Wall clock time and date at job start Sat Apr 11 2020 05:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.63935 * 2 1 4 4 N 1.46497 * 109.46989 * 298.30358 * 3 2 1 5 5 C 1.36940 * 119.99896 * 180.02562 * 4 3 2 6 6 H 1.07994 * 119.99704 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99803 * 180.02562 * 5 4 3 8 8 N 1.31619 * 120.00088 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99829 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46737 * 89.99711 * 9 7 5 11 11 H 1.48500 * 109.47174 * 209.99811 * 9 7 5 12 12 H 1.48497 * 109.46957 * 329.99908 * 9 7 5 13 13 C 1.55160 * 110.86781 * 123.24200 * 2 1 3 14 14 C 1.55128 * 101.48428 * 82.76801 * 13 2 1 15 15 N 1.47430 * 104.71996 * 37.29383 * 14 13 2 16 16 C 1.34785 * 125.64466 * 155.82170 * 15 14 13 17 17 O 1.21568 * 119.99855 * 354.01378 * 16 15 14 18 18 C 1.47692 * 119.99719 * 174.29978 * 16 15 14 19 19 C 1.39658 * 120.16039 * 6.62879 * 18 16 15 20 20 C 1.37966 * 119.86209 * 180.02562 * 19 18 16 21 21 Cl 1.73596 * 119.90426 * 180.02562 * 20 19 18 22 22 C 1.38566 * 120.19336 * 359.97438 * 20 19 18 23 23 C 1.38191 * 120.32399 * 0.02562 * 22 20 19 24 24 C 1.38318 * 120.13607 * 359.71634 * 23 22 20 25 25 F 1.35091 * 120.10019 * 180.27624 * 24 23 22 26 26 C 1.47016 * 108.70539 * 335.55103 * 15 14 13 27 27 H 1.09002 * 109.47354 * 181.69047 * 1 2 3 28 28 H 1.09001 * 109.47049 * 301.69341 * 1 2 3 29 29 H 1.08999 * 109.47049 * 61.68873 * 1 2 3 30 30 H 1.08999 * 109.47403 * 58.30966 * 3 2 1 31 31 H 1.09006 * 109.46871 * 178.30815 * 3 2 1 32 32 H 0.97006 * 120.00081 * 0.02562 * 4 3 2 33 33 H 0.96996 * 119.99998 * 180.02562 * 8 7 5 34 34 H 1.09002 * 111.00419 * 201.00439 * 13 2 1 35 35 H 1.08996 * 111.00518 * 324.82647 * 13 2 1 36 36 H 1.09001 * 110.49941 * 278.45310 * 14 13 2 37 37 H 1.09002 * 110.34578 * 156.05681 * 14 13 2 38 38 H 1.08001 * 120.06747 * 0.03186 * 19 18 16 39 39 H 1.08001 * 119.83315 * 180.02562 * 22 20 19 40 40 H 1.08006 * 119.93023 * 179.97438 * 23 22 20 41 41 H 1.08995 * 109.88281 * 120.70537 * 26 15 14 42 42 H 1.08994 * 109.88622 * 241.71926 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 7 1.6286 2.1196 -1.2161 5 6 1.9926 3.4212 -1.4366 6 1 2.6049 3.9404 -0.7143 7 6 1.5745 4.0731 -2.5887 8 7 0.8279 3.4403 -3.4688 9 14 2.0716 5.8484 -2.8899 10 1 3.3560 5.8832 -3.6344 11 1 1.0191 6.5288 -3.6865 12 1 2.2349 6.5443 -1.5883 13 6 2.0827 -0.7948 1.2126 14 6 2.0139 -2.2517 0.6842 15 7 2.3756 -2.1506 -0.7414 16 6 2.8902 -3.1437 -1.4935 17 8 3.1942 -4.2018 -0.9777 18 6 3.0905 -2.9443 -2.9431 19 6 2.8794 -1.6874 -3.5142 20 6 3.0679 -1.5081 -4.8692 21 17 2.8064 0.0538 -5.5801 22 6 3.4663 -2.5710 -5.6640 23 6 3.6774 -3.8179 -5.1071 24 6 3.4976 -4.0116 -3.7494 25 9 3.7096 -5.2296 -3.2048 26 6 2.0761 -0.7892 -1.2085 27 1 -0.3634 -1.0272 0.0303 28 1 -0.3633 0.5399 0.8744 29 1 -0.3633 0.4874 -0.9047 30 1 1.6922 1.9622 0.8744 31 1 3.1588 1.4097 0.0303 32 1 1.0789 1.6530 -1.8651 33 1 0.5361 3.8957 -4.2739 34 1 3.1096 -0.5043 1.4348 35 1 1.4447 -0.6671 2.0870 36 1 1.0050 -2.6497 0.7923 37 1 2.7296 -2.8809 1.2135 38 1 2.5694 -0.8575 -2.8965 39 1 3.6125 -2.4240 -6.7239 40 1 3.9874 -4.6420 -5.7326 41 1 2.9851 -0.3163 -1.5799 42 1 1.3272 -0.8251 -1.9996 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500362574.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:23 Heat of formation + Delta-G solvation = -40.067420 kcal Electronic energy + Delta-G solvation = -27964.333954 eV Core-core repulsion = 23885.216912 eV Total energy + Delta-G solvation = -4079.117042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.07664 -41.86755 -39.97054 -39.17943 -37.37453 -36.42788 -34.45951 -33.25942 -31.92496 -31.41516 -30.26863 -28.02448 -27.38135 -25.81948 -24.51546 -24.06289 -22.99565 -21.20406 -20.43129 -19.15576 -18.55070 -18.40327 -17.84435 -17.35057 -16.94740 -16.75377 -16.55472 -16.24606 -15.72682 -15.59858 -15.28302 -14.84906 -14.79582 -14.61049 -14.45355 -14.28334 -13.94462 -13.71564 -13.51907 -13.30251 -13.11450 -12.86871 -12.81632 -12.71154 -12.59211 -12.31265 -12.12508 -12.01703 -11.92474 -11.68643 -11.51132 -11.32427 -11.07324 -10.84226 -10.44404 -9.93196 -9.66369 -8.87878 -7.84824 -5.11433 -0.60177 -0.17657 1.07602 1.49856 1.50853 1.52323 1.58903 1.72808 2.35233 2.61528 2.94358 3.06820 3.32939 3.46520 3.49887 3.70163 3.77115 3.85772 3.91071 4.12645 4.24284 4.29038 4.32977 4.37435 4.49247 4.54664 4.65225 4.72251 4.74667 4.79752 4.84693 4.95780 4.99004 5.08664 5.09817 5.17431 5.23135 5.28834 5.44171 5.50498 5.60635 6.21589 6.35985 6.84208 7.45141 8.18957 8.43747 9.36824 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010381 B = 0.004638 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.631161 B = 6035.948558 C = 8368.392066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.072 4.072 3 C 0.167 3.833 4 N -0.737 5.737 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.060 4.060 8 N -0.953 5.953 9 Si 0.955 3.045 10 H -0.292 1.292 11 H -0.299 1.299 12 H -0.274 1.274 13 C -0.109 4.109 14 C 0.104 3.896 15 N -0.605 5.605 16 C 0.570 3.430 17 O -0.564 6.564 18 C -0.177 4.177 19 C -0.092 4.092 20 C -0.066 4.066 21 Cl -0.051 7.051 22 C -0.044 4.044 23 C -0.136 4.136 24 C 0.142 3.858 25 F -0.125 7.125 26 C 0.106 3.894 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.032 0.968 31 H 0.021 0.979 32 H 0.378 0.622 33 H 0.248 0.752 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.174 0.826 39 H 0.181 0.819 40 H 0.188 0.812 41 H 0.073 0.927 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.152 -14.011 0.135 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.072 4.072 3 C 0.040 3.960 4 N -0.381 5.381 5 C -0.373 4.373 6 H 0.089 0.911 7 C -0.254 4.254 8 N -0.603 5.603 9 Si 0.786 3.214 10 H -0.220 1.220 11 H -0.226 1.226 12 H -0.199 1.199 13 C -0.147 4.147 14 C -0.017 4.017 15 N -0.337 5.337 16 C 0.360 3.640 17 O -0.445 6.445 18 C -0.181 4.181 19 C -0.110 4.110 20 C -0.093 4.093 21 Cl -0.022 7.022 22 C -0.063 4.063 23 C -0.154 4.154 24 C 0.122 3.878 25 F -0.103 7.103 26 C -0.016 4.016 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.211 0.789 33 H 0.057 0.943 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.191 0.809 39 H 0.199 0.801 40 H 0.206 0.794 41 H 0.091 0.909 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.397 -14.363 0.404 14.765 hybrid contribution 0.003 1.070 -0.622 1.237 sum 3.400 -13.294 -0.219 13.723 Atomic orbital electron populations 1.21708 0.92483 1.01816 1.02444 1.21771 0.96949 0.94196 0.94331 1.20785 0.96050 0.89690 0.89462 1.42475 1.62409 1.11171 1.22032 1.19485 1.25137 0.89778 1.02865 0.91140 1.25278 1.01343 1.01110 0.97622 1.69765 1.41611 1.37272 1.11701 0.85421 0.76703 0.81746 0.77556 1.22003 1.22597 1.19878 1.22910 1.03001 0.91533 0.97297 1.22514 1.01438 0.98566 0.79151 1.48416 1.61567 1.11205 1.12515 1.17813 0.77365 0.82848 0.85960 1.90789 1.52601 1.27066 1.74020 1.19877 1.09826 0.94612 0.93766 1.22695 0.95503 0.97612 0.95227 1.21156 1.05310 0.89244 0.93602 1.98477 1.94855 1.25347 1.83521 1.21535 0.93302 0.89414 1.02008 1.21425 1.02582 0.99717 0.91678 1.18029 0.97830 0.79642 0.92326 1.91560 1.91544 1.40686 1.86549 1.22586 1.00123 0.81065 0.97819 0.91483 0.91195 0.93814 0.95051 0.96141 0.78916 0.94318 0.89938 0.86723 0.89762 0.90115 0.80941 0.80145 0.79436 0.90898 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.34 8.26 71.98 0.59 -2.74 16 2 C -0.07 -1.94 0.61 -50.99 -0.03 -1.97 16 3 C 0.17 5.80 5.07 86.38 0.44 6.24 16 4 N -0.74 -33.31 5.15 -343.45 -1.77 -35.08 16 5 C -0.24 -12.46 9.99 84.03 0.84 -11.62 16 6 H 0.07 3.57 7.83 -2.91 -0.02 3.54 16 7 C -0.06 -3.24 5.50 84.86 0.47 -2.77 16 8 N -0.95 -54.16 13.06 21.65 0.28 -53.88 16 9 Si 0.95 44.36 29.55 68.60 2.03 46.38 16 10 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 11 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 C -0.11 -2.25 6.04 32.06 0.19 -2.06 16 14 C 0.10 2.39 6.63 86.93 0.58 2.97 16 15 N -0.61 -17.21 3.33 -828.99 -2.76 -19.97 16 16 C 0.57 18.56 7.81 86.74 0.68 19.24 16 17 O -0.56 -21.26 15.60 -3.93 -0.06 -21.33 16 18 C -0.18 -5.21 5.88 -20.05 -0.12 -5.33 16 19 C -0.09 -2.66 8.38 22.55 0.19 -2.47 16 20 C -0.07 -1.72 6.31 22.28 0.14 -1.58 16 21 Cl -0.05 -1.56 28.95 -2.72 -0.08 -1.64 16 22 C -0.04 -0.82 9.82 22.34 0.22 -0.60 16 23 C -0.14 -2.47 10.01 22.28 0.22 -2.25 16 24 C 0.14 3.74 7.28 22.67 0.17 3.90 16 25 F -0.13 -3.71 15.57 44.97 0.70 -3.01 16 26 C 0.11 3.09 3.47 86.73 0.30 3.39 16 27 H 0.07 1.50 7.44 -2.39 -0.02 1.48 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.04 1.40 7.11 -2.39 -0.02 1.38 16 30 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.02 0.73 8.13 -2.38 -0.02 0.71 16 32 H 0.38 17.98 6.37 -92.70 -0.59 17.39 16 33 H 0.25 13.93 8.31 -92.71 -0.77 13.15 16 34 H 0.08 1.70 8.04 -2.39 -0.02 1.68 16 35 H 0.11 1.79 8.04 -2.39 -0.02 1.78 16 36 H 0.08 1.73 7.71 -2.39 -0.02 1.71 16 37 H 0.08 1.87 7.98 -2.39 -0.02 1.85 16 38 H 0.17 5.42 2.74 -8.31 -0.02 5.40 16 39 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.19 1.99 8.06 -2.91 -0.02 1.96 16 41 H 0.07 2.37 6.42 -2.39 -0.02 2.35 16 42 H 0.07 2.30 6.43 -2.39 -0.02 2.28 16 Total: -1.00 -66.02 358.52 3.69 -62.34 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.47 Total: 23.84 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 4.87 Total: 2.34 kcal Atomic # 7 Polarization: -104.68 SS G_CDS: -4.24 Total: -108.93 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.06 Total: -21.33 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.70 Total: -3.01 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -66.02 3.69 -62.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500362574.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.269 kcal (2) G-P(sol) polarization free energy of solvation -66.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds