Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 119.99762 * 2 1 4 4 H 1.48506 * 109.47310 * 275.21932 * 3 2 1 5 5 H 1.48498 * 109.47123 * 35.22268 * 3 2 1 6 6 H 1.48501 * 109.46918 * 155.22228 * 3 2 1 7 7 C 1.38888 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00303 * 347.63051 * 7 2 1 9 9 N 1.37217 * 119.99835 * 167.63462 * 7 2 1 10 10 C 1.34774 * 119.99811 * 131.46209 * 9 7 2 11 11 O 1.21272 * 120.00096 * 180.02562 * 10 9 7 12 12 C 1.50706 * 120.00257 * 0.02562 * 10 9 7 13 13 C 1.50694 * 109.47109 * 179.97438 * 12 10 9 14 14 C 1.35136 * 125.69563 * 124.71907 * 13 12 10 15 15 N 1.36805 * 107.18562 * 179.83759 * 14 13 12 16 16 C 1.36605 * 132.54522 * 180.10275 * 15 14 13 17 17 C 1.35137 * 120.57598 * 180.33853 * 16 15 14 18 18 F 1.35103 * 119.87490 * 179.97438 * 17 16 15 19 19 C 1.40614 * 120.24567 * 0.02562 * 17 16 15 20 20 C 1.36010 * 119.68589 * 359.97438 * 19 17 16 21 21 C 1.37024 * 107.01660 * 0.41351 * 15 14 13 22 22 N 1.32607 * 108.03344 * 359.74129 * 21 15 14 23 23 C 1.39422 * 120.00027 * 311.46723 * 9 7 2 24 24 C 1.39065 * 119.69670 * 346.80040 * 23 9 7 25 25 C 1.38379 * 119.09647 * 180.02562 * 24 23 9 26 26 C 1.38830 * 118.49458 * 0.02562 * 25 24 23 27 27 C 1.38145 * 119.30874 * 0.27548 * 26 25 24 28 28 N 1.31879 * 120.85272 * 359.40248 * 27 26 25 29 29 H 0.96998 * 120.00200 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46719 * 299.99678 * 12 10 9 31 31 H 1.09003 * 109.47075 * 59.99346 * 12 10 9 32 32 H 1.08005 * 126.40446 * 359.97438 * 14 13 12 33 33 H 1.08002 * 119.71154 * 0.36977 * 16 15 14 34 34 H 1.07994 * 120.15075 * 180.02562 * 19 17 16 35 35 H 1.07998 * 120.30942 * 180.02562 * 20 19 17 36 36 H 1.07996 * 120.45362 * 359.97438 * 24 23 9 37 37 H 1.08002 * 120.75377 * 180.02562 * 25 24 23 38 38 H 1.07998 * 120.34154 * 180.02562 * 26 25 24 39 39 H 1.08001 * 119.56799 * 179.70432 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3853 2.1102 -1.3943 5 1 1.5050 2.6183 0.8075 6 1 3.5965 1.4109 0.5868 7 6 2.0086 -1.2028 -0.0005 8 1 1.4874 -2.1274 0.1994 9 7 3.3569 -1.2165 -0.2550 10 6 4.1889 -1.8983 0.5568 11 8 5.3806 -1.9101 0.3322 12 6 3.6385 -2.6462 1.7438 13 6 4.7675 -3.3189 2.4813 14 6 5.0546 -3.1656 3.7929 15 7 6.1444 -3.9475 4.0622 16 6 6.8550 -4.1794 5.2056 17 6 7.9193 -5.0121 5.1965 18 9 8.6123 -5.2309 6.3355 19 6 8.3088 -5.6508 4.0059 20 6 7.6087 -5.4273 2.8615 21 6 6.5011 -4.5565 2.8877 22 7 5.6544 -4.1613 1.9467 23 6 3.8660 -0.5250 -1.3534 24 6 2.9994 -0.0579 -2.3356 25 6 3.5182 0.6264 -3.4207 26 6 4.8913 0.8203 -3.4865 27 6 5.6936 0.3233 -2.4777 28 7 5.1702 -0.3199 -1.4522 29 1 -0.4850 0.8400 -0.0004 30 1 3.1335 -1.9477 2.4110 31 1 2.9288 -3.3994 1.4015 32 1 4.5218 -2.5440 4.4973 33 1 6.5633 -3.6935 6.1249 34 1 9.1594 -6.3162 4.0005 35 1 7.8988 -5.9129 1.9414 36 1 1.9360 -0.2277 -2.2531 37 1 2.8696 1.0012 -4.1987 38 1 5.3280 1.3507 -4.3198 39 1 6.7628 0.4676 -2.5271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001530827649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = 65.566668 kcal Electronic energy + Delta-G solvation = -28333.537211 eV Core-core repulsion = 24157.893313 eV Total energy + Delta-G solvation = -4175.643898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.08344 -43.85150 -41.77596 -39.83891 -38.19193 -36.90545 -34.76913 -34.20648 -33.22027 -32.85523 -31.07849 -30.08259 -28.71123 -27.16153 -24.98789 -24.31931 -23.81578 -23.77828 -22.05834 -20.88988 -19.98616 -19.28475 -18.60189 -18.11048 -17.73442 -17.34532 -17.21816 -17.05284 -16.61512 -16.26376 -16.15406 -15.98960 -15.62109 -15.49738 -15.41699 -14.87462 -14.74861 -14.69559 -14.30488 -14.13531 -13.82755 -13.64552 -13.33769 -13.01568 -12.87949 -12.64111 -12.52899 -12.32345 -12.11362 -12.04230 -11.43787 -11.09255 -10.92500 -10.89337 -10.46042 -9.89583 -9.60926 -9.04462 -8.94613 -8.57671 -6.40196 -0.40696 0.11618 0.25750 0.49210 1.18259 1.25755 1.36937 1.41362 1.67414 1.95147 2.12228 2.30949 2.47758 2.76749 2.93211 3.12052 3.20313 3.37136 3.68955 3.76318 3.83366 4.06736 4.07582 4.14322 4.31041 4.37301 4.41416 4.47854 4.59177 4.68097 4.68925 4.81377 4.83555 4.93823 4.97000 5.17752 5.36420 5.41327 5.45970 5.51303 5.85583 5.99646 6.01948 6.26925 6.79102 6.87261 7.03808 7.36514 7.78520 8.50732 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.003108 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.153144 B = 9006.758637 C = 9924.764960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.071 3.929 3 Si 0.899 3.101 4 H -0.244 1.244 5 H -0.275 1.275 6 H -0.293 1.293 7 C -0.356 4.356 8 H 0.102 0.898 9 N -0.424 5.424 10 C 0.488 3.512 11 O -0.531 6.531 12 C -0.034 4.034 13 C 0.056 3.944 14 C -0.075 4.075 15 N -0.357 5.357 16 C 0.018 3.982 17 C 0.078 3.922 18 F -0.119 7.119 19 C -0.117 4.117 20 C -0.058 4.058 21 C 0.187 3.813 22 N -0.502 5.502 23 C 0.327 3.673 24 C -0.218 4.218 25 C -0.060 4.060 26 C -0.212 4.212 27 C 0.102 3.898 28 N -0.528 5.528 29 H 0.285 0.715 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.221 0.779 33 H 0.203 0.797 34 H 0.189 0.811 35 H 0.174 0.826 36 H 0.134 0.866 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.016 -5.049 6.934 13.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.168 1.168 5 H -0.201 1.201 6 H -0.219 1.219 7 C -0.483 4.483 8 H 0.120 0.880 9 N -0.140 5.140 10 C 0.278 3.722 11 O -0.406 6.406 12 C -0.074 4.074 13 C -0.077 4.077 14 C -0.205 4.205 15 N -0.029 5.029 16 C -0.105 4.105 17 C 0.055 3.945 18 F -0.097 7.097 19 C -0.141 4.141 20 C -0.078 4.078 21 C -0.057 4.057 22 N -0.222 5.222 23 C 0.099 3.901 24 C -0.241 4.241 25 C -0.085 4.085 26 C -0.233 4.233 27 C -0.056 4.056 28 N -0.245 5.245 29 H 0.096 0.904 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.238 0.762 33 H 0.219 0.781 34 H 0.206 0.794 35 H 0.191 0.809 36 H 0.152 0.848 37 H 0.181 0.819 38 H 0.190 0.810 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 11.920 -5.553 6.840 14.823 hybrid contribution -0.636 1.387 0.338 1.563 sum 11.284 -4.166 7.178 14.007 Atomic orbital electron populations 1.69700 1.06592 1.29428 1.45443 1.25596 0.95288 0.99638 0.93210 0.86521 0.78602 0.82074 0.80311 1.16840 1.20142 1.21942 1.18956 0.80526 0.95879 1.52947 0.88025 1.41776 1.07937 1.44099 1.20167 1.21342 0.85923 0.80645 0.84263 1.90655 1.16211 1.61494 1.72259 1.19771 0.94316 0.99005 0.94304 1.20493 0.97455 0.98090 0.91650 1.22801 0.94127 1.04832 0.98789 1.42555 1.21006 1.30521 1.08815 1.21689 0.94928 1.02621 0.91233 1.16659 0.93322 1.00589 0.83896 1.91567 1.77287 1.93460 1.47430 1.21382 1.02168 1.01200 0.89319 1.20415 0.90643 0.95635 1.01118 1.21567 1.00780 1.01531 0.81814 1.70593 1.06103 1.15939 1.29568 1.19344 0.89069 0.93264 0.88469 1.21800 1.01663 1.04792 0.95878 1.21786 0.96376 0.94148 0.96218 1.22288 0.93827 1.05020 1.02157 1.23140 1.01481 0.92121 0.88905 1.67613 1.12406 1.17661 1.26806 0.90404 0.85533 0.87337 0.76247 0.78058 0.79363 0.80901 0.84792 0.81860 0.81008 0.80848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.47 13.96 21.65 0.30 -45.17 16 2 C 0.07 3.60 4.15 84.91 0.35 3.96 16 3 Si 0.90 42.48 24.50 68.60 1.68 44.17 16 4 H -0.24 -10.93 6.15 99.48 0.61 -10.32 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.29 -15.48 7.07 99.48 0.70 -14.77 16 7 C -0.36 -18.27 8.07 84.01 0.68 -17.59 16 8 H 0.10 5.35 7.63 -2.91 -0.02 5.33 16 9 N -0.42 -21.83 2.28 -464.37 -1.06 -22.89 16 10 C 0.49 24.52 7.58 87.66 0.66 25.19 16 11 O -0.53 -29.40 13.90 -3.01 -0.04 -29.44 16 12 C -0.03 -1.36 5.04 29.10 0.15 -1.21 16 13 C 0.06 2.12 5.85 41.59 0.24 2.37 16 14 C -0.07 -2.21 11.63 83.20 0.97 -1.24 16 15 N -0.36 -9.85 2.95 -351.92 -1.04 -10.89 16 16 C 0.02 0.35 10.92 83.23 0.91 1.26 16 17 C 0.08 1.37 7.25 22.14 0.16 1.53 16 18 F -0.12 -1.94 17.26 44.97 0.78 -1.16 16 19 C -0.12 -1.93 10.05 22.33 0.22 -1.71 16 20 C -0.06 -1.34 10.10 22.41 0.23 -1.12 16 21 C 0.19 6.05 7.81 134.10 1.05 7.10 16 22 N -0.50 -20.53 10.67 -182.42 -1.95 -22.48 16 23 C 0.33 16.38 5.11 132.91 0.68 17.06 16 24 C -0.22 -9.72 6.05 22.50 0.14 -9.59 16 25 C -0.06 -2.09 9.94 22.45 0.22 -1.87 16 26 C -0.21 -6.70 10.11 22.39 0.23 -6.48 16 27 C 0.10 3.88 11.18 84.66 0.95 4.83 16 28 N -0.53 -26.00 8.00 -192.96 -1.54 -27.54 16 29 H 0.29 13.79 8.31 -92.71 -0.77 13.02 16 30 H 0.13 4.56 8.06 -2.39 -0.02 4.54 16 31 H 0.11 4.23 7.81 -2.39 -0.02 4.21 16 32 H 0.22 4.60 8.06 -2.91 -0.02 4.58 16 33 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 34 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 35 H 0.17 3.37 8.06 -2.91 -0.02 3.34 16 36 H 0.13 6.32 6.02 -2.91 -0.02 6.31 16 37 H 0.16 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 39 H 0.17 5.32 8.06 -2.91 -0.02 5.29 16 Total: -1.00 -76.96 338.89 5.97 -70.99 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 1.01 Total: 21.92 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 7.83 Total: 22.50 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -5.28 Total: -128.97 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.04 Total: -29.44 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.78 Total: -1.16 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.68 Total: 44.17 kcal Total: -76.96 5.97 -70.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001530827649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.559 kcal (2) G-P(sol) polarization free energy of solvation -76.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds