Wall clock time and date at job start Sat Apr 11 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86807 * 119.99759 * 2 1 4 4 H 1.48500 * 109.46707 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47136 * 299.99553 * 3 2 1 6 6 H 1.48505 * 109.46990 * 59.99962 * 3 2 1 7 7 C 1.38797 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99930 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99730 * 0.02562 * 7 2 1 10 10 C 1.81007 * 100.00020 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47330 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00281 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00036 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00170 * 179.97438 * 13 11 10 15 15 C 1.53509 * 114.17513 * 204.99914 * 14 13 11 16 16 N 1.47481 * 87.93717 * 220.14013 * 15 14 13 17 17 C 1.46897 * 110.99797 * 138.70139 * 16 15 14 18 18 C 1.53003 * 109.46821 * 170.00240 * 17 16 15 19 19 C 1.53005 * 109.46776 * 180.02562 * 18 17 16 20 20 C 1.50700 * 109.46909 * 180.02562 * 19 18 17 21 21 C 1.38423 * 122.53613 * 270.00211 * 20 19 18 22 22 C 1.33390 * 114.91977 * 180.02562 * 21 20 19 23 23 S 1.75887 * 109.59565 * 359.75483 * 22 21 20 24 24 C 1.33391 * 122.54338 * 90.02238 * 20 19 18 25 25 C 1.47482 * 87.83048 * 27.01279 * 16 15 14 26 26 H 0.97004 * 119.99827 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46678 * 59.99741 * 10 9 7 28 28 H 1.09005 * 109.46682 * 300.00286 * 10 9 7 29 29 H 0.97002 * 120.00138 * 0.02562 * 13 11 10 30 30 H 1.09001 * 113.25785 * 337.95406 * 14 13 11 31 31 H 1.09003 * 113.47605 * 105.37152 * 15 14 13 32 32 H 1.08999 * 113.47382 * 334.91137 * 15 14 13 33 33 H 1.09005 * 109.47270 * 50.00197 * 17 16 15 34 34 H 1.09007 * 109.47451 * 290.00297 * 17 16 15 35 35 H 1.08994 * 109.46921 * 60.00320 * 18 17 16 36 36 H 1.08994 * 109.47207 * 300.00012 * 18 17 16 37 37 H 1.08994 * 109.47301 * 60.00348 * 19 18 17 38 38 H 1.09003 * 109.46866 * 299.99784 * 19 18 17 39 39 H 1.08001 * 122.54000 * 359.97438 * 21 20 19 40 40 H 1.07998 * 125.20164 * 180.02562 * 22 21 20 41 41 H 1.08002 * 125.19887 * 359.95301 * 24 20 19 42 42 H 1.08996 * 113.47695 * 87.75781 * 25 16 15 43 43 H 1.09007 * 113.47187 * 218.22349 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9874 -5.3026 0.0017 12 8 0.7912 -5.5023 0.0009 13 7 2.8442 -6.3430 0.0022 14 6 2.3305 -7.7150 0.0024 15 6 3.2985 -8.7487 0.5948 16 7 2.8893 -9.6700 -0.4817 17 6 4.0466 -10.3963 -1.0212 18 6 3.5613 -11.5110 -1.9501 19 6 4.7667 -12.2679 -2.5115 20 6 4.2888 -13.3654 -3.4270 21 6 4.0114 -14.6440 -2.9748 22 6 3.5988 -15.4955 -3.9151 23 16 3.5377 -14.6739 -5.4691 24 6 4.1013 -13.1786 -4.7343 25 6 2.5801 -8.4843 -1.3025 26 1 -0.4850 0.8401 -0.0004 27 1 3.1238 -3.7308 0.8925 28 1 3.1252 -3.7316 -0.8875 29 1 3.8010 -6.1834 0.0032 30 1 1.3102 -7.7925 0.3780 31 1 3.0137 -9.0899 1.5900 32 1 4.3446 -8.4481 0.5349 33 1 4.6181 -10.8301 -0.2006 34 1 4.6797 -9.7072 -1.5803 35 1 2.9900 -11.0771 -2.7707 36 1 2.9283 -12.2000 -1.3911 37 1 5.3377 -12.7018 -1.6907 38 1 5.4001 -11.5790 -3.0705 39 1 4.1215 -14.9306 -1.9394 40 1 3.3377 -16.5298 -3.7470 41 1 4.2660 -12.2498 -5.2604 42 1 3.4344 -8.1132 -1.8686 43 1 1.6862 -8.6015 -1.9152 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481544425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:37 Heat of formation + Delta-G solvation = 1.214406 kcal Electronic energy + Delta-G solvation = -22833.408286 eV Core-core repulsion = 19324.338241 eV Total energy + Delta-G solvation = -3509.070045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.60762 -39.99415 -39.28818 -35.63748 -34.58138 -34.32057 -31.45281 -30.47163 -28.72689 -27.65545 -26.98744 -25.78957 -23.64998 -22.30515 -21.67103 -21.24990 -19.78106 -19.57991 -18.50927 -17.95467 -17.62578 -16.87601 -16.71101 -16.64655 -16.26334 -16.07506 -15.85216 -15.07452 -14.91840 -14.60083 -14.39499 -14.13048 -13.84406 -13.79942 -13.67475 -13.50245 -13.32430 -13.15293 -12.95963 -12.91025 -12.61408 -12.52862 -12.40506 -11.93559 -11.91108 -11.69633 -11.46611 -11.40848 -11.15303 -11.00903 -10.26056 -10.09835 -9.91907 -9.69762 -9.27377 -8.65949 -8.34149 -6.12122 0.11677 0.79005 1.11098 1.27538 1.42090 1.47794 1.58130 1.58722 1.79376 2.21550 2.28466 3.00312 3.02206 3.33521 3.46733 3.80261 3.87369 3.94831 4.01138 4.08394 4.19626 4.25330 4.32304 4.41176 4.49320 4.51909 4.53347 4.63704 4.70338 4.75218 4.80180 4.81027 4.89508 4.96124 5.04001 5.19055 5.32981 5.41689 5.42986 5.46685 5.56705 5.63413 6.05175 6.20743 6.49908 7.07466 7.24313 8.75312 Molecular weight = 340.10amu Principal moments of inertia in cm(-1) A = 0.026633 B = 0.001426 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.084067 B =19636.493613 C =20007.177315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.565 6.565 13 N -0.700 5.700 14 C 0.110 3.890 15 C 0.006 3.994 16 N -0.481 5.481 17 C 0.022 3.978 18 C -0.096 4.096 19 C -0.054 4.054 20 C -0.106 4.106 21 C -0.142 4.142 22 C -0.215 4.215 23 S 0.074 5.926 24 C -0.226 4.226 25 C -0.011 4.011 26 H 0.271 0.729 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.418 0.582 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.154 0.846 40 H 0.181 0.819 41 H 0.171 0.829 42 H 0.089 0.911 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.454 -30.459 -5.561 35.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.280 4.280 11 C 0.322 3.678 12 O -0.443 6.443 13 N -0.353 5.353 14 C 0.004 3.996 15 C -0.124 4.124 16 N -0.203 5.203 17 C -0.106 4.106 18 C -0.134 4.134 19 C -0.094 4.094 20 C -0.118 4.118 21 C -0.172 4.172 22 C -0.351 4.351 23 S 0.337 5.663 24 C -0.361 4.361 25 C -0.141 4.141 26 H 0.080 0.920 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.256 0.744 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.172 0.828 40 H 0.199 0.801 41 H 0.188 0.812 42 H 0.107 0.893 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.441 -31.724 -6.944 35.147 hybrid contribution 2.558 2.207 1.020 3.529 sum 15.999 -29.517 -5.924 34.092 Atomic orbital electron populations 1.70193 1.08009 1.28529 1.48105 1.26125 0.95940 1.03327 0.93752 0.84904 0.78654 0.76344 0.78026 1.17932 1.20012 1.19993 1.23244 0.95385 0.91969 1.58725 0.89799 1.85624 1.10680 0.99336 1.97054 1.23378 1.03518 0.94192 1.06959 1.20125 0.86273 0.86757 0.74609 1.90701 1.17570 1.86058 1.49935 1.45647 1.10145 1.04362 1.75194 1.22562 0.99748 0.79485 0.97780 1.24232 0.99147 0.90726 0.98250 1.68838 1.31064 1.14236 1.06201 1.22763 0.91986 0.96826 0.99025 1.21326 0.97410 0.96566 0.98144 1.20291 0.97150 0.94354 0.97623 1.19173 1.02457 0.96227 0.93966 1.20379 1.02557 0.92687 1.01594 1.25911 1.08896 1.04881 0.95375 1.84364 1.66165 1.03796 1.11944 1.25709 1.09861 1.02336 0.98197 1.24452 1.02465 0.90488 0.96705 0.92021 0.86981 0.87056 0.74397 0.88338 0.88418 0.88267 0.89308 0.92396 0.93237 0.92075 0.89541 0.90324 0.82825 0.80143 0.81190 0.89263 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.91 13.22 21.65 0.29 -55.62 16 2 C 0.01 0.75 5.49 84.86 0.47 1.21 16 3 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.55 -30.85 9.50 67.95 0.65 -30.21 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 10 C -0.13 -4.95 6.16 71.23 0.44 -4.51 16 11 C 0.54 19.15 7.85 87.66 0.69 19.84 16 12 O -0.56 -26.00 15.45 -3.03 -0.05 -26.05 16 13 N -0.70 -16.32 5.39 -441.70 -2.38 -18.70 16 14 C 0.11 2.41 4.59 45.45 0.21 2.62 16 15 C 0.01 0.08 7.45 83.57 0.62 0.70 16 16 N -0.48 -7.94 6.33 -927.97 -5.88 -13.82 16 17 C 0.02 0.26 4.82 86.30 0.42 0.67 16 18 C -0.10 -1.21 5.52 30.60 0.17 -1.04 16 19 C -0.05 -0.53 5.47 29.85 0.16 -0.36 16 20 C -0.11 -1.38 5.06 -20.92 -0.11 -1.49 16 21 C -0.14 -1.75 9.98 21.22 0.21 -1.54 16 22 C -0.22 -2.58 11.23 66.72 0.75 -1.83 16 23 S 0.07 0.98 23.34 -56.49 -1.32 -0.34 16 24 C -0.23 -3.10 10.98 66.72 0.73 -2.37 16 25 C -0.01 -0.21 7.53 83.57 0.63 0.42 16 26 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 27 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 28 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 29 H 0.42 6.48 8.75 -92.71 -0.81 5.67 16 30 H 0.10 2.82 7.45 -2.39 -0.02 2.80 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 0.94 7.90 -2.39 -0.02 0.92 16 33 H 0.09 0.80 8.08 -2.38 -0.02 0.78 16 34 H 0.06 0.56 7.30 -2.38 -0.02 0.54 16 35 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.09 0.64 8.13 -2.39 -0.02 0.62 16 38 H 0.08 0.67 8.12 -2.39 -0.02 0.65 16 39 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 40 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 41 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.09 1.38 7.42 -2.39 -0.02 1.37 16 43 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -76.76 389.09 -2.24 -79.00 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: 0.20 Total: 17.77 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: 6.03 Total: -17.86 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -7.97 Total: -88.14 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -2.48 Total: -9.99 kcal Total: -76.76 -2.24 -79.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481544425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.219 kcal (2) G-P(sol) polarization free energy of solvation -76.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds