Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86803 * 119.99711 * 2 1 4 4 H 1.48499 * 109.47035 * 274.99698 * 3 2 1 5 5 H 1.48500 * 109.47377 * 34.99414 * 3 2 1 6 6 H 1.48503 * 109.47268 * 154.99527 * 3 2 1 7 7 C 1.40028 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99686 * 174.86120 * 7 2 1 9 9 C 1.41334 * 119.99972 * 354.85656 * 7 2 1 10 10 C 1.40617 * 119.78575 * 185.16150 * 9 7 2 11 11 C 1.38305 * 119.12642 * 179.97438 * 10 9 7 12 12 C 1.38696 * 118.66826 * 0.02562 * 11 10 9 13 13 C 1.39627 * 119.50164 * 359.97438 * 12 11 10 14 14 N 1.39271 * 119.58006 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99558 * 339.11488 * 14 13 12 16 16 O 1.21271 * 120.00298 * 3.71372 * 15 14 13 17 17 C 1.50699 * 119.99767 * 183.71621 * 15 14 13 18 18 C 1.50703 * 109.47459 * 179.97438 * 17 15 14 19 19 C 1.35131 * 125.69489 * 124.99545 * 18 17 15 20 20 N 1.36812 * 107.18795 * 180.02562 * 19 18 17 21 21 C 1.36598 * 132.54437 * 179.97438 * 20 19 18 22 22 C 1.35132 * 120.57313 * 179.97438 * 21 20 19 23 23 F 1.35104 * 119.87641 * 179.97438 * 22 21 20 24 24 C 1.40616 * 120.24633 * 0.04849 * 22 21 20 25 25 C 1.36010 * 119.68756 * 359.97152 * 24 22 21 26 26 C 1.37033 * 107.01273 * 359.97438 * 20 19 18 27 27 N 1.32620 * 108.03249 * 359.74098 * 26 20 19 28 28 N 1.31934 * 120.84796 * 0.26057 * 13 12 11 29 29 H 0.97002 * 119.99882 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.43718 * 0.02562 * 10 9 7 31 31 H 1.07999 * 120.66437 * 179.97438 * 11 10 9 32 32 H 1.08004 * 120.25084 * 180.02562 * 12 11 10 33 33 H 0.96993 * 120.00263 * 159.11436 * 14 13 12 34 34 H 1.09005 * 109.47221 * 299.99909 * 17 15 14 35 35 H 1.08998 * 109.47454 * 59.99567 * 17 15 14 36 36 H 1.07999 * 126.40423 * 0.04086 * 19 18 17 37 37 H 1.07995 * 119.71558 * 0.02562 * 21 20 19 38 38 H 1.08001 * 120.15351 * 179.97438 * 24 22 21 39 39 H 1.08000 * 120.31117 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3832 2.1075 -1.3947 5 1 1.4956 2.6200 0.8029 6 1 3.5878 1.4122 0.5918 7 6 2.0076 -1.2127 0.0005 8 1 3.0844 -1.2145 -0.0832 9 6 1.3052 -2.4341 0.1108 10 6 2.0171 -3.6418 0.2205 11 6 1.3160 -4.8291 0.3282 12 6 -0.0702 -4.7860 0.3237 13 6 -0.7195 -3.5550 0.2119 14 7 -2.1115 -3.5099 0.2067 15 6 -2.8201 -4.6110 -0.1123 16 8 -2.2485 -5.6583 -0.3289 17 6 -4.3229 -4.5407 -0.1998 18 6 -4.8686 -5.8958 -0.5702 19 6 -5.7999 -6.5872 0.1231 20 7 -6.0136 -7.7609 -0.5465 21 6 -6.8350 -8.8254 -0.3054 22 6 -6.8533 -9.8835 -1.1457 23 9 -7.6708 -10.9292 -0.8935 24 6 -6.0236 -9.9010 -2.2808 25 6 -5.2014 -8.8468 -2.5305 26 6 -5.1947 -7.7506 -1.6451 27 7 -4.5169 -6.6107 -1.6412 28 7 -0.0314 -2.4344 0.1056 29 1 -0.4850 0.8401 -0.0004 30 1 3.0971 -3.6422 0.2214 31 1 1.8376 -5.7710 0.4133 32 1 -0.6432 -5.6978 0.4068 33 1 -2.5709 -2.6860 0.4325 34 1 -4.7292 -4.2363 0.7649 35 1 -4.6091 -3.8140 -0.9601 36 1 -6.2850 -6.2719 1.0351 37 1 -7.4759 -8.8210 0.5638 38 1 -6.0391 -10.7477 -2.9512 39 1 -4.5602 -8.8494 -3.3996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536309823.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = 45.153331 kcal Electronic energy + Delta-G solvation = -27214.233523 eV Core-core repulsion = 23037.704437 eV Total energy + Delta-G solvation = -4176.529087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.08707 -43.85964 -41.33146 -39.52320 -38.17975 -35.94679 -35.08008 -34.77451 -33.01307 -32.31154 -31.04412 -30.10037 -28.82530 -27.32001 -24.85767 -23.85589 -23.75870 -23.46781 -22.01290 -21.10259 -19.46913 -19.27983 -18.77521 -18.47180 -17.80294 -17.36918 -17.22961 -16.66837 -16.49485 -16.22949 -16.17980 -16.06773 -15.62317 -15.34450 -15.18445 -14.72903 -14.55807 -14.42650 -14.21760 -13.86487 -13.79286 -13.23100 -12.89444 -12.88036 -12.65555 -12.64408 -12.56772 -12.34040 -12.05178 -11.83638 -11.52403 -11.09267 -11.00923 -10.44353 -9.95946 -9.64828 -9.62745 -8.97847 -8.93789 -8.29763 -6.49637 -0.41556 0.10941 0.77779 1.10433 1.41087 1.43845 1.53474 1.58708 1.63698 1.82494 2.21586 2.25869 2.44478 2.88443 2.92989 3.09440 3.34838 3.71520 3.78986 3.90441 3.94727 4.00977 4.29316 4.37088 4.45270 4.54879 4.64689 4.68806 4.79746 4.82089 4.88067 4.92251 4.95751 5.03931 5.26374 5.39362 5.50522 5.64358 5.69851 5.94909 5.98838 6.10023 6.29154 6.58154 6.80046 6.86367 6.96643 7.33343 8.11602 8.46579 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028849 B = 0.002076 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.338425 B =13485.633432 C =14014.380903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.752 5.752 2 C 0.025 3.975 3 Si 0.989 3.011 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.466 4.466 8 H 0.090 0.910 9 C 0.243 3.757 10 C -0.309 4.309 11 C -0.053 4.053 12 C -0.330 4.330 13 C 0.348 3.652 14 N -0.644 5.644 15 C 0.511 3.489 16 O -0.542 6.542 17 C -0.044 4.044 18 C 0.048 3.952 19 C -0.065 4.065 20 N -0.356 5.356 21 C 0.020 3.980 22 C 0.076 3.924 23 F -0.120 7.120 24 C -0.121 4.121 25 C -0.060 4.060 26 C 0.184 3.816 27 N -0.504 5.504 28 N -0.531 5.531 29 H 0.280 0.720 30 H 0.112 0.888 31 H 0.126 0.874 32 H 0.136 0.864 33 H 0.418 0.582 34 H 0.159 0.841 35 H 0.129 0.871 36 H 0.230 0.770 37 H 0.206 0.794 38 H 0.184 0.816 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.305 -12.287 0.501 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.374 5.374 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.190 1.190 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.498 4.498 8 H 0.108 0.892 9 C 0.116 3.884 10 C -0.331 4.331 11 C -0.077 4.077 12 C -0.355 4.355 13 C 0.113 3.887 14 N -0.290 5.290 15 C 0.300 3.700 16 O -0.418 6.418 17 C -0.085 4.085 18 C -0.085 4.085 19 C -0.196 4.196 20 N -0.028 5.028 21 C -0.103 4.103 22 C 0.054 3.946 23 F -0.099 7.099 24 C -0.145 4.145 25 C -0.080 4.080 26 C -0.060 4.060 27 N -0.224 5.224 28 N -0.251 5.251 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.255 0.745 34 H 0.177 0.823 35 H 0.147 0.853 36 H 0.247 0.753 37 H 0.223 0.777 38 H 0.201 0.799 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -19.067 -11.890 -0.272 22.472 hybrid contribution 0.290 -0.205 0.637 0.729 sum -18.777 -12.095 0.365 22.338 Atomic orbital electron populations 1.70187 1.08735 1.29129 1.29303 1.26963 0.95849 1.04367 0.92468 0.85100 0.79086 0.75723 0.79183 1.18984 1.18971 1.18116 1.19926 0.95034 0.90240 1.44593 0.89197 1.18719 0.87341 0.93349 0.88947 1.21885 0.99485 0.93671 1.18094 1.21184 0.93907 0.97437 0.95181 1.22031 0.95158 0.98343 1.19922 1.18914 0.85093 0.90774 0.93912 1.43231 1.03711 1.15156 1.66941 1.21302 0.91119 0.82387 0.75235 1.90582 1.71923 1.30987 1.48311 1.20074 0.87702 0.93276 1.07402 1.20431 0.97356 0.97510 0.93158 1.22957 1.07032 0.86171 1.03449 1.42601 1.26971 1.13773 1.19462 1.21675 0.98243 0.86843 1.03492 1.16697 0.94942 0.86006 0.96945 1.91570 1.70045 1.54297 1.93991 1.21364 0.95318 1.00472 0.97375 1.20397 0.99738 0.89146 0.98730 1.21423 0.95184 0.97639 0.91717 1.70627 1.24445 1.03652 1.23675 1.68114 1.08487 1.25818 1.22672 0.90899 0.87020 0.85600 0.84662 0.74454 0.82317 0.85310 0.75319 0.77720 0.79913 0.81338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.40 11.48 21.84 0.25 -39.15 16 2 C 0.03 1.29 5.49 85.29 0.47 1.76 16 3 Si 0.99 37.76 29.56 68.60 2.03 39.79 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 6 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 7 C -0.47 -25.68 9.13 23.47 0.21 -25.47 16 8 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 9 C 0.24 14.01 6.55 40.21 0.26 14.28 16 10 C -0.31 -16.30 9.83 22.87 0.22 -16.07 16 11 C -0.05 -2.62 10.15 22.40 0.23 -2.39 16 12 C -0.33 -17.03 8.90 22.71 0.20 -16.83 16 13 C 0.35 17.98 7.51 133.23 1.00 18.98 16 14 N -0.64 -26.00 5.41 -308.39 -1.67 -27.67 16 15 C 0.51 18.73 7.72 87.66 0.68 19.41 16 16 O -0.54 -24.65 12.23 -3.00 -0.04 -24.69 16 17 C -0.04 -1.04 6.26 29.10 0.18 -0.85 16 18 C 0.05 1.29 5.84 41.59 0.24 1.54 16 19 C -0.06 -1.25 11.63 83.20 0.97 -0.28 16 20 N -0.36 -7.33 2.95 -351.93 -1.04 -8.36 16 21 C 0.02 0.28 10.92 83.24 0.91 1.19 16 22 C 0.08 1.07 7.25 22.13 0.16 1.23 16 23 F -0.12 -1.62 17.26 44.97 0.78 -0.84 16 24 C -0.12 -1.67 10.05 22.33 0.22 -1.45 16 25 C -0.06 -1.18 10.10 22.41 0.23 -0.95 16 26 C 0.18 4.89 7.81 134.10 1.05 5.93 16 27 N -0.50 -16.71 10.69 -182.41 -1.95 -18.66 16 28 N -0.53 -30.14 7.91 -186.36 -1.47 -31.62 16 29 H 0.28 13.07 8.29 -92.71 -0.77 12.31 16 30 H 0.11 5.39 8.06 -2.91 -0.02 5.37 16 31 H 0.13 5.35 8.06 -2.91 -0.02 5.33 16 32 H 0.14 6.99 5.17 -9.69 -0.05 6.94 16 33 H 0.42 14.49 8.82 -92.71 -0.82 13.67 16 34 H 0.16 2.11 8.10 -2.38 -0.02 2.09 16 35 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.23 2.07 8.06 -2.91 -0.02 2.04 16 37 H 0.21 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.17 2.87 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -82.02 348.66 4.41 -77.62 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: 0.28 Total: 33.56 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 7.24 Total: 0.03 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -5.88 Total: -125.46 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.04 Total: -24.69 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.78 Total: -0.84 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Total: -82.02 4.41 -77.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536309823.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.772 kcal (2) G-P(sol) polarization free energy of solvation -82.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds