Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 110.65687 * 2 1 4 4 N 1.46499 * 109.47406 * 56.80651 * 3 2 1 5 5 C 1.36941 * 120.00299 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99724 * 359.97438 * 5 4 3 7 7 C 1.38809 * 120.00451 * 180.02562 * 5 4 3 8 8 N 1.31627 * 119.99418 * 359.97438 * 7 5 4 9 9 Si 1.86790 * 120.00220 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47338 * 60.00005 * 9 7 5 11 11 H 1.48505 * 109.47512 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47295 * 299.99926 * 9 7 5 13 13 C 1.54613 * 110.74009 * 236.80627 * 2 1 3 14 14 C 1.54010 * 105.04363 * 263.51226 * 13 2 1 15 15 N 1.47481 * 107.08452 * 1.30491 * 14 13 2 16 16 C 1.34772 * 127.03385 * 154.51739 * 15 14 13 17 17 O 1.21574 * 120.00105 * 185.30124 * 16 15 14 18 18 C 1.47700 * 120.00259 * 5.29739 * 16 15 14 19 19 C 1.39660 * 120.15263 * 34.75443 * 18 16 15 20 20 C 1.37966 * 119.86015 * 180.27131 * 19 18 16 21 21 Cl 1.73599 * 119.90190 * 179.97438 * 20 19 18 22 22 C 1.38570 * 120.19231 * 0.02562 * 20 19 18 23 23 C 1.38188 * 120.32362 * 359.97438 * 22 20 19 24 24 C 1.38316 * 120.13747 * 0.02562 * 23 22 20 25 25 F 1.35100 * 120.10052 * 179.97438 * 24 23 22 26 26 C 1.48117 * 105.93304 * 334.78272 * 15 14 13 27 27 H 1.09004 * 109.47136 * 183.19631 * 1 2 3 28 28 H 1.09005 * 109.47136 * 303.19389 * 1 2 3 29 29 H 1.09000 * 109.47100 * 63.19397 * 1 2 3 30 30 H 1.09001 * 109.47428 * 176.80887 * 3 2 1 31 31 H 1.09007 * 109.46926 * 296.80689 * 3 2 1 32 32 H 0.96997 * 119.99817 * 359.97438 * 4 3 2 33 33 H 0.97001 * 119.99467 * 179.97438 * 8 7 5 34 34 H 1.08997 * 110.32911 * 144.61719 * 13 2 1 35 35 H 1.09003 * 110.41239 * 22.44784 * 13 2 1 36 36 H 1.08997 * 109.90961 * 241.94221 * 14 13 2 37 37 H 1.09000 * 109.91173 * 120.66444 * 14 13 2 38 38 H 1.07996 * 120.06954 * 0.25415 * 19 18 16 39 39 H 1.07996 * 119.83287 * 179.97438 * 22 20 19 40 40 H 1.08001 * 119.93039 * 179.97438 * 23 22 20 41 41 H 1.09004 * 110.66329 * 157.50985 * 26 15 14 42 42 H 1.09008 * 110.66066 * 280.62258 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4316 0.0000 4 7 1.5345 2.1553 1.1558 5 6 1.8809 3.4636 1.3649 6 1 2.5490 3.9617 0.6780 7 6 1.3741 4.1492 2.4603 8 7 0.5603 3.5419 3.2978 9 14 1.8472 5.9335 2.7459 10 1 1.4203 6.7512 1.5821 11 1 1.1772 6.4330 3.9735 12 1 3.3197 6.0353 2.9088 13 6 2.0776 -0.7916 -1.2100 14 6 2.3763 -2.2003 -0.6640 15 7 1.9871 -2.2052 0.7586 16 6 1.6221 -3.2721 1.4966 17 8 1.2324 -3.1172 2.6377 18 6 1.6955 -4.6296 0.9192 19 6 2.7153 -4.9564 0.0227 20 6 2.7748 -6.2246 -0.5174 21 17 4.0415 -6.6318 -1.6324 22 6 1.8258 -7.1738 -0.1732 23 6 0.8135 -6.8589 0.7131 24 6 0.7409 -5.5916 1.2627 25 9 -0.2495 -5.2843 2.1287 26 6 2.0733 -0.7966 1.2084 27 1 -0.3633 -1.0261 0.0573 28 1 -0.3634 0.5626 0.8600 29 1 -0.3633 0.4634 -0.9172 30 1 3.1580 1.4097 0.0572 31 1 1.7642 1.9351 -0.9173 32 1 0.9342 1.7081 1.7726 33 1 0.2065 4.0209 4.0635 34 1 2.9910 -0.3287 -1.5834 35 1 1.3292 -0.8429 -2.0009 36 1 3.4403 -2.4172 -0.7586 37 1 1.7936 -2.9417 -1.2108 38 1 3.4555 -4.2179 -0.2475 39 1 1.8777 -8.1646 -0.5997 40 1 0.0769 -7.6035 0.9766 41 1 1.4489 -0.6346 2.0871 42 1 3.1077 -0.5212 1.4144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500362575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = -41.189770 kcal Electronic energy + Delta-G solvation = -27208.840357 eV Core-core repulsion = 23129.674646 eV Total energy + Delta-G solvation = -4079.165711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.21741 -40.61020 -39.20401 -37.88707 -36.83968 -34.89817 -32.95678 -31.77798 -30.75165 -30.41122 -29.25672 -26.77576 -25.77255 -24.47200 -23.31567 -23.01660 -22.00101 -20.09062 -18.89312 -17.95492 -17.67057 -17.09467 -16.89934 -16.34617 -15.88837 -15.75648 -15.44199 -14.58338 -14.56637 -14.38529 -13.89482 -13.86273 -13.77584 -13.62328 -13.38365 -13.13387 -12.90349 -12.54596 -12.37653 -12.08755 -11.91097 -11.73679 -11.58962 -11.55323 -11.50445 -10.99959 -10.80767 -10.52786 -10.49586 -10.33242 -10.07922 -9.93931 -9.71589 -9.61569 -9.08538 -8.86580 -8.65976 -6.90972 -5.74105 -3.03424 0.21043 0.47232 1.55283 2.43167 2.76565 3.12600 3.45498 3.49791 3.51251 3.68737 3.99410 4.13120 4.39823 4.55201 4.58664 4.65357 4.76995 4.89071 4.97933 5.15748 5.25405 5.30127 5.41861 5.42462 5.48096 5.51897 5.60164 5.72351 5.83591 5.97141 5.99279 6.08570 6.09415 6.13090 6.25604 6.38147 6.49255 6.65339 6.75384 6.84287 7.46221 7.70806 8.02747 8.44301 9.55446 10.12552 10.46817 11.48431 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.002590 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.768241 B =10808.132427 C =11691.345770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C 0.170 3.830 4 N -0.731 5.731 5 C -0.242 4.242 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.124 4.124 14 C 0.097 3.903 15 N -0.611 5.611 16 C 0.574 3.426 17 O -0.516 6.516 18 C -0.147 4.147 19 C -0.053 4.053 20 C -0.057 4.057 21 Cl -0.056 7.056 22 C -0.061 4.061 23 C -0.149 4.149 24 C 0.159 3.841 25 F -0.112 7.112 26 C 0.120 3.880 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.021 0.979 31 H 0.024 0.976 32 H 0.385 0.615 33 H 0.256 0.744 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.153 0.847 41 H 0.092 0.908 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.105 -24.778 -12.757 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.080 4.080 3 C 0.042 3.958 4 N -0.376 5.376 5 C -0.373 4.373 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.163 4.163 14 C -0.026 4.026 15 N -0.345 5.345 16 C 0.361 3.639 17 O -0.392 6.392 18 C -0.152 4.152 19 C -0.072 4.072 20 C -0.084 4.084 21 Cl -0.027 7.027 22 C -0.080 4.080 23 C -0.168 4.168 24 C 0.139 3.861 25 F -0.090 7.090 26 C -0.001 4.001 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.171 0.829 41 H 0.111 0.889 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.009 -24.622 -12.140 27.743 hybrid contribution 0.048 0.849 0.373 0.928 sum 4.057 -23.773 -11.767 26.834 Atomic orbital electron populations 1.21714 0.93399 1.00648 1.02956 1.21803 0.96701 0.96058 0.93439 1.20618 0.95632 0.87737 0.91853 1.42408 1.56959 1.10826 1.27416 1.19153 1.23172 0.87897 1.07092 0.91269 1.24743 1.00017 0.98299 0.97802 1.69654 1.36037 1.36355 1.15928 0.86273 0.77790 0.84989 0.77132 1.21325 1.21725 1.21306 1.22599 1.02196 0.93429 0.98033 1.22310 0.99669 0.99085 0.81513 1.48695 1.66128 1.08057 1.11595 1.17440 0.78277 0.82803 0.85359 1.90889 1.45493 1.85302 1.17507 1.20017 0.98052 0.95293 1.01815 1.21306 0.97207 0.95574 0.93129 1.20789 0.94118 0.95131 0.98315 1.98399 1.50208 1.93708 1.60404 1.21073 0.91909 0.99468 0.95525 1.21109 1.00969 0.95399 0.99335 1.17740 0.86100 0.92899 0.89398 1.91624 1.58034 1.93364 1.66022 1.22592 1.02002 0.77063 0.98468 0.93776 0.91030 0.92644 0.96079 0.95832 0.77997 0.93408 0.89989 0.90375 0.91296 0.90884 0.83033 0.83408 0.82942 0.88948 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.30 37.16 0.31 -1.80 16 2 C -0.08 -1.21 0.64 -152.82 -0.10 -1.31 16 3 C 0.17 3.22 5.11 -4.05 -0.02 3.20 16 4 N -0.73 -18.02 5.16 -59.91 -0.31 -18.33 16 5 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 9 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 C -0.12 -1.37 6.09 -25.36 -0.15 -1.53 16 14 C 0.10 0.98 5.23 -2.98 -0.02 0.97 16 15 N -0.61 -8.52 3.19 -171.14 -0.55 -9.07 16 16 C 0.57 8.87 7.46 -12.40 -0.09 8.78 16 17 O -0.52 -10.24 16.26 5.30 0.09 -10.15 16 18 C -0.15 -1.75 5.49 -104.91 -0.58 -2.32 16 19 C -0.05 -0.48 7.95 -39.15 -0.31 -0.79 16 20 C -0.06 -0.43 6.31 -39.56 -0.25 -0.68 16 21 Cl -0.06 -0.39 28.95 -51.86 -1.50 -1.89 16 22 C -0.06 -0.38 9.82 -39.48 -0.39 -0.77 16 23 C -0.15 -1.11 10.01 -39.57 -0.40 -1.51 16 24 C 0.16 1.79 7.24 -38.96 -0.28 1.51 16 25 F -0.11 -1.57 16.11 2.25 0.04 -1.53 16 26 C 0.12 1.96 5.68 -2.31 -0.01 1.95 16 27 H 0.04 0.67 8.07 -51.93 -0.42 0.26 16 28 H 0.07 1.38 6.69 -51.93 -0.35 1.04 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.02 0.40 8.11 -51.93 -0.42 -0.02 16 31 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.39 10.10 6.21 -40.82 -0.25 9.85 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 35 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 36 H 0.07 0.56 7.02 -51.93 -0.36 0.19 16 37 H 0.07 0.64 7.19 -51.93 -0.37 0.26 16 38 H 0.15 1.19 5.72 -52.49 -0.30 0.89 16 39 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 40 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.09 1.81 7.71 -51.93 -0.40 1.41 16 42 H 0.08 1.29 8.02 -51.92 -0.42 0.87 16 LS Contribution 363.41 15.07 5.48 5.48 Total: -1.00 -33.24 363.41 -8.94 -42.18 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.35 Total: 5.08 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.54 Total: -1.58 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.13 Total: -55.03 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.50 Total: -1.89 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.24 -8.94 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500362575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.993 kcal (2) G-P(sol) polarization free energy of solvation -33.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds