Wall clock time and date at job start Sat Apr 11 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.63935 * 2 1 4 4 N 1.46497 * 109.46989 * 298.30358 * 3 2 1 5 5 C 1.36940 * 119.99896 * 180.02562 * 4 3 2 6 6 H 1.07994 * 119.99704 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99803 * 180.02562 * 5 4 3 8 8 N 1.31619 * 120.00088 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99829 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46737 * 89.99711 * 9 7 5 11 11 H 1.48500 * 109.47174 * 209.99811 * 9 7 5 12 12 H 1.48497 * 109.46957 * 329.99908 * 9 7 5 13 13 C 1.55160 * 110.86781 * 123.24200 * 2 1 3 14 14 C 1.55128 * 101.48428 * 82.76801 * 13 2 1 15 15 N 1.47430 * 104.71996 * 37.29383 * 14 13 2 16 16 C 1.34785 * 125.64466 * 155.82170 * 15 14 13 17 17 O 1.21568 * 119.99855 * 354.01378 * 16 15 14 18 18 C 1.47692 * 119.99719 * 174.29978 * 16 15 14 19 19 C 1.39658 * 120.16039 * 6.62879 * 18 16 15 20 20 C 1.37966 * 119.86209 * 180.02562 * 19 18 16 21 21 Cl 1.73596 * 119.90426 * 180.02562 * 20 19 18 22 22 C 1.38566 * 120.19336 * 359.97438 * 20 19 18 23 23 C 1.38191 * 120.32399 * 0.02562 * 22 20 19 24 24 C 1.38318 * 120.13607 * 359.71634 * 23 22 20 25 25 F 1.35091 * 120.10019 * 180.27624 * 24 23 22 26 26 C 1.47016 * 108.70539 * 335.55103 * 15 14 13 27 27 H 1.09002 * 109.47354 * 181.69047 * 1 2 3 28 28 H 1.09001 * 109.47049 * 301.69341 * 1 2 3 29 29 H 1.08999 * 109.47049 * 61.68873 * 1 2 3 30 30 H 1.08999 * 109.47403 * 58.30966 * 3 2 1 31 31 H 1.09006 * 109.46871 * 178.30815 * 3 2 1 32 32 H 0.97006 * 120.00081 * 0.02562 * 4 3 2 33 33 H 0.96996 * 119.99998 * 180.02562 * 8 7 5 34 34 H 1.09002 * 111.00419 * 201.00439 * 13 2 1 35 35 H 1.08996 * 111.00518 * 324.82647 * 13 2 1 36 36 H 1.09001 * 110.49941 * 278.45310 * 14 13 2 37 37 H 1.09002 * 110.34578 * 156.05681 * 14 13 2 38 38 H 1.08001 * 120.06747 * 0.03186 * 19 18 16 39 39 H 1.08001 * 119.83315 * 180.02562 * 22 20 19 40 40 H 1.08006 * 119.93023 * 179.97438 * 23 22 20 41 41 H 1.08995 * 109.88281 * 120.70537 * 26 15 14 42 42 H 1.08994 * 109.88622 * 241.71926 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 7 1.6286 2.1196 -1.2161 5 6 1.9926 3.4212 -1.4366 6 1 2.6049 3.9404 -0.7143 7 6 1.5745 4.0731 -2.5887 8 7 0.8279 3.4403 -3.4688 9 14 2.0716 5.8484 -2.8899 10 1 3.3560 5.8832 -3.6344 11 1 1.0191 6.5288 -3.6865 12 1 2.2349 6.5443 -1.5883 13 6 2.0827 -0.7948 1.2126 14 6 2.0139 -2.2517 0.6842 15 7 2.3756 -2.1506 -0.7414 16 6 2.8902 -3.1437 -1.4935 17 8 3.1942 -4.2018 -0.9777 18 6 3.0905 -2.9443 -2.9431 19 6 2.8794 -1.6874 -3.5142 20 6 3.0679 -1.5081 -4.8692 21 17 2.8064 0.0538 -5.5801 22 6 3.4663 -2.5710 -5.6640 23 6 3.6774 -3.8179 -5.1071 24 6 3.4976 -4.0116 -3.7494 25 9 3.7096 -5.2296 -3.2048 26 6 2.0761 -0.7892 -1.2085 27 1 -0.3634 -1.0272 0.0303 28 1 -0.3633 0.5399 0.8744 29 1 -0.3633 0.4874 -0.9047 30 1 1.6922 1.9622 0.8744 31 1 3.1588 1.4097 0.0303 32 1 1.0789 1.6530 -1.8651 33 1 0.5361 3.8957 -4.2739 34 1 3.1096 -0.5043 1.4348 35 1 1.4447 -0.6671 2.0870 36 1 1.0050 -2.6497 0.7923 37 1 2.7296 -2.8809 1.2135 38 1 2.5694 -0.8575 -2.8965 39 1 3.6125 -2.4240 -6.7239 40 1 3.9874 -4.6420 -5.7326 41 1 2.9851 -0.3163 -1.5799 42 1 1.3272 -0.8251 -1.9996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500362574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:24 Heat of formation + Delta-G solvation = -23.195205 kcal Electronic energy + Delta-G solvation = -27963.602320 eV Core-core repulsion = 23885.216912 eV Total energy + Delta-G solvation = -4078.385408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.97733 -40.70822 -38.90086 -37.93570 -36.24712 -34.82780 -33.02462 -31.99456 -30.38071 -30.35522 -29.10865 -26.85530 -25.86201 -24.50746 -23.15760 -22.90546 -21.76947 -20.05807 -19.17293 -17.70268 -17.38721 -16.99637 -16.75236 -16.21732 -15.77226 -15.65438 -15.12792 -14.79001 -14.53398 -14.17360 -13.88587 -13.69779 -13.47456 -13.30661 -13.16831 -13.02467 -12.81107 -12.67912 -12.21625 -12.05771 -11.84932 -11.73637 -11.51446 -11.19443 -11.06882 -10.87800 -10.82796 -10.60164 -10.39965 -10.37334 -10.06188 -9.82427 -9.67641 -9.44501 -8.92095 -8.78847 -8.55733 -6.97509 -5.80346 -3.09212 0.44268 0.83420 2.16493 2.62382 2.85440 3.40629 3.43473 3.46874 3.47532 3.96725 4.18053 4.39936 4.46287 4.59770 4.71920 4.81792 4.92956 4.94850 5.23854 5.27012 5.29707 5.47228 5.49854 5.56682 5.63019 5.68584 5.74055 5.76264 5.82315 5.86415 5.93375 6.02377 6.06521 6.22402 6.25919 6.31360 6.42124 6.55018 6.65211 6.73028 7.41698 7.67452 8.05652 8.37284 9.49728 10.04200 10.39351 11.41537 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010381 B = 0.004638 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.631161 B = 6035.948558 C = 8368.392066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 C 0.167 3.833 4 N -0.730 5.730 5 C -0.241 4.241 6 H 0.069 0.931 7 C -0.007 4.007 8 N -0.927 5.927 9 Si 0.901 3.099 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.283 1.283 13 C -0.123 4.123 14 C 0.109 3.891 15 N -0.608 5.608 16 C 0.576 3.424 17 O -0.532 6.532 18 C -0.160 4.160 19 C -0.084 4.084 20 C -0.057 4.057 21 Cl -0.030 7.030 22 C -0.061 4.061 23 C -0.157 4.157 24 C 0.157 3.843 25 F -0.114 7.114 26 C 0.097 3.903 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.022 0.978 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.187 0.813 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.088 0.912 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.764 -13.258 -0.022 13.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.079 4.079 3 C 0.039 3.961 4 N -0.375 5.375 5 C -0.373 4.373 6 H 0.087 0.913 7 C -0.203 4.203 8 N -0.575 5.575 9 Si 0.733 3.267 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.161 4.161 14 C -0.013 4.013 15 N -0.342 5.342 16 C 0.365 3.635 17 O -0.410 6.410 18 C -0.164 4.164 19 C -0.102 4.102 20 C -0.084 4.084 21 Cl -0.001 7.001 22 C -0.080 4.080 23 C -0.176 4.176 24 C 0.136 3.864 25 F -0.092 7.092 26 C -0.025 4.025 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.204 0.796 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.106 0.894 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.001 -13.623 0.197 13.951 hybrid contribution 0.088 0.877 -0.599 1.065 sum 3.090 -12.746 -0.402 13.122 Atomic orbital electron populations 1.21776 0.93034 1.00828 1.03448 1.21882 0.96667 0.96237 0.93068 1.20673 0.96194 0.87882 0.91377 1.42348 1.62614 1.11910 1.20631 1.19160 1.26338 0.88461 1.03298 0.91296 1.24667 1.00397 0.98020 0.97264 1.69635 1.40116 1.36301 1.11452 0.86283 0.77590 0.85172 0.77686 1.21783 1.21844 1.20835 1.22926 1.02383 0.93057 0.97766 1.22317 1.00638 0.97959 0.80411 1.48363 1.62403 1.11725 1.11661 1.17535 0.77684 0.83056 0.85244 1.90820 1.50909 1.25924 1.73304 1.19906 1.08327 0.93975 0.94218 1.22886 0.94590 0.98067 0.94694 1.21038 1.04324 0.89406 0.93676 1.98483 1.94617 1.23579 1.83385 1.21166 0.95576 0.90544 1.00680 1.21049 1.04824 0.98828 0.92887 1.17701 0.97270 0.80303 0.91134 1.91589 1.91359 1.40134 1.86141 1.22753 1.01024 0.80972 0.97760 0.93355 0.92128 0.91060 0.95537 0.96000 0.78196 0.93577 0.90202 0.89494 0.91160 0.90269 0.79635 0.83580 0.83303 0.89381 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.26 37.16 0.31 -1.53 16 2 C -0.08 -1.09 0.61 -152.67 -0.09 -1.18 16 3 C 0.17 2.95 5.07 -4.04 -0.02 2.93 16 4 N -0.73 -16.39 5.15 -59.91 -0.31 -16.70 16 5 C -0.24 -6.25 9.99 -15.06 -0.15 -6.40 16 6 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 7 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 8 N -0.93 -25.90 13.06 55.49 0.72 -25.17 16 9 Si 0.90 21.49 29.55 -169.99 -5.02 16.46 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 C -0.12 -1.41 6.04 -24.46 -0.15 -1.55 16 14 C 0.11 1.33 6.63 -2.41 -0.02 1.32 16 15 N -0.61 -8.73 3.33 -175.99 -0.59 -9.32 16 16 C 0.58 9.30 7.81 -12.40 -0.10 9.21 16 17 O -0.53 -9.94 15.60 5.31 0.08 -9.86 16 18 C -0.16 -2.36 5.88 -104.91 -0.62 -2.98 16 19 C -0.08 -1.20 8.38 -39.15 -0.33 -1.53 16 20 C -0.06 -0.77 6.31 -39.56 -0.25 -1.02 16 21 Cl -0.03 -0.45 28.95 -51.86 -1.50 -1.96 16 22 C -0.06 -0.65 9.82 -39.48 -0.39 -1.03 16 23 C -0.16 -1.66 10.01 -39.57 -0.40 -2.05 16 24 C 0.16 2.14 7.28 -38.96 -0.28 1.86 16 25 F -0.11 -1.73 15.57 2.25 0.04 -1.69 16 26 C 0.10 1.40 3.47 -3.07 -0.01 1.39 16 27 H 0.05 0.58 7.44 -51.93 -0.39 0.20 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.14 7.11 -51.93 -0.37 0.77 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 32 H 0.38 8.94 6.37 -40.82 -0.26 8.68 16 33 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 35 H 0.09 0.84 8.04 -51.93 -0.42 0.42 16 36 H 0.07 0.80 7.71 -51.93 -0.40 0.40 16 37 H 0.08 0.97 7.98 -51.93 -0.41 0.56 16 38 H 0.19 2.80 2.74 -58.24 -0.16 2.64 16 39 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.15 1.13 8.06 -52.48 -0.42 0.70 16 41 H 0.09 1.38 6.42 -51.93 -0.33 1.05 16 42 H 0.08 1.22 6.43 -51.93 -0.33 0.88 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -30.26 358.52 -8.91 -39.17 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.15 Total: 6.53 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: -2.59 Total: -2.86 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.17 Total: -51.19 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.50 Total: -1.96 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.26 -8.91 -39.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500362574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.971 kcal (2) G-P(sol) polarization free energy of solvation -30.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds