Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 119.99762 * 2 1 4 4 H 1.48506 * 109.47310 * 275.21932 * 3 2 1 5 5 H 1.48498 * 109.47123 * 35.22268 * 3 2 1 6 6 H 1.48501 * 109.46918 * 155.22228 * 3 2 1 7 7 C 1.38888 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00303 * 347.63051 * 7 2 1 9 9 N 1.37217 * 119.99835 * 167.63462 * 7 2 1 10 10 C 1.34774 * 119.99811 * 131.46209 * 9 7 2 11 11 O 1.21272 * 120.00096 * 180.02562 * 10 9 7 12 12 C 1.50706 * 120.00257 * 0.02562 * 10 9 7 13 13 C 1.50694 * 109.47109 * 179.97438 * 12 10 9 14 14 C 1.35136 * 125.69563 * 124.71907 * 13 12 10 15 15 N 1.36805 * 107.18562 * 179.83759 * 14 13 12 16 16 C 1.36605 * 132.54522 * 180.10275 * 15 14 13 17 17 C 1.35137 * 120.57598 * 180.33853 * 16 15 14 18 18 F 1.35103 * 119.87490 * 179.97438 * 17 16 15 19 19 C 1.40614 * 120.24567 * 0.02562 * 17 16 15 20 20 C 1.36010 * 119.68589 * 359.97438 * 19 17 16 21 21 C 1.37024 * 107.01660 * 0.41351 * 15 14 13 22 22 N 1.32607 * 108.03344 * 359.74129 * 21 15 14 23 23 C 1.39422 * 120.00027 * 311.46723 * 9 7 2 24 24 C 1.39065 * 119.69670 * 346.80040 * 23 9 7 25 25 C 1.38379 * 119.09647 * 180.02562 * 24 23 9 26 26 C 1.38830 * 118.49458 * 0.02562 * 25 24 23 27 27 C 1.38145 * 119.30874 * 0.27548 * 26 25 24 28 28 N 1.31879 * 120.85272 * 359.40248 * 27 26 25 29 29 H 0.96998 * 120.00200 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46719 * 299.99678 * 12 10 9 31 31 H 1.09003 * 109.47075 * 59.99346 * 12 10 9 32 32 H 1.08005 * 126.40446 * 359.97438 * 14 13 12 33 33 H 1.08002 * 119.71154 * 0.36977 * 16 15 14 34 34 H 1.07994 * 120.15075 * 180.02562 * 19 17 16 35 35 H 1.07998 * 120.30942 * 180.02562 * 20 19 17 36 36 H 1.07996 * 120.45362 * 359.97438 * 24 23 9 37 37 H 1.08002 * 120.75377 * 180.02562 * 25 24 23 38 38 H 1.07998 * 120.34154 * 180.02562 * 26 25 24 39 39 H 1.08001 * 119.56799 * 179.70432 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3853 2.1102 -1.3943 5 1 1.5050 2.6183 0.8075 6 1 3.5965 1.4109 0.5868 7 6 2.0086 -1.2028 -0.0005 8 1 1.4874 -2.1274 0.1994 9 7 3.3569 -1.2165 -0.2550 10 6 4.1889 -1.8983 0.5568 11 8 5.3806 -1.9101 0.3322 12 6 3.6385 -2.6462 1.7438 13 6 4.7675 -3.3189 2.4813 14 6 5.0546 -3.1656 3.7929 15 7 6.1444 -3.9475 4.0622 16 6 6.8550 -4.1794 5.2056 17 6 7.9193 -5.0121 5.1965 18 9 8.6123 -5.2309 6.3355 19 6 8.3088 -5.6508 4.0059 20 6 7.6087 -5.4273 2.8615 21 6 6.5011 -4.5565 2.8877 22 7 5.6544 -4.1613 1.9467 23 6 3.8660 -0.5250 -1.3534 24 6 2.9994 -0.0579 -2.3356 25 6 3.5182 0.6264 -3.4207 26 6 4.8913 0.8203 -3.4865 27 6 5.6936 0.3233 -2.4777 28 7 5.1702 -0.3199 -1.4522 29 1 -0.4850 0.8400 -0.0004 30 1 3.1335 -1.9477 2.4110 31 1 2.9288 -3.3994 1.4015 32 1 4.5218 -2.5440 4.4973 33 1 6.5633 -3.6935 6.1249 34 1 9.1594 -6.3162 4.0005 35 1 7.8988 -5.9129 1.9414 36 1 1.9360 -0.2277 -2.2531 37 1 2.8696 1.0012 -4.1987 38 1 5.3280 1.3507 -4.3198 39 1 6.7628 0.4676 -2.5271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001530827649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = 84.856189 kcal Electronic energy + Delta-G solvation = -28332.700755 eV Core-core repulsion = 24157.893313 eV Total energy + Delta-G solvation = -4174.807441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.26904 -42.76348 -40.07380 -38.21591 -37.10253 -35.09733 -33.75372 -32.35394 -31.65300 -31.39470 -29.58930 -29.02773 -27.45307 -25.30699 -23.85694 -22.89313 -22.75399 -22.22586 -20.73521 -19.18564 -18.47513 -18.16746 -17.60033 -16.57443 -16.39404 -16.13308 -15.92450 -15.44220 -15.27657 -15.20027 -14.93783 -14.67336 -14.23002 -13.99743 -13.78606 -13.68345 -13.44749 -13.07105 -12.85276 -12.65559 -12.30460 -12.07491 -11.82396 -11.70181 -11.43622 -11.13255 -11.08668 -11.02525 -10.81158 -10.19954 -9.88445 -9.58896 -9.20568 -9.16799 -8.71314 -8.55989 -8.15583 -7.90364 -7.29418 -6.64987 -4.46977 0.48794 1.08665 1.87747 2.08045 2.41669 2.80435 3.06840 3.17825 3.29094 3.44085 3.71138 3.84147 3.99046 4.07459 4.10873 4.28617 4.56276 4.56883 4.76490 4.95224 5.17776 5.28932 5.37429 5.39635 5.47311 5.57350 5.71281 5.77523 5.80087 5.86375 5.99353 6.14940 6.15496 6.18800 6.32557 6.55085 6.68149 6.77042 6.94158 7.01189 7.16161 7.51564 7.91700 8.02423 8.09244 8.60461 8.83570 9.14911 9.56268 10.40398 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.003108 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.153144 B = 9006.758637 C = 9924.764960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.087 3.913 3 Si 0.856 3.144 4 H -0.255 1.255 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.363 4.363 8 H 0.115 0.885 9 N -0.410 5.410 10 C 0.500 3.500 11 O -0.497 6.497 12 C -0.045 4.045 13 C 0.094 3.906 14 C -0.083 4.083 15 N -0.354 5.354 16 C 0.022 3.978 17 C 0.074 3.926 18 F -0.126 7.126 19 C -0.146 4.146 20 C -0.033 4.033 21 C 0.200 3.800 22 N -0.444 5.444 23 C 0.359 3.641 24 C -0.198 4.198 25 C -0.062 4.062 26 C -0.237 4.237 27 C 0.118 3.882 28 N -0.489 5.489 29 H 0.280 0.720 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.187 0.813 33 H 0.170 0.830 34 H 0.152 0.848 35 H 0.161 0.839 36 H 0.150 0.850 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.291 -5.722 6.685 12.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.123 4.123 3 Si 0.681 3.319 4 H -0.180 1.180 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.133 0.867 9 N -0.125 5.125 10 C 0.288 3.712 11 O -0.370 6.370 12 C -0.085 4.085 13 C -0.040 4.040 14 C -0.214 4.214 15 N -0.027 5.027 16 C -0.102 4.102 17 C 0.052 3.948 18 F -0.105 7.105 19 C -0.170 4.170 20 C -0.053 4.053 21 C -0.042 4.042 22 N -0.163 5.163 23 C 0.129 3.871 24 C -0.222 4.222 25 C -0.088 4.088 26 C -0.259 4.259 27 C -0.041 4.041 28 N -0.205 5.205 29 H 0.090 0.910 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.204 0.796 33 H 0.187 0.813 34 H 0.169 0.831 35 H 0.178 0.822 36 H 0.167 0.833 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.216 -6.242 6.603 13.672 hybrid contribution -0.332 1.658 0.445 1.748 sum 9.884 -4.584 7.047 12.976 Atomic orbital electron populations 1.69679 1.06047 1.28688 1.44029 1.25390 0.95137 0.98508 0.93315 0.87142 0.81197 0.83435 0.80129 1.17976 1.20899 1.18357 1.19088 0.80268 0.96261 1.53324 0.86743 1.41618 1.08070 1.43448 1.19330 1.20572 0.86158 0.80931 0.83513 1.90711 1.14946 1.60173 1.71179 1.19880 0.93713 0.99263 0.95693 1.20552 0.96776 0.96524 0.90143 1.22465 0.94212 1.05201 0.99485 1.42460 1.21036 1.30899 1.08295 1.21135 0.95216 1.02554 0.91272 1.16556 0.93643 1.01088 0.83541 1.91535 1.77568 1.93600 1.47794 1.20979 1.02622 1.02747 0.90700 1.20164 0.90790 0.94958 0.99405 1.21069 1.00407 1.01102 0.81657 1.70744 1.04290 1.14015 1.27266 1.19100 0.88354 0.92028 0.87585 1.21776 1.02579 1.03199 0.94639 1.21254 0.95013 0.95763 0.96798 1.21774 0.94645 1.07357 1.02123 1.22455 0.99594 0.92800 0.89295 1.67669 1.12140 1.16198 1.24500 0.90977 0.86859 0.87229 0.79565 0.81251 0.83059 0.82177 0.83261 0.85767 0.86122 0.83821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.77 13.96 55.49 0.77 -21.00 16 2 C 0.09 2.16 4.15 -17.49 -0.07 2.09 16 3 Si 0.86 20.26 24.50 -169.99 -4.16 16.10 16 4 H -0.26 -5.89 6.15 56.52 0.35 -5.54 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.26 -6.66 7.07 56.52 0.40 -6.26 16 7 C -0.36 -8.91 8.07 -14.90 -0.12 -9.03 16 8 H 0.12 2.84 7.63 -52.49 -0.40 2.44 16 9 N -0.41 -10.08 2.28 -60.71 -0.14 -10.22 16 10 C 0.50 11.85 7.58 -10.98 -0.08 11.76 16 11 O -0.50 -13.02 13.90 5.56 0.08 -12.94 16 12 C -0.04 -0.85 5.04 -29.04 -0.15 -0.99 16 13 C 0.09 1.71 5.85 -82.98 -0.49 1.22 16 14 C -0.08 -1.22 11.63 -16.44 -0.19 -1.41 16 15 N -0.35 -5.01 2.95 -62.59 -0.18 -5.19 16 16 C 0.02 0.24 10.92 -16.53 -0.18 0.06 16 17 C 0.07 0.77 7.25 -39.79 -0.29 0.48 16 18 F -0.13 -1.25 17.26 2.25 0.04 -1.21 16 19 C -0.15 -1.41 10.05 -39.49 -0.40 -1.81 16 20 C -0.03 -0.39 10.10 -39.37 -0.40 -0.79 16 21 C 0.20 3.19 7.81 -156.06 -1.22 1.97 16 22 N -0.44 -8.61 10.67 -9.01 -0.10 -8.70 16 23 C 0.36 8.78 5.11 -154.64 -0.79 7.99 16 24 C -0.20 -4.44 6.05 -39.22 -0.24 -4.68 16 25 C -0.06 -1.18 9.94 -39.31 -0.39 -1.57 16 26 C -0.24 -4.19 10.11 -39.40 -0.40 -4.59 16 27 C 0.12 2.34 11.18 -17.57 -0.20 2.14 16 28 N -0.49 -11.86 8.00 -12.34 -0.10 -11.96 16 29 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.11 1.93 8.06 -51.93 -0.42 1.51 16 31 H 0.11 1.96 7.81 -51.93 -0.41 1.55 16 32 H 0.19 2.06 8.06 -52.48 -0.42 1.64 16 33 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.15 3.46 6.02 -52.49 -0.32 3.15 16 37 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 38 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -33.16 338.89 -7.97 -41.12 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -3.69 Total: 6.05 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -5.59 Total: 2.85 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.26 Total: -57.07 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.08 Total: -12.94 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.16 Total: 16.10 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.16 -7.97 -41.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530827649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.979 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds