Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86803 * 119.99711 * 2 1 4 4 H 1.48499 * 109.47035 * 274.99698 * 3 2 1 5 5 H 1.48500 * 109.47377 * 34.99414 * 3 2 1 6 6 H 1.48503 * 109.47268 * 154.99527 * 3 2 1 7 7 C 1.40028 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99686 * 174.86120 * 7 2 1 9 9 C 1.41334 * 119.99972 * 354.85656 * 7 2 1 10 10 C 1.40617 * 119.78575 * 185.16150 * 9 7 2 11 11 C 1.38305 * 119.12642 * 179.97438 * 10 9 7 12 12 C 1.38696 * 118.66826 * 0.02562 * 11 10 9 13 13 C 1.39627 * 119.50164 * 359.97438 * 12 11 10 14 14 N 1.39271 * 119.58006 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99558 * 339.11488 * 14 13 12 16 16 O 1.21271 * 120.00298 * 3.71372 * 15 14 13 17 17 C 1.50699 * 119.99767 * 183.71621 * 15 14 13 18 18 C 1.50703 * 109.47459 * 179.97438 * 17 15 14 19 19 C 1.35131 * 125.69489 * 124.99545 * 18 17 15 20 20 N 1.36812 * 107.18795 * 180.02562 * 19 18 17 21 21 C 1.36598 * 132.54437 * 179.97438 * 20 19 18 22 22 C 1.35132 * 120.57313 * 179.97438 * 21 20 19 23 23 F 1.35104 * 119.87641 * 179.97438 * 22 21 20 24 24 C 1.40616 * 120.24633 * 0.04849 * 22 21 20 25 25 C 1.36010 * 119.68756 * 359.97152 * 24 22 21 26 26 C 1.37033 * 107.01273 * 359.97438 * 20 19 18 27 27 N 1.32620 * 108.03249 * 359.74098 * 26 20 19 28 28 N 1.31934 * 120.84796 * 0.26057 * 13 12 11 29 29 H 0.97002 * 119.99882 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.43718 * 0.02562 * 10 9 7 31 31 H 1.07999 * 120.66437 * 179.97438 * 11 10 9 32 32 H 1.08004 * 120.25084 * 180.02562 * 12 11 10 33 33 H 0.96993 * 120.00263 * 159.11436 * 14 13 12 34 34 H 1.09005 * 109.47221 * 299.99909 * 17 15 14 35 35 H 1.08998 * 109.47454 * 59.99567 * 17 15 14 36 36 H 1.07999 * 126.40423 * 0.04086 * 19 18 17 37 37 H 1.07995 * 119.71558 * 0.02562 * 21 20 19 38 38 H 1.08001 * 120.15351 * 179.97438 * 24 22 21 39 39 H 1.08000 * 120.31117 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3832 2.1075 -1.3947 5 1 1.4956 2.6200 0.8029 6 1 3.5878 1.4122 0.5918 7 6 2.0076 -1.2127 0.0005 8 1 3.0844 -1.2145 -0.0832 9 6 1.3052 -2.4341 0.1108 10 6 2.0171 -3.6418 0.2205 11 6 1.3160 -4.8291 0.3282 12 6 -0.0702 -4.7860 0.3237 13 6 -0.7195 -3.5550 0.2119 14 7 -2.1115 -3.5099 0.2067 15 6 -2.8201 -4.6110 -0.1123 16 8 -2.2485 -5.6583 -0.3289 17 6 -4.3229 -4.5407 -0.1998 18 6 -4.8686 -5.8958 -0.5702 19 6 -5.7999 -6.5872 0.1231 20 7 -6.0136 -7.7609 -0.5465 21 6 -6.8350 -8.8254 -0.3054 22 6 -6.8533 -9.8835 -1.1457 23 9 -7.6708 -10.9292 -0.8935 24 6 -6.0236 -9.9010 -2.2808 25 6 -5.2014 -8.8468 -2.5305 26 6 -5.1947 -7.7506 -1.6451 27 7 -4.5169 -6.6107 -1.6412 28 7 -0.0314 -2.4344 0.1056 29 1 -0.4850 0.8401 -0.0004 30 1 3.0971 -3.6422 0.2214 31 1 1.8376 -5.7710 0.4133 32 1 -0.6432 -5.6978 0.4068 33 1 -2.5709 -2.6860 0.4325 34 1 -4.7292 -4.2363 0.7649 35 1 -4.6091 -3.8140 -0.9601 36 1 -6.2850 -6.2719 1.0351 37 1 -7.4759 -8.8210 0.5638 38 1 -6.0391 -10.7477 -2.9512 39 1 -4.5602 -8.8494 -3.3996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536309823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = 66.675817 kcal Electronic energy + Delta-G solvation = -27213.300238 eV Core-core repulsion = 23037.704437 eV Total energy + Delta-G solvation = -4175.595802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.44927 -43.04427 -39.72895 -37.85677 -37.23109 -34.21516 -33.97608 -33.24632 -31.96509 -30.35563 -29.49729 -29.15557 -27.76896 -25.41624 -24.02507 -23.03385 -22.33591 -21.53959 -20.74920 -19.67271 -18.62141 -17.96758 -17.47785 -17.06702 -16.65952 -16.44713 -16.07906 -15.53065 -15.42060 -15.05631 -14.85145 -14.73643 -14.33683 -14.10772 -13.82118 -13.61305 -13.42064 -13.05247 -12.77682 -12.52270 -12.02025 -11.96137 -11.94882 -11.48139 -11.34785 -11.22821 -11.05912 -10.85483 -10.64007 -10.17259 -10.09222 -9.74879 -9.16808 -8.92484 -8.71377 -8.16716 -7.99079 -7.64690 -7.07258 -6.39119 -4.47279 0.27252 0.85024 2.15789 2.49077 2.59090 2.92662 3.10208 3.13709 3.16823 3.26762 3.39959 3.62654 3.74764 3.84280 3.97044 4.03269 4.35662 4.50330 4.79247 4.80167 4.98630 5.11178 5.27053 5.32909 5.45305 5.47891 5.54390 5.67291 5.94337 6.08467 6.21290 6.35081 6.48596 6.73088 6.81233 6.85346 6.91913 7.17368 7.53301 7.56293 7.71766 7.90240 7.97078 8.18426 8.34874 8.72128 8.79029 9.01304 10.08469 10.34019 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028849 B = 0.002076 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.338425 B =13485.633432 C =14014.380903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.071 3.929 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.436 4.436 8 H 0.084 0.916 9 C 0.278 3.722 10 C -0.288 4.288 11 C -0.052 4.052 12 C -0.313 4.313 13 C 0.356 3.644 14 N -0.648 5.648 15 C 0.514 3.486 16 O -0.501 6.501 17 C -0.060 4.060 18 C 0.086 3.914 19 C -0.080 4.080 20 N -0.352 5.352 21 C 0.018 3.982 22 C 0.081 3.919 23 F -0.124 7.124 24 C -0.143 4.143 25 C -0.033 4.033 26 C 0.205 3.795 27 N -0.443 5.443 28 N -0.507 5.507 29 H 0.270 0.730 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.136 0.864 33 H 0.407 0.593 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.188 0.812 37 H 0.172 0.828 38 H 0.154 0.846 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.426 -12.309 -0.335 21.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.153 4.153 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.468 4.468 8 H 0.103 0.897 9 C 0.151 3.849 10 C -0.311 4.311 11 C -0.077 4.077 12 C -0.337 4.337 13 C 0.122 3.878 14 N -0.293 5.293 15 C 0.299 3.701 16 O -0.375 6.375 17 C -0.101 4.101 18 C -0.048 4.048 19 C -0.211 4.211 20 N -0.024 5.024 21 C -0.105 4.105 22 C 0.058 3.942 23 F -0.102 7.102 24 C -0.167 4.167 25 C -0.053 4.053 26 C -0.038 4.038 27 N -0.162 5.162 28 N -0.225 5.225 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.154 0.846 33 H 0.242 0.758 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.205 0.795 37 H 0.189 0.811 38 H 0.172 0.828 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.145 -11.898 -1.116 20.899 hybrid contribution -0.167 -0.021 0.919 0.934 sum -17.312 -11.918 -0.196 21.019 Atomic orbital electron populations 1.70123 1.07189 1.27422 1.29822 1.26029 0.94882 1.00954 0.93426 0.86335 0.80623 0.80999 0.78961 1.19587 1.20180 1.18542 1.19546 0.94464 0.89309 1.43525 0.89748 1.18187 0.86467 0.92041 0.88171 1.21724 0.98742 0.93704 1.16892 1.20838 0.93859 0.96533 0.96456 1.21829 0.94611 0.98157 1.19149 1.18512 0.82912 0.91224 0.95125 1.43153 1.05554 1.13801 1.66761 1.20169 0.88798 0.83846 0.77283 1.90620 1.70497 1.29550 1.46840 1.20018 0.92844 0.92852 1.04384 1.20128 0.95524 0.96631 0.92514 1.22388 1.08365 0.87149 1.03220 1.42441 1.26987 1.13053 1.19963 1.21138 0.98908 0.87853 1.02630 1.16592 0.94909 0.85860 0.96802 1.91553 1.70182 1.54496 1.94018 1.21042 0.97333 1.00744 0.97616 1.20212 0.98024 0.88906 0.98180 1.21042 0.94785 0.97523 0.90412 1.70740 1.22136 1.01732 1.21607 1.68061 1.08313 1.24828 1.21323 0.91898 0.88314 0.88455 0.84624 0.75823 0.87048 0.86813 0.79542 0.81092 0.82822 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.82 11.48 55.55 0.64 -18.18 16 2 C 0.07 1.81 5.49 -17.34 -0.10 1.71 16 3 Si 0.91 18.54 29.56 -169.99 -5.03 13.51 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.44 -11.77 9.13 -37.73 -0.34 -12.11 16 8 H 0.08 2.14 7.85 -52.48 -0.41 1.72 16 9 C 0.28 7.77 6.55 -85.00 -0.56 7.22 16 10 C -0.29 -7.39 9.83 -38.66 -0.38 -7.77 16 11 C -0.05 -1.27 10.15 -39.39 -0.40 -1.67 16 12 C -0.31 -7.84 8.90 -38.89 -0.35 -8.19 16 13 C 0.36 8.93 7.51 -154.97 -1.16 7.77 16 14 N -0.65 -12.89 5.41 -11.40 -0.06 -12.95 16 15 C 0.51 9.35 7.72 -10.99 -0.08 9.26 16 16 O -0.50 -11.07 12.23 5.57 0.07 -11.00 16 17 C -0.06 -0.74 6.26 -29.03 -0.18 -0.92 16 18 C 0.09 1.19 5.84 -82.97 -0.48 0.70 16 19 C -0.08 -0.86 11.63 -16.43 -0.19 -1.05 16 20 N -0.35 -3.92 2.95 -62.59 -0.18 -4.10 16 21 C 0.02 0.15 10.92 -16.53 -0.18 -0.03 16 22 C 0.08 0.67 7.25 -39.79 -0.29 0.38 16 23 F -0.12 -1.01 17.26 2.25 0.04 -0.97 16 24 C -0.14 -1.11 10.05 -39.48 -0.40 -1.51 16 25 C -0.03 -0.33 10.10 -39.37 -0.40 -0.73 16 26 C 0.21 2.72 7.81 -156.04 -1.22 1.51 16 27 N -0.44 -7.18 10.69 -9.01 -0.10 -7.27 16 28 N -0.51 -13.95 7.91 -10.26 -0.08 -14.03 16 29 H 0.27 6.32 8.29 -40.82 -0.34 5.99 16 30 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 31 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 32 H 0.14 3.39 5.17 -52.91 -0.27 3.12 16 33 H 0.41 7.03 8.82 -40.82 -0.36 6.67 16 34 H 0.11 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.17 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 348.66 15.07 5.25 5.25 Total: -1.00 -35.63 348.66 -9.72 -45.35 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -3.56 Total: 9.80 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -6.71 Total: -5.42 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.21 Total: -56.53 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -11.00 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.04 Total: -0.97 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.63 -9.72 -45.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536309823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.024 kcal (2) G-P(sol) polarization free energy of solvation -35.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds