Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 110.65687 * 2 1 4 4 N 1.46499 * 109.47406 * 56.80651 * 3 2 1 5 5 C 1.36941 * 120.00299 * 180.02562 * 4 3 2 6 6 H 1.08000 * 119.99724 * 359.97438 * 5 4 3 7 7 C 1.38809 * 120.00451 * 180.02562 * 5 4 3 8 8 N 1.31627 * 119.99418 * 359.97438 * 7 5 4 9 9 Si 1.86790 * 120.00220 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47338 * 60.00005 * 9 7 5 11 11 H 1.48505 * 109.47512 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47295 * 299.99926 * 9 7 5 13 13 C 1.54613 * 110.74009 * 236.80627 * 2 1 3 14 14 C 1.54010 * 105.04363 * 263.51226 * 13 2 1 15 15 N 1.47481 * 107.08452 * 1.30491 * 14 13 2 16 16 C 1.34772 * 127.03385 * 154.51739 * 15 14 13 17 17 O 1.21574 * 120.00105 * 185.30124 * 16 15 14 18 18 C 1.47700 * 120.00259 * 5.29739 * 16 15 14 19 19 C 1.39660 * 120.15263 * 34.75443 * 18 16 15 20 20 C 1.37966 * 119.86015 * 180.27131 * 19 18 16 21 21 Cl 1.73599 * 119.90190 * 179.97438 * 20 19 18 22 22 C 1.38570 * 120.19231 * 0.02562 * 20 19 18 23 23 C 1.38188 * 120.32362 * 359.97438 * 22 20 19 24 24 C 1.38316 * 120.13747 * 0.02562 * 23 22 20 25 25 F 1.35100 * 120.10052 * 179.97438 * 24 23 22 26 26 C 1.48117 * 105.93304 * 334.78272 * 15 14 13 27 27 H 1.09004 * 109.47136 * 183.19631 * 1 2 3 28 28 H 1.09005 * 109.47136 * 303.19389 * 1 2 3 29 29 H 1.09000 * 109.47100 * 63.19397 * 1 2 3 30 30 H 1.09001 * 109.47428 * 176.80887 * 3 2 1 31 31 H 1.09007 * 109.46926 * 296.80689 * 3 2 1 32 32 H 0.96997 * 119.99817 * 359.97438 * 4 3 2 33 33 H 0.97001 * 119.99467 * 179.97438 * 8 7 5 34 34 H 1.08997 * 110.32911 * 144.61719 * 13 2 1 35 35 H 1.09003 * 110.41239 * 22.44784 * 13 2 1 36 36 H 1.08997 * 109.90961 * 241.94221 * 14 13 2 37 37 H 1.09000 * 109.91173 * 120.66444 * 14 13 2 38 38 H 1.07996 * 120.06954 * 0.25415 * 19 18 16 39 39 H 1.07996 * 119.83287 * 179.97438 * 22 20 19 40 40 H 1.08001 * 119.93039 * 179.97438 * 23 22 20 41 41 H 1.09004 * 110.66329 * 157.50985 * 26 15 14 42 42 H 1.09008 * 110.66066 * 280.62258 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0697 1.4316 0.0000 4 7 1.5345 2.1553 1.1558 5 6 1.8809 3.4636 1.3649 6 1 2.5490 3.9617 0.6780 7 6 1.3741 4.1492 2.4603 8 7 0.5603 3.5419 3.2978 9 14 1.8472 5.9335 2.7459 10 1 1.4203 6.7512 1.5821 11 1 1.1772 6.4330 3.9735 12 1 3.3197 6.0353 2.9088 13 6 2.0776 -0.7916 -1.2100 14 6 2.3763 -2.2003 -0.6640 15 7 1.9871 -2.2052 0.7586 16 6 1.6221 -3.2721 1.4966 17 8 1.2324 -3.1172 2.6377 18 6 1.6955 -4.6296 0.9192 19 6 2.7153 -4.9564 0.0227 20 6 2.7748 -6.2246 -0.5174 21 17 4.0415 -6.6318 -1.6324 22 6 1.8258 -7.1738 -0.1732 23 6 0.8135 -6.8589 0.7131 24 6 0.7409 -5.5916 1.2627 25 9 -0.2495 -5.2843 2.1287 26 6 2.0733 -0.7966 1.2084 27 1 -0.3633 -1.0261 0.0573 28 1 -0.3634 0.5626 0.8600 29 1 -0.3633 0.4634 -0.9172 30 1 3.1580 1.4097 0.0572 31 1 1.7642 1.9351 -0.9173 32 1 0.9342 1.7081 1.7726 33 1 0.2065 4.0209 4.0635 34 1 2.9910 -0.3287 -1.5834 35 1 1.3292 -0.8429 -2.0009 36 1 3.4403 -2.4172 -0.7586 37 1 1.7936 -2.9417 -1.2108 38 1 3.4555 -4.2179 -0.2475 39 1 1.8777 -8.1646 -0.5997 40 1 0.0769 -7.6035 0.9766 41 1 1.4489 -0.6346 2.0871 42 1 3.1077 -0.5212 1.4144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500362575.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = -61.925888 kcal Electronic energy + Delta-G solvation = -27209.739542 eV Core-core repulsion = 23129.674646 eV Total energy + Delta-G solvation = -4080.064896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.12348 -41.66688 -40.06770 -39.07357 -37.43818 -36.53954 -34.51031 -32.83141 -31.98674 -31.42244 -30.47878 -28.06116 -27.38213 -25.68146 -24.56848 -23.78444 -23.34697 -21.07590 -20.22020 -19.31149 -18.64155 -18.36687 -17.90280 -17.30344 -17.02462 -16.76222 -16.43243 -16.36372 -15.60928 -15.45449 -15.32244 -15.13747 -14.82091 -14.58434 -14.58104 -14.29249 -13.99639 -13.72456 -13.58548 -13.44152 -13.02971 -12.94308 -12.76443 -12.66915 -12.57920 -12.34987 -12.21029 -12.12086 -12.04537 -11.70536 -11.49725 -11.44141 -11.20654 -10.91447 -10.40634 -9.88709 -9.71012 -8.97170 -7.92984 -5.21743 -0.52870 -0.17364 0.95829 1.45894 1.46857 1.50302 1.56388 1.72066 2.29964 2.57070 2.96455 3.12027 3.40013 3.44742 3.57224 3.62172 3.83809 3.85067 3.92452 4.16699 4.23243 4.28088 4.30634 4.35752 4.53453 4.59058 4.68331 4.72831 4.75555 4.83363 4.84930 4.91867 4.95044 5.02493 5.04853 5.11731 5.26632 5.33987 5.42615 5.44577 5.51719 6.28400 6.35819 6.87546 7.34743 8.12560 8.33559 9.30623 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.002590 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.768241 B =10808.132427 C =11691.345770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 C 0.168 3.832 4 N -0.746 5.746 5 C -0.241 4.241 6 H 0.080 0.920 7 C -0.080 4.080 8 N -0.974 5.974 9 Si 0.974 3.026 10 H -0.276 1.276 11 H -0.300 1.300 12 H -0.277 1.277 13 C -0.113 4.113 14 C 0.094 3.906 15 N -0.608 5.608 16 C 0.566 3.434 17 O -0.579 6.579 18 C -0.166 4.166 19 C -0.047 4.047 20 C -0.053 4.053 21 Cl -0.043 7.043 22 C -0.042 4.042 23 C -0.135 4.135 24 C 0.129 3.871 25 F -0.139 7.139 26 C 0.122 3.878 27 H 0.049 0.951 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.372 0.628 33 H 0.249 0.751 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.163 0.837 39 H 0.185 0.815 40 H 0.180 0.820 41 H 0.044 0.956 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.962 -26.896 -16.440 32.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.074 4.074 3 C 0.041 3.959 4 N -0.389 5.389 5 C -0.373 4.373 6 H 0.098 0.902 7 C -0.272 4.272 8 N -0.625 5.625 9 Si 0.803 3.197 10 H -0.202 1.202 11 H -0.227 1.227 12 H -0.203 1.203 13 C -0.151 4.151 14 C -0.027 4.027 15 N -0.340 5.340 16 C 0.356 3.644 17 O -0.459 6.459 18 C -0.170 4.170 19 C -0.066 4.066 20 C -0.080 4.080 21 Cl -0.014 7.014 22 C -0.061 4.061 23 C -0.153 4.153 24 C 0.109 3.891 25 F -0.117 7.117 26 C 0.000 4.000 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.205 0.795 33 H 0.058 0.942 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.181 0.819 39 H 0.202 0.798 40 H 0.198 0.802 41 H 0.063 0.937 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.914 -26.752 -15.923 31.689 hybrid contribution -0.462 1.393 1.410 2.035 sum 5.452 -25.359 -14.513 29.722 Atomic orbital electron populations 1.21613 0.94310 1.00322 1.01669 1.21671 0.95834 0.94477 0.95394 1.20819 0.95908 0.89266 0.89872 1.42671 1.56899 1.10459 1.28876 1.19637 1.21946 0.89095 1.06578 0.90164 1.25603 1.00845 1.02615 0.98154 1.69846 1.38076 1.37912 1.16625 0.85194 0.77645 0.80101 0.76717 1.20162 1.22667 1.20297 1.22615 1.03494 0.92856 0.96162 1.22642 1.01963 0.99212 0.78900 1.48736 1.65424 1.06583 1.13224 1.18120 0.77076 0.84417 0.84769 1.90844 1.48414 1.86410 1.20275 1.19746 1.00138 0.93293 1.03853 1.21323 0.96315 0.96669 0.92322 1.20883 0.94453 0.94702 0.97975 1.98415 1.49663 1.93505 1.59794 1.21504 0.90179 1.00581 0.93804 1.21400 1.01580 0.94024 0.98320 1.18225 0.86126 0.94537 0.90255 1.91555 1.59200 1.93760 1.67219 1.22341 1.00825 0.79374 0.97483 0.93232 0.95289 0.91147 0.95101 0.94896 0.79519 0.94231 0.87864 0.88315 0.88214 0.88623 0.81938 0.79786 0.80239 0.93738 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 8.30 71.98 0.60 -3.45 16 2 C -0.07 -2.20 0.64 -51.09 -0.03 -2.24 16 3 C 0.17 6.28 5.11 86.38 0.44 6.72 16 4 N -0.75 -37.87 5.16 -343.45 -1.77 -39.64 16 5 C -0.24 -13.46 9.99 84.03 0.84 -12.62 16 6 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 7 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 8 N -0.97 -61.89 13.06 21.65 0.28 -61.61 16 9 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 C -0.11 -2.13 6.09 31.48 0.19 -1.94 16 14 C 0.09 1.62 5.23 86.53 0.45 2.08 16 15 N -0.61 -17.05 3.19 -813.63 -2.60 -19.65 16 16 C 0.57 18.34 7.46 86.74 0.65 18.99 16 17 O -0.58 -25.12 16.26 -3.95 -0.06 -25.18 16 18 C -0.17 -3.87 5.49 -20.05 -0.11 -3.98 16 19 C -0.05 -0.73 7.95 22.55 0.18 -0.55 16 20 C -0.05 -0.61 6.31 22.28 0.14 -0.46 16 21 Cl -0.04 -0.42 28.95 -2.72 -0.08 -0.50 16 22 C -0.04 -0.36 9.82 22.34 0.22 -0.14 16 23 C -0.13 -1.65 10.01 22.28 0.22 -1.43 16 24 C 0.13 2.87 7.24 22.67 0.16 3.03 16 25 F -0.14 -4.11 16.11 44.97 0.72 -3.39 16 26 C 0.12 4.20 5.68 86.61 0.49 4.69 16 27 H 0.05 1.56 8.07 -2.38 -0.02 1.54 16 28 H 0.03 1.19 6.69 -2.38 -0.02 1.18 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.03 1.12 8.11 -2.39 -0.02 1.10 16 31 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.37 20.77 6.21 -92.71 -0.58 20.19 16 33 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.10 1.59 7.85 -2.39 -0.02 1.57 16 35 H 0.10 1.53 7.87 -2.39 -0.02 1.51 16 36 H 0.10 1.18 7.02 -2.39 -0.02 1.17 16 37 H 0.10 1.29 7.19 -2.39 -0.02 1.28 16 38 H 0.16 2.03 5.72 -2.91 -0.02 2.02 16 39 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 40 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 41 H 0.04 1.94 7.71 -2.38 -0.02 1.92 16 42 H 0.08 2.63 8.02 -2.38 -0.02 2.61 16 Total: -1.00 -78.88 363.41 3.92 -74.96 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.49 Total: 21.53 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 4.91 Total: 4.46 kcal Atomic # 7 Polarization: -116.81 SS G_CDS: -4.08 Total: -120.90 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.06 Total: -25.18 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.72 Total: -3.39 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -78.88 3.92 -74.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500362575.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.030 kcal (2) G-P(sol) polarization free energy of solvation -78.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds