Wall clock time and date at job start Sat Apr 11 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48498 * 109.47347 * 239.99791 * 3 2 1 5 5 H 1.48503 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47435 * 119.99324 * 3 2 1 7 7 C 1.38812 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00087 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99741 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46650 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.91444 * 302.55309 * 11 10 9 13 13 C 1.55151 * 111.00440 * 66.45922 * 11 10 9 14 14 C 1.54320 * 102.94761 * 153.57368 * 13 11 10 15 15 N 1.47025 * 107.26890 * 337.80890 * 14 13 11 16 16 C 1.34774 * 125.64938 * 178.90075 * 15 14 13 17 17 O 1.21283 * 119.99678 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.99934 * 0.02568 * 16 15 14 19 19 C 1.50697 * 109.46957 * 179.97438 * 18 16 15 20 20 C 1.38271 * 119.97280 * 270.25430 * 19 18 16 21 21 C 1.38192 * 120.05058 * 180.25487 * 20 19 18 22 22 C 1.38446 * 119.98442 * 359.74462 * 21 20 19 23 23 F 1.35104 * 120.02612 * 179.97438 * 22 21 20 24 24 C 1.38546 * 119.94447 * 0.02562 * 22 21 20 25 25 Cl 1.73591 * 120.02674 * 180.02562 * 24 22 21 26 26 C 1.38215 * 119.96826 * 89.99614 * 19 18 16 27 27 C 1.47431 * 108.70205 * 359.16470 * 15 14 13 28 28 H 0.96998 * 120.00013 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99543 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.47171 * 60.00485 * 10 9 7 31 31 H 1.08998 * 109.47539 * 300.00041 * 10 9 7 32 32 H 1.09005 * 110.72625 * 35.20645 * 13 11 10 33 33 H 1.09008 * 110.72043 * 271.93637 * 13 11 10 34 34 H 1.08994 * 109.88745 * 218.38668 * 14 13 11 35 35 H 1.09004 * 109.88234 * 97.21773 * 14 13 11 36 36 H 1.09002 * 109.47178 * 59.99472 * 18 16 15 37 37 H 1.08994 * 109.46759 * 299.99673 * 18 16 15 38 38 H 1.08004 * 119.97268 * 0.02562 * 20 19 18 39 39 H 1.07994 * 120.00792 * 179.76274 * 21 20 19 40 40 H 1.08002 * 119.99636 * 0.02802 * 26 19 18 41 41 H 1.09001 * 110.36646 * 142.73996 * 27 15 14 42 42 H 1.09003 * 110.36609 * 265.06561 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 1 0.3948 -4.7592 0.8596 13 6 0.2621 -4.8668 -1.3264 14 6 -0.1206 -6.3569 -1.4466 15 7 0.8345 -7.1201 -0.6299 16 6 0.8266 -8.4564 -0.4553 17 8 1.6669 -8.9816 0.2441 18 6 -0.2263 -9.2981 -1.1291 19 6 -0.0134 -10.7473 -0.7749 20 6 0.8014 -11.5386 -1.5635 21 6 0.9936 -12.8691 -1.2432 22 6 0.3741 -13.4090 -0.1290 23 9 0.5610 -14.7098 0.1847 24 6 -0.4384 -12.6145 0.6636 25 17 -1.2157 -13.2891 2.0615 26 6 -0.6286 -11.2829 0.3409 27 6 1.7985 -6.1807 -0.0284 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6846 -3.7145 0.8905 31 1 2.6847 -3.7146 -0.8894 32 1 0.8869 -4.5602 -2.1653 33 1 -0.6299 -4.2436 -1.2606 34 1 -0.0546 -6.6739 -2.4873 35 1 -1.1331 -6.5109 -1.0735 36 1 -0.1541 -9.1741 -2.2096 37 1 -1.2138 -8.9827 -0.7924 38 1 1.2850 -11.1175 -2.4325 39 1 1.6270 -13.4875 -1.8617 40 1 -1.2618 -10.6630 0.9582 41 1 2.0548 -6.4960 0.9831 42 1 2.6955 -6.1116 -0.6439 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491839239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:05 Heat of formation + Delta-G solvation = -52.668848 kcal Electronic energy + Delta-G solvation = -25782.625353 eV Core-core repulsion = 21702.961873 eV Total energy + Delta-G solvation = -4079.663481 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.30720 -40.48780 -39.37393 -37.66585 -36.89504 -34.73838 -33.10606 -32.17833 -31.38450 -30.28674 -29.24721 -27.80545 -25.27002 -23.63052 -23.27961 -22.49305 -22.04379 -20.08341 -19.33050 -18.17338 -17.38341 -17.20740 -17.01144 -16.60975 -16.10573 -16.03247 -15.43266 -14.84622 -14.55758 -14.45943 -14.29380 -13.90438 -13.72673 -13.56264 -13.32755 -13.15579 -12.85551 -12.73777 -12.57776 -12.42613 -12.20338 -11.81399 -11.74722 -11.69283 -11.31185 -11.23211 -10.88116 -10.72558 -10.55736 -10.43986 -10.13639 -10.00458 -9.73312 -9.40048 -8.97553 -8.91659 -8.71389 -6.97486 -5.81155 -3.09912 0.52651 0.65651 1.62234 2.47817 2.74361 3.13349 3.41629 3.46279 3.46996 3.67747 4.09756 4.19653 4.35633 4.55400 4.57801 4.65761 4.68033 4.83340 4.87432 5.03637 5.06440 5.21914 5.24952 5.35660 5.44061 5.46968 5.52214 5.58740 5.63044 5.83330 5.92198 5.96946 5.98021 6.06889 6.13423 6.24838 6.33686 6.37939 6.66922 6.78889 7.41623 7.65879 8.01849 8.37817 9.49258 10.05729 10.40638 11.41628 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.031125 B = 0.001733 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.386612 B =16149.692027 C =16404.980234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.731 5.731 10 C 0.164 3.836 11 C -0.106 4.106 12 H 0.084 0.916 13 C -0.121 4.121 14 C 0.097 3.903 15 N -0.616 5.616 16 C 0.527 3.473 17 O -0.536 6.536 18 C -0.099 4.099 19 C -0.061 4.061 20 C -0.070 4.070 21 C -0.140 4.140 22 C 0.107 3.893 23 F -0.128 7.128 24 C -0.072 4.072 25 Cl -0.051 7.051 26 C -0.067 4.067 27 C 0.113 3.887 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.077 0.923 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 -26.691 -4.976 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.125 4.125 12 H 0.102 0.898 13 C -0.159 4.159 14 C -0.026 4.026 15 N -0.350 5.350 16 C 0.315 3.685 17 O -0.413 6.413 18 C -0.138 4.138 19 C -0.062 4.062 20 C -0.088 4.088 21 C -0.159 4.159 22 C 0.087 3.913 23 F -0.107 7.107 24 C -0.099 4.099 25 Cl -0.022 7.022 26 C -0.086 4.086 27 C -0.010 4.010 28 H 0.066 0.934 29 H 0.218 0.782 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.096 0.904 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.350 -27.046 -4.454 27.614 hybrid contribution 0.070 0.748 0.193 0.776 sum -3.279 -26.298 -4.261 26.842 Atomic orbital electron populations 1.69639 1.05101 1.25818 1.57686 1.24736 0.95546 0.97713 1.02946 0.86256 0.78519 0.83453 0.77876 1.21265 1.21689 1.21252 1.19181 0.91037 0.84110 1.42850 0.91209 1.42288 1.05838 0.99790 1.89580 1.20542 0.92747 0.84894 0.98191 1.22529 0.98138 0.93715 0.98158 0.89783 1.22642 1.01687 0.93047 0.98481 1.22197 0.92687 0.92919 0.94806 1.48565 1.31741 1.05516 1.49195 1.20038 0.85934 0.80867 0.81649 1.90747 1.39660 1.71491 1.39418 1.20664 0.99910 0.90460 1.02802 1.19304 0.97321 0.94697 0.94900 1.20979 0.95907 0.92417 0.99540 1.21089 1.01573 0.96598 0.96613 1.17418 0.99088 0.78929 0.95907 1.91540 1.93693 1.32941 1.92513 1.20915 1.01363 0.94683 0.92952 1.98393 1.79284 1.85146 1.39367 1.20819 0.99313 0.92181 0.96288 1.22228 0.91914 0.87845 0.98964 0.93447 0.78234 0.96015 0.95974 0.90129 0.89381 0.91389 0.91343 0.87319 0.87394 0.84321 0.83654 0.83985 0.90435 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.40 13.06 55.49 0.72 -26.68 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.73 -17.53 5.45 -59.91 -0.33 -17.86 16 10 C 0.16 3.07 5.71 -4.04 -0.02 3.05 16 11 C -0.11 -1.54 3.09 -88.59 -0.27 -1.81 16 12 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 13 C -0.12 -1.51 6.13 -24.90 -0.15 -1.67 16 14 C 0.10 0.91 6.49 -3.06 -0.02 0.89 16 15 N -0.62 -7.09 3.33 -170.65 -0.57 -7.65 16 16 C 0.53 6.13 7.84 -10.99 -0.09 6.05 16 17 O -0.54 -8.38 16.29 5.55 0.09 -8.29 16 18 C -0.10 -0.73 5.02 -29.04 -0.15 -0.87 16 19 C -0.06 -0.52 4.37 -104.62 -0.46 -0.98 16 20 C -0.07 -0.54 9.70 -39.59 -0.38 -0.92 16 21 C -0.14 -1.11 10.03 -39.52 -0.40 -1.51 16 22 C 0.11 1.04 7.28 -39.39 -0.29 0.75 16 23 F -0.13 -1.34 16.84 2.25 0.04 -1.30 16 24 C -0.07 -0.71 6.33 -39.44 -0.25 -0.96 16 25 Cl -0.05 -0.50 28.62 -51.86 -1.48 -1.98 16 26 C -0.07 -0.61 9.48 -39.56 -0.38 -0.99 16 27 C 0.11 1.49 6.37 -2.64 -0.02 1.47 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.38 9.58 7.53 -40.82 -0.31 9.27 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.42 8.11 -51.93 -0.42 0.00 16 32 H 0.08 1.07 8.01 -51.93 -0.42 0.65 16 33 H 0.09 1.17 8.14 -51.92 -0.42 0.74 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.11 0.54 8.09 -51.93 -0.42 0.12 16 37 H 0.11 0.59 8.08 -51.93 -0.42 0.17 16 38 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 42 H 0.07 0.92 8.03 -51.93 -0.42 0.50 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -32.57 374.70 -9.76 -42.33 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.75 Total: 3.50 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -3.11 Total: -4.65 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.17 Total: -52.19 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.29 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.57 -9.76 -42.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491839239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.336 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds