9.6700 -0.4817 17 6 4.0466 -10.3963 -1.0212 18 6 3.5613 -11.5110 -1.9501 19 6 4.7667 -12.2679 -2.5115 20 6 4.2888 -13.3654 -3.4270 21 6 4.0114 -14.6440 -2.9748 22 6 3.5988 -15.4955 -3.9151 23 16 3.5377 -14.6739 -5.4691 24 6 4.1013 -13.1786 -4.7343 25 6 2.5801 -8.4843 -1.3025 26 1 -0.4850 0.8401 -0.0004 27 1 3.1238 -3.7308 0.8925 28 1 3.1252 -3.7316 -0.8875 29 1 3.8010 -6.1834 0.0032 30 1 1.3102 -7.7925 0.3780 31 1 3.0137 -9.0899 1.5900 32 1 4.3446 -8.4481 0.5349 33 1 4.6181 -10.8301 -0.2006 34 1 4.6797 -9.7072 -1.5803 35 1 2.9900 -11.0771 -2.7707 36 1 2.9283 -12.2000 -1.3911 37 1 5.3377 -12.7018 -1.6907 38 1 5.4001 -11.5790 -3.0705 39 1 4.1215 -14.9306 -1.9394 40 1 3.3377 -16.5298 -3.7470 41 1 4.2660 -12.2498 -5.2604 42 1 3.4344 -8.1132 -1.8686 43 1 1.6862 -8.6015 -1.9152 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481544425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:38 Heat of formation + Delta-G solvation = 24.958597 kcal Electronic energy + Delta-G solvation = -22832.378661 eV Core-core repulsion = 19324.338241 eV Total energy + Delta-G solvation = -3508.040420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.70447 -38.92406 -38.53727 -34.79459 -33.34795 -32.44134 -30.57534 -29.37375 -27.94459 -26.23336 -25.54478 -25.05599 -23.05476 -21.62057 -20.44006 -20.35715 -19.08537 -17.99680 -17.82827 -16.76515 -16.48347 -16.01398 -15.66087 -15.50627 -14.81918 -14.80060 -14.39850 -14.34786 -13.78666 -13.63191 -13.38966 -13.20512 -13.03260 -12.88202 -12.82638 -12.52790 -12.37847 -12.19514 -11.94850 -11.65858 -11.29135 -11.16544 -11.07941 -11.03451 -10.88544 -10.80673 -10.73997 -9.82102 -9.57562 -9.20234 -9.17869 -9.09045 -8.91959 -8.74725 -8.24756 -6.51463 -6.23036 -3.93685 0.62497 1.28900 1.61332 2.30106 2.96012 3.00793 3.20619 3.26154 3.30575 3.56568 3.87018 4.18924 4.25844 4.43322 4.54226 4.57675 4.62158 4.77893 4.90093 4.96048 5.04481 5.08782 5.12336 5.14069 5.17496 5.22635 5.31988 5.37072 5.45624 5.53617 5.58752 5.64725 5.71597 5.85918 5.89932 5.96146 6.02457 6.05066 6.11146 6.14040 6.55435 6.73365 7.58518 7.64368 8.34055 8.56146 9.22476 10.84434 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.026633 B = 0.001426 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.084067 B =19636.493613 C =20007.177315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.513 6.513 13 N -0.729 5.729 14 C 0.125 3.875 15 C -0.011 4.011 16 N -0.467 5.467 17 C 0.021 3.979 18 C -0.103 4.103 19 C -0.060 4.060 20 C -0.097 4.097 21 C -0.130 4.130 22 C -0.212 4.212 23 S 0.087 5.913 24 C -0.212 4.212 25 C -0.018 4.018 26 H 0.268 0.732 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.398 0.602 30 H 0.128 0.872 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.140 0.860 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.073 0.927 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.123 -29.892 -5.881 33.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.387 6.387 13 N -0.382 5.382 14 C 0.018 3.982 15 C -0.141 4.141 16 N -0.189 5.189 17 C -0.108 4.108 18 C -0.141 4.141 19 C -0.101 4.101 20 C -0.110 4.110 21 C -0.160 4.160 22 C -0.348 4.348 23 S 0.351 5.649 24 C -0.347 4.347 25 C -0.148 4.148 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.232 0.768 30 H 0.146 0.854 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.158 0.842 40 H 0.181 0.819 41 H 0.181 0.819 42 H 0.091 0.909 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.048 -31.111 -7.263 33.490 hybrid contribution 3.565 2.207 1.128 4.342 sum 13.613 -28.904 -6.135 32.533 Atomic orbital electron populations 1.70027 1.05955 1.27367 1.46887 1.24992 0.95021 0.99033 0.94519 0.86118 0.79567 0.81890 0.77918 1.19634 1.20558 1.20550 1.22907 0.94942 0.91650 1.58914 0.90875 1.85420 1.04843 0.96335 1.96714 1.23542 1.06646 0.95346 1.04949 1.20366 0.86585 0.86318 0.74699 1.90708 1.15348 1.85527 1.47108 1.45962 1.09770 1.05015 1.77483 1.22486 1.00040 0.79921 0.95731 1.24275 0.98721 0.92721 0.98379 1.68834 1.29481 1.14446 1.06172 1.22715 0.92650 0.96933 0.98482 1.21423 0.97220 0.96713 0.98789 1.20321 0.97648 0.94687 0.97432 1.18935 1.02589 0.95667 0.93789 1.20127 1.02471 0.92679 1.00763 1.25616 1.09300 1.03983 0.95862 1.84345 1.65922 1.03404 1.11198 1.25499 1.09440 1.01940 0.97822 1.24525 1.02447 0.90339 0.97526 0.92214 0.89151 0.89213 0.76776 0.85373 0.88879 0.90983 0.90822 0.93572 0.91699 0.90918 0.90806 0.91070 0.84218 0.81913 0.81943 0.90924 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.04 13.22 55.49 0.73 -25.31 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 11 C 0.53 9.67 7.85 -10.99 -0.09 9.58 16 12 O -0.51 -11.46 15.45 5.56 0.09 -11.38 16 13 N -0.73 -9.22 5.39 -53.54 -0.29 -9.51 16 14 C 0.12 1.44 4.59 -67.71 -0.31 1.13 16 15 C -0.01 -0.10 7.45 -7.56 -0.06 -0.15 16 16 N -0.47 -4.35 6.33 -244.66 -1.55 -5.90 16 17 C 0.02 0.15 4.82 -3.82 -0.02 0.13 16 18 C -0.10 -0.74 5.52 -26.73 -0.15 -0.88 16 19 C -0.06 -0.36 5.47 -27.88 -0.15 -0.51 16 20 C -0.10 -0.70 5.06 -106.25 -0.54 -1.23 16 21 C -0.13 -0.89 9.98 -41.21 -0.41 -1.30 16 22 C -0.21 -1.38 11.23 29.04 0.33 -1.05 16 23 S 0.09 0.60 23.34 -107.50 -2.51 -1.91 16 24 C -0.21 -1.53 10.98 29.04 0.32 -1.21 16 25 C -0.02 -0.18 7.53 -7.56 -0.06 -0.24 16 26 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 28 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 29 H 0.40 3.81 8.75 -40.82 -0.36 3.45 16 30 H 0.13 1.78 7.45 -51.93 -0.39 1.39 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.51 7.90 -51.93 -0.41 0.10 16 33 H 0.07 0.47 8.08 -51.93 -0.42 0.06 16 34 H 0.05 0.31 7.30 -51.92 -0.38 -0.07 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.38 8.13 -51.93 -0.42 -0.04 16 38 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 39 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.07 0.67 7.42 -51.93 -0.39 0.28 16 43 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -34.01 389.09 -12.14 -46.16 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.53 Total: 0.97 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -0.71 Total: -11.42 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: -1.10 Total: -40.71 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.01 SS G_CDS: -4.72 Total: -5.73 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.01 -12.14 -46.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481544425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.114 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds