Wall clock time and date at job start Sat Apr 11 2020 05:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00405 * 2 1 4 4 H 1.48491 * 109.47324 * 270.00462 * 3 2 1 5 5 H 1.48506 * 109.46823 * 29.99994 * 3 2 1 6 6 H 1.48500 * 109.47383 * 149.99470 * 3 2 1 7 7 C 1.38817 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00031 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00002 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99967 * 179.97438 * 9 7 2 11 11 C 1.53008 * 109.46998 * 180.02562 * 10 9 7 12 12 H 1.08993 * 110.02122 * 306.39617 * 11 10 9 13 13 C 1.53877 * 110.03095 * 67.83757 * 11 10 9 14 14 C 1.54463 * 106.68516 * 119.44110 * 13 11 10 15 15 C 1.54886 * 104.10320 * 23.34273 * 14 13 11 16 16 H 1.08999 * 110.75765 * 80.70597 * 15 14 13 17 17 N 1.46502 * 110.75750 * 203.89310 * 15 14 13 18 18 C 1.34768 * 120.00193 * 271.06033 * 17 15 14 19 19 O 1.21569 * 120.00079 * 0.02562 * 18 17 15 20 20 C 1.47788 * 120.00425 * 179.97438 * 18 17 15 21 21 C 1.39622 * 120.12245 * 179.97438 * 20 18 17 22 22 C 1.37896 * 119.91681 * 179.70105 * 21 20 18 23 23 C 1.38481 * 120.15979 * 0.26470 * 22 21 20 24 24 Cl 1.73601 * 119.88213 * 180.02562 * 23 22 21 25 25 C 1.38698 * 120.24267 * 0.02562 * 23 22 21 26 26 F 1.35105 * 119.96220 * 180.02562 * 25 23 22 27 27 C 1.38137 * 120.08098 * 359.97438 * 25 23 22 28 28 C 1.54270 * 110.03151 * 185.00083 * 11 10 9 29 29 H 0.97008 * 119.99885 * 0.02562 * 1 2 3 30 30 H 0.97009 * 119.99767 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47311 * 60.00367 * 10 9 7 32 32 H 1.08994 * 109.47374 * 300.00169 * 10 9 7 33 33 H 1.08995 * 110.03134 * 238.57258 * 13 11 10 34 34 H 1.09006 * 110.03211 * 359.94751 * 13 11 10 35 35 H 1.09000 * 110.40303 * 264.75610 * 14 13 11 36 36 H 1.09001 * 110.65846 * 142.05189 * 14 13 11 37 37 H 0.97007 * 119.99451 * 91.06553 * 17 15 14 38 38 H 1.08002 * 120.04496 * 359.97438 * 21 20 18 39 39 H 1.07994 * 119.92179 * 180.27726 * 22 21 20 40 40 H 1.08006 * 120.08012 * 180.02562 * 27 25 23 41 41 H 1.09001 * 110.48466 * 98.42791 * 28 11 10 42 42 H 1.09005 * 110.48381 * 335.78545 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0636 -4.8197 0.0022 12 1 0.3596 -4.7083 0.8268 13 6 0.3061 -4.8662 -1.3363 14 6 0.6220 -6.2356 -1.9774 15 6 1.0212 -7.1306 -0.7781 16 1 0.1361 -7.5025 -0.2621 17 7 1.8681 -8.2419 -1.2188 18 6 1.3065 -9.4013 -1.6147 19 8 0.0971 -9.5248 -1.6066 20 6 2.1606 -10.5221 -2.0598 21 6 1.5814 -11.7245 -2.4700 22 6 2.3822 -12.7655 -2.8904 23 6 3.7596 -12.6230 -2.9014 24 17 4.7609 -13.9380 -3.4327 25 6 4.3423 -11.4337 -2.4896 26 9 5.6867 -11.3007 -2.5032 27 6 3.5496 -10.3844 -2.0666 28 6 1.8177 -6.1596 0.1286 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0016 31 1 2.6853 -3.7142 0.8911 32 1 2.6839 -3.7149 -0.8888 33 1 -0.7662 -4.7776 -1.1618 34 1 0.6462 -4.0597 -1.9861 35 1 1.4518 -6.1446 -2.6784 36 1 -0.2587 -6.6384 -2.4775 37 1 2.8331 -8.1432 -1.2255 38 1 0.5074 -11.8377 -2.4623 39 1 1.9341 -13.6939 -3.2119 40 1 4.0034 -9.4581 -1.7463 41 1 1.8074 -6.5072 1.1617 42 1 2.8418 -6.0563 -0.2300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486213232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:45 Heat of formation + Delta-G solvation = -81.068176 kcal Electronic energy + Delta-G solvation = -25776.640927 eV Core-core repulsion = 21695.745959 eV Total energy + Delta-G solvation = -4080.894968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.11055 -41.48343 -39.92683 -38.98112 -37.63140 -36.47261 -34.99218 -33.12662 -32.17614 -31.68059 -30.09634 -28.96987 -26.32664 -25.18258 -24.05259 -23.89979 -22.03212 -21.70769 -20.49793 -19.52809 -19.05790 -18.13478 -17.67071 -17.30771 -17.16437 -16.95068 -16.67592 -16.50830 -15.92914 -15.67221 -15.30075 -15.13749 -14.85754 -14.59320 -14.45453 -14.23817 -14.07028 -13.42248 -13.37122 -13.30553 -13.01400 -12.91734 -12.79526 -12.66850 -12.46612 -12.16781 -12.09278 -12.08676 -11.83668 -11.70360 -11.51368 -11.26941 -11.17765 -10.90275 -10.29784 -10.13440 -9.87478 -8.96740 -7.93702 -5.21844 -0.66180 -0.10721 0.80969 1.47800 1.49440 1.52276 1.57840 1.96745 2.46990 2.57272 2.82385 3.35935 3.39868 3.48914 3.61271 3.70428 3.83460 3.85897 3.96316 4.22038 4.29497 4.37815 4.46475 4.47329 4.52245 4.60944 4.68924 4.75141 4.80577 4.82796 4.93749 5.00587 5.03453 5.13791 5.18452 5.25949 5.39657 5.42705 5.47928 5.53092 5.58201 6.28937 6.42881 7.07950 7.35097 8.13392 8.35402 9.29910 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024074 B = 0.001790 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.797800 B =15641.734570 C =16514.350228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.244 4.244 8 H 0.076 0.924 9 N -0.746 5.746 10 C 0.159 3.841 11 C -0.089 4.089 12 H 0.065 0.935 13 C -0.112 4.112 14 C -0.123 4.123 15 C 0.147 3.853 16 H 0.088 0.912 17 N -0.701 5.701 18 C 0.560 3.440 19 O -0.566 6.566 20 C -0.107 4.107 21 C -0.058 4.058 22 C -0.080 4.080 23 C -0.058 4.058 24 Cl -0.043 7.043 25 C 0.092 3.908 26 F -0.129 7.129 27 C -0.101 4.101 28 C -0.108 4.108 29 H 0.250 0.750 30 H 0.374 0.626 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.415 0.585 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.171 0.829 41 H 0.087 0.913 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.389 -31.253 -5.801 32.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.802 3.198 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.376 4.376 8 H 0.094 0.906 9 N -0.388 5.388 10 C 0.033 3.967 11 C -0.109 4.109 12 H 0.084 0.916 13 C -0.151 4.151 14 C -0.161 4.161 15 C 0.043 3.957 16 H 0.106 0.894 17 N -0.353 5.353 18 C 0.347 3.653 19 O -0.446 6.446 20 C -0.111 4.111 21 C -0.077 4.077 22 C -0.098 4.098 23 C -0.086 4.086 24 Cl -0.014 7.014 25 C 0.072 3.928 26 F -0.108 7.108 27 C -0.120 4.120 28 C -0.146 4.146 29 H 0.059 0.941 30 H 0.205 0.795 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.253 0.747 38 H 0.175 0.825 39 H 0.194 0.806 40 H 0.188 0.812 41 H 0.105 0.895 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.867 -31.335 -5.817 32.827 hybrid contribution 0.587 1.308 -0.088 1.436 sum 8.454 -30.027 -5.905 31.748 Atomic orbital electron populations 1.69821 1.06616 1.25980 1.59664 1.25576 0.96405 1.01140 1.03921 0.85142 0.77726 0.79524 0.77385 1.21486 1.22306 1.19356 1.19655 0.91527 0.85467 1.40918 0.90609 1.42602 1.05672 1.01260 1.89288 1.20922 0.93676 0.84554 0.97569 1.21763 0.97110 0.94300 0.97688 0.91605 1.22065 0.99759 0.96957 0.96283 1.22678 1.01602 0.94159 0.97709 1.21895 0.93980 0.85198 0.94666 0.89412 1.45829 1.11271 1.12570 1.65600 1.18304 0.87326 0.82690 0.76942 1.90805 1.15570 1.82886 1.55307 1.19814 0.92580 0.95353 1.03335 1.21481 1.02045 0.90346 0.93816 1.21220 0.89398 1.01096 0.98120 1.21469 0.93560 0.89797 1.03806 1.98418 1.68865 1.45848 1.88270 1.17332 0.77829 0.94198 1.03450 1.91569 1.28808 1.96144 1.94249 1.21418 0.92235 0.99274 0.99122 1.22520 0.99587 0.92058 1.00433 0.94093 0.79472 0.96103 0.95950 0.92629 0.92954 0.90682 0.91960 0.74706 0.82491 0.80645 0.81185 0.89461 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.66 13.06 21.65 0.28 -59.37 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 3 Si 0.97 46.13 29.55 68.60 2.03 48.15 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.24 -13.57 9.99 84.04 0.84 -12.73 16 8 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.75 -37.50 5.39 -343.46 -1.85 -39.36 16 10 C 0.16 6.02 5.27 86.38 0.46 6.47 16 11 C -0.09 -2.64 2.96 -10.06 -0.03 -2.67 16 12 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 13 C -0.11 -3.37 6.19 31.39 0.19 -3.18 16 14 C -0.12 -2.93 6.53 31.74 0.21 -2.72 16 15 C 0.15 3.02 3.21 46.28 0.15 3.17 16 16 H 0.09 2.06 7.62 -2.39 -0.02 2.04 16 17 N -0.70 -11.15 5.14 -439.35 -2.26 -13.41 16 18 C 0.56 10.68 7.77 86.77 0.67 11.35 16 19 O -0.57 -15.15 16.03 -3.93 -0.06 -15.21 16 20 C -0.11 -1.51 5.87 -20.09 -0.12 -1.63 16 21 C -0.06 -0.70 9.59 22.52 0.22 -0.48 16 22 C -0.08 -0.76 9.81 22.25 0.22 -0.54 16 23 C -0.06 -0.72 6.33 22.44 0.14 -0.58 16 24 Cl -0.04 -0.54 28.60 -2.72 -0.08 -0.62 16 25 C 0.09 1.23 7.27 22.36 0.16 1.39 16 26 F -0.13 -2.02 16.83 44.97 0.76 -1.26 16 27 C -0.10 -1.14 9.52 22.57 0.21 -0.92 16 28 C -0.11 -2.18 5.98 31.67 0.19 -1.99 16 29 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 30 H 0.37 20.12 7.55 -92.70 -0.70 19.42 16 31 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.85 7.61 -2.38 -0.02 1.83 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.41 4.09 6.58 -92.70 -0.61 3.48 16 38 H 0.16 1.83 7.65 -2.91 -0.02 1.80 16 39 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 40 H 0.17 1.08 6.40 -2.91 -0.02 1.06 16 41 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 1.56 7.73 -2.38 -0.02 1.54 16 Total: -1.00 -69.99 370.04 2.56 -67.43 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: -0.24 Total: 22.75 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 3.98 Total: -9.10 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -3.83 Total: -112.14 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.06 Total: -15.21 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.76 Total: -1.26 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -69.99 2.56 -67.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486213232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.637 kcal (2) G-P(sol) polarization free energy of solvation -69.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds