Wall clock time and date at job start Sat Apr 11 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86794 * 120.00184 * 2 1 4 4 H 1.48498 * 109.47347 * 239.99791 * 3 2 1 5 5 H 1.48503 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47435 * 119.99324 * 3 2 1 7 7 C 1.38812 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00087 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00092 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99741 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46650 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.91444 * 302.55309 * 11 10 9 13 13 C 1.55151 * 111.00440 * 66.45922 * 11 10 9 14 14 C 1.54320 * 102.94761 * 153.57368 * 13 11 10 15 15 N 1.47025 * 107.26890 * 337.80890 * 14 13 11 16 16 C 1.34774 * 125.64938 * 178.90075 * 15 14 13 17 17 O 1.21283 * 119.99678 * 180.02562 * 16 15 14 18 18 C 1.50701 * 119.99934 * 0.02568 * 16 15 14 19 19 C 1.50697 * 109.46957 * 179.97438 * 18 16 15 20 20 C 1.38271 * 119.97280 * 270.25430 * 19 18 16 21 21 C 1.38192 * 120.05058 * 180.25487 * 20 19 18 22 22 C 1.38446 * 119.98442 * 359.74462 * 21 20 19 23 23 F 1.35104 * 120.02612 * 179.97438 * 22 21 20 24 24 C 1.38546 * 119.94447 * 0.02562 * 22 21 20 25 25 Cl 1.73591 * 120.02674 * 180.02562 * 24 22 21 26 26 C 1.38215 * 119.96826 * 89.99614 * 19 18 16 27 27 C 1.47431 * 108.70205 * 359.16470 * 15 14 13 28 28 H 0.96998 * 120.00013 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99543 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.47171 * 60.00485 * 10 9 7 31 31 H 1.08998 * 109.47539 * 300.00041 * 10 9 7 32 32 H 1.09005 * 110.72625 * 35.20645 * 13 11 10 33 33 H 1.09008 * 110.72043 * 271.93637 * 13 11 10 34 34 H 1.08994 * 109.88745 * 218.38668 * 14 13 11 35 35 H 1.09004 * 109.88234 * 97.21773 * 14 13 11 36 36 H 1.09002 * 109.47178 * 59.99472 * 18 16 15 37 37 H 1.08994 * 109.46759 * 299.99673 * 18 16 15 38 38 H 1.08004 * 119.97268 * 0.02562 * 20 19 18 39 39 H 1.07994 * 120.00792 * 179.76274 * 21 20 19 40 40 H 1.08002 * 119.99636 * 0.02802 * 26 19 18 41 41 H 1.09001 * 110.36646 * 142.73996 * 27 15 14 42 42 H 1.09003 * 110.36609 * 265.06561 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0637 -4.8197 0.0012 12 1 0.3948 -4.7592 0.8596 13 6 0.2621 -4.8668 -1.3264 14 6 -0.1206 -6.3569 -1.4466 15 7 0.8345 -7.1201 -0.6299 16 6 0.8266 -8.4564 -0.4553 17 8 1.6669 -8.9816 0.2441 18 6 -0.2263 -9.2981 -1.1291 19 6 -0.0134 -10.7473 -0.7749 20 6 0.8014 -11.5386 -1.5635 21 6 0.9936 -12.8691 -1.2432 22 6 0.3741 -13.4090 -0.1290 23 9 0.5610 -14.7098 0.1847 24 6 -0.4384 -12.6145 0.6636 25 17 -1.2157 -13.2891 2.0615 26 6 -0.6286 -11.2829 0.3409 27 6 1.7985 -6.1807 -0.0284 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6846 -3.7145 0.8905 31 1 2.6847 -3.7146 -0.8894 32 1 0.8869 -4.5602 -2.1653 33 1 -0.6299 -4.2436 -1.2606 34 1 -0.0546 -6.6739 -2.4873 35 1 -1.1331 -6.5109 -1.0735 36 1 -0.1541 -9.1741 -2.2096 37 1 -1.2138 -8.9827 -0.7924 38 1 1.2850 -11.1175 -2.4325 39 1 1.6270 -13.4875 -1.8617 40 1 -1.2618 -10.6630 0.9582 41 1 2.0548 -6.4960 0.9831 42 1 2.6955 -6.1116 -0.6439 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491839239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:04 Heat of formation + Delta-G solvation = -71.265843 kcal Electronic energy + Delta-G solvation = -25783.431780 eV Core-core repulsion = 21702.961873 eV Total energy + Delta-G solvation = -4080.469907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.04003 -41.32352 -40.12948 -38.70778 -37.61968 -36.40715 -34.08904 -33.48992 -32.01494 -31.77949 -30.28745 -28.68262 -26.79370 -24.56919 -24.23814 -23.88277 -22.80314 -21.31938 -20.18356 -19.14319 -18.85505 -18.13676 -17.86084 -17.49266 -16.93300 -16.83003 -16.51766 -16.22449 -15.68094 -15.34581 -15.17790 -14.99344 -14.91405 -14.73639 -14.51786 -14.10896 -13.92810 -13.84985 -13.64867 -13.16125 -12.99915 -12.92411 -12.86765 -12.70546 -12.48605 -12.35158 -12.23506 -12.11394 -11.99962 -11.74582 -11.65687 -11.56327 -10.97944 -10.90451 -10.03513 -9.64959 -9.63340 -8.97575 -7.93650 -5.21644 -0.13250 0.03744 0.92542 1.49522 1.51650 1.57715 1.63488 1.93547 2.44485 2.57774 3.02491 3.39348 3.44901 3.49410 3.62913 3.70223 3.85218 3.93936 4.04096 4.10207 4.28296 4.34577 4.37986 4.47354 4.57074 4.61702 4.64484 4.67927 4.81791 4.85192 4.86211 4.91730 5.03401 5.05479 5.12191 5.27228 5.30730 5.33513 5.44724 5.51853 5.65013 6.28903 6.55955 7.15009 7.36193 8.11274 8.35710 9.29366 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.031125 B = 0.001733 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.386612 B =16149.692027 C =16404.980234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.073 4.073 3 Si 0.971 3.029 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.741 5.741 10 C 0.164 3.836 11 C -0.098 4.098 12 H 0.075 0.925 13 C -0.119 4.119 14 C 0.103 3.897 15 N -0.616 5.616 16 C 0.525 3.475 17 O -0.583 6.583 18 C -0.090 4.090 19 C -0.068 4.068 20 C -0.070 4.070 21 C -0.139 4.139 22 C 0.086 3.914 23 F -0.138 7.138 24 C -0.087 4.087 25 Cl -0.060 7.060 26 C -0.077 4.077 27 C 0.120 3.880 28 H 0.252 0.748 29 H 0.377 0.623 30 H 0.015 0.985 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.150 0.850 41 H 0.064 0.936 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 -27.152 -6.759 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.091 0.909 9 N -0.384 5.384 10 C 0.037 3.963 11 C -0.118 4.118 12 H 0.093 0.907 13 C -0.157 4.157 14 C -0.018 4.018 15 N -0.350 5.350 16 C 0.315 3.685 17 O -0.463 6.463 18 C -0.128 4.128 19 C -0.069 4.069 20 C -0.088 4.088 21 C -0.157 4.157 22 C 0.066 3.934 23 F -0.117 7.117 24 C -0.115 4.115 25 Cl -0.031 7.031 26 C -0.095 4.095 27 C -0.004 4.004 28 H 0.060 0.940 29 H 0.209 0.791 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.161 0.839 37 H 0.150 0.850 38 H 0.183 0.817 39 H 0.185 0.815 40 H 0.167 0.833 41 H 0.082 0.918 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.387 -27.530 -6.252 28.434 hybrid contribution 0.149 0.865 0.755 1.158 sum -3.238 -26.665 -5.497 27.418 Atomic orbital electron populations 1.69783 1.06408 1.26133 1.59345 1.25512 0.96418 1.00907 1.03708 0.85252 0.77242 0.79389 0.78102 1.20363 1.22134 1.20736 1.19571 0.91464 0.85423 1.41380 0.90890 1.42452 1.05704 1.00805 1.89399 1.20650 0.93455 0.84456 0.97769 1.22306 0.97390 0.92810 0.99272 0.90684 1.22583 1.00764 0.95630 0.96691 1.22292 0.93046 0.90028 0.96454 1.48624 1.31596 1.05611 1.49138 1.20790 0.86067 0.80701 0.80918 1.90735 1.41787 1.72237 1.41576 1.20741 0.99229 0.88511 1.04363 1.19538 0.97167 0.95508 0.94654 1.21347 0.95220 0.92139 1.00071 1.21395 1.01148 0.97164 0.96018 1.17721 1.00014 0.78740 0.96908 1.91509 1.93857 1.33587 1.92717 1.21094 1.02012 0.95299 0.93061 1.98381 1.79478 1.85333 1.39896 1.21014 0.99751 0.91941 0.96833 1.21990 0.92358 0.87450 0.98591 0.93973 0.79082 0.96689 0.95537 0.90804 0.90257 0.88136 0.88989 0.83881 0.84958 0.81738 0.81517 0.83252 0.91783 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.19 13.06 21.65 0.28 -56.91 16 2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 3 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.25 -13.39 9.99 84.03 0.84 -12.55 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.74 -35.74 5.45 -343.44 -1.87 -37.61 16 10 C 0.16 6.11 5.71 86.38 0.49 6.60 16 11 C -0.10 -2.79 3.09 -9.48 -0.03 -2.82 16 12 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 13 C -0.12 -2.77 6.13 31.78 0.19 -2.57 16 14 C 0.10 1.56 6.49 86.73 0.56 2.12 16 15 N -0.62 -12.53 3.33 -812.21 -2.70 -15.24 16 16 C 0.52 10.81 7.84 87.66 0.69 11.50 16 17 O -0.58 -17.51 16.29 -3.04 -0.05 -17.56 16 18 C -0.09 -0.95 5.02 29.10 0.15 -0.81 16 19 C -0.07 -0.97 4.37 -19.86 -0.09 -1.06 16 20 C -0.07 -0.88 9.70 22.27 0.22 -0.66 16 21 C -0.14 -1.95 10.03 22.31 0.22 -1.72 16 22 C 0.09 1.63 7.28 22.39 0.16 1.79 16 23 F -0.14 -2.88 16.84 44.97 0.76 -2.12 16 24 C -0.09 -1.69 6.33 22.36 0.14 -1.55 16 25 Cl -0.06 -1.18 28.62 -2.72 -0.08 -1.26 16 26 C -0.08 -1.29 9.48 22.29 0.21 -1.08 16 27 C 0.12 3.03 6.37 86.78 0.55 3.59 16 28 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.38 19.04 7.53 -92.71 -0.70 18.34 16 30 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.03 0.98 8.11 -2.39 -0.02 0.96 16 32 H 0.07 1.83 8.01 -2.38 -0.02 1.81 16 33 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.14 0.59 8.09 -2.39 -0.02 0.57 16 37 H 0.13 0.82 8.08 -2.39 -0.02 0.80 16 38 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.06 1.79 8.04 -2.39 -0.02 1.78 16 42 H 0.07 1.79 8.03 -2.39 -0.02 1.77 16 Total: -1.00 -71.61 374.70 3.49 -68.12 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.35 Total: 18.29 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 4.78 Total: -2.84 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -4.29 Total: -109.76 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.05 Total: -17.56 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.76 Total: -2.12 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -71.61 3.49 -68.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491839239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.146 kcal (2) G-P(sol) polarization free energy of solvation -71.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds