Wall clock time and date at job start Sat Apr 11 2020 05:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38085 * 120.02918 * 2 1 4 4 C 1.38501 * 120.05418 * 180.25125 * 3 2 1 5 5 F 1.35095 * 119.94637 * 179.74594 * 4 3 2 6 6 C 1.38547 * 120.10798 * 359.77146 * 4 3 2 7 7 C 1.38030 * 120.05476 * 359.97438 * 6 4 3 8 8 C 1.38956 * 120.02632 * 179.76964 * 2 1 3 9 9 N 1.39748 * 120.05634 * 359.97438 * 8 2 1 10 10 C 1.36921 * 119.99904 * 89.72890 * 9 8 2 11 11 H 1.07998 * 120.00071 * 185.54953 * 10 9 8 12 12 C 1.38961 * 119.99864 * 5.54871 * 10 9 8 13 13 N 1.31383 * 120.00286 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99864 * 180.02562 * 12 10 9 15 15 H 1.48507 * 109.47505 * 59.99981 * 14 12 10 16 16 H 1.48500 * 109.47303 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47584 * 299.99844 * 14 12 10 18 18 C 1.34780 * 120.00381 * 269.73306 * 9 8 2 19 19 O 1.21580 * 120.00149 * 185.07472 * 18 9 8 20 20 C 1.47723 * 119.99748 * 5.07115 * 18 9 8 21 21 C 1.39979 * 125.70625 * 174.48850 * 20 18 9 22 22 C 1.38560 * 107.59280 * 180.02562 * 21 20 18 23 23 N 1.34118 * 132.32321 * 179.97438 * 22 21 20 24 24 C 1.31140 * 120.84063 * 179.67812 * 23 22 21 25 25 C 1.40342 * 120.28821 * 0.64159 * 24 23 22 26 26 C 1.35463 * 119.46976 * 359.39877 * 25 24 23 27 27 N 1.36658 * 119.14254 * 0.27407 * 26 25 24 28 28 N 1.32443 * 125.70650 * 354.52949 * 20 18 9 29 29 H 1.09005 * 109.46946 * 270.23381 * 1 2 3 30 30 H 1.09003 * 109.46850 * 30.23019 * 1 2 3 31 31 H 1.08995 * 109.46937 * 150.23187 * 1 2 3 32 32 H 1.07996 * 119.97095 * 0.02562 * 3 2 1 33 33 H 1.08006 * 119.97134 * 179.97438 * 6 4 3 34 34 H 1.08000 * 120.02864 * 179.97438 * 7 6 4 35 35 H 0.96995 * 120.00258 * 180.02562 * 13 12 10 36 36 H 1.08004 * 126.20195 * 0.02562 * 21 20 18 37 37 H 1.08000 * 119.86014 * 180.33604 * 24 23 22 38 38 H 1.08008 * 120.26183 * 179.66554 * 25 24 23 39 39 H 1.08000 * 120.42983 * 180.29375 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1955 0.0000 4 6 3.5830 1.1961 -0.0053 5 9 4.2569 2.3670 -0.0104 6 6 4.2786 -0.0021 -0.0057 7 6 3.5924 -1.1998 -0.0005 8 6 2.2023 -1.2031 0.0048 9 7 1.5053 -2.4143 0.0102 10 6 1.1586 -3.0099 -1.1729 11 1 0.5434 -3.8976 -1.1707 12 6 1.5982 -2.4722 -2.3765 13 7 2.3469 -1.3926 -2.3792 14 14 1.1245 -3.2843 -3.9906 15 1 -0.3546 -3.2979 -4.1227 16 1 1.7148 -2.5222 -5.1201 17 1 1.6361 -4.6782 -4.0124 18 6 1.1744 -2.9962 1.1800 19 8 0.6505 -4.0934 1.1865 20 6 1.4482 -2.3010 2.4543 21 6 1.0593 -2.7409 3.7250 22 6 1.5077 -1.8084 4.6465 23 7 1.4088 -1.7389 5.9822 24 6 1.9331 -0.7354 6.6439 25 6 2.5978 0.2937 5.9593 26 6 2.7043 0.2362 4.6101 27 7 2.1554 -0.8232 3.9438 28 7 2.1021 -1.1567 2.5856 29 1 -0.3633 0.0042 1.0277 30 1 -0.3633 0.8880 -0.5174 31 1 -0.3633 -0.8920 -0.5102 32 1 1.6581 2.1308 0.0004 33 1 5.3586 0.0009 -0.0103 34 1 4.1350 -2.1336 -0.0013 35 1 2.6535 -1.0171 -3.2193 36 1 0.5094 -3.6437 3.9469 37 1 1.8488 -0.6982 7.7200 38 1 3.0248 1.1227 6.5043 39 1 3.2167 1.0172 4.0681 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001543812893.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:54 Heat of formation + Delta-G solvation = 76.180535 kcal Electronic energy + Delta-G solvation = -29981.428618 eV Core-core repulsion = 25806.244972 eV Total energy + Delta-G solvation = -4175.183646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.64445 -43.24861 -41.37033 -39.31087 -38.57001 -36.46846 -34.95341 -33.94877 -33.38269 -32.02893 -30.27400 -30.06921 -28.06320 -27.48816 -25.68045 -24.72214 -23.76716 -23.20338 -22.49592 -20.79380 -19.72517 -19.13240 -18.82107 -17.92156 -17.48542 -17.37026 -16.99421 -16.96326 -16.40079 -16.32673 -15.96205 -15.46359 -15.41939 -15.23596 -14.81323 -14.46355 -14.37669 -14.24178 -14.06561 -13.79092 -13.71816 -13.48229 -13.39431 -12.95414 -12.84061 -12.54314 -12.31085 -12.22134 -12.15079 -12.08624 -11.98747 -11.31518 -10.93899 -10.81802 -10.47141 -10.08108 -9.56114 -9.31556 -8.98343 -8.03314 -6.04102 -0.38980 -0.16784 0.53459 0.65597 0.84760 1.13106 1.42284 1.46140 1.51437 2.16146 2.31082 2.50982 2.61617 2.92160 3.01957 3.11188 3.13202 3.52511 3.64441 3.85377 4.00641 4.09193 4.13756 4.33790 4.37507 4.45420 4.62853 4.63308 4.70791 4.71700 4.76816 4.94545 5.10462 5.17762 5.22779 5.32203 5.36436 5.42638 5.51559 5.55981 5.84452 5.94408 6.15549 6.27108 6.44682 6.67426 6.95778 7.25874 7.75539 8.56397 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012637 B = 0.005203 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.182438 B = 5380.027209 C = 6990.932705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.046 4.046 3 C -0.143 4.143 4 C 0.076 3.924 5 F -0.150 7.150 6 C -0.144 4.144 7 C -0.061 4.061 8 C 0.232 3.768 9 N -0.390 5.390 10 C -0.345 4.345 11 H 0.091 0.909 12 C 0.011 3.989 13 N -0.855 5.855 14 Si 0.994 3.006 15 H -0.269 1.269 16 H -0.269 1.269 17 H -0.274 1.274 18 C 0.498 3.502 19 O -0.607 6.607 20 C 0.074 3.926 21 C -0.249 4.249 22 C 0.248 3.752 23 N -0.495 5.495 24 C 0.187 3.813 25 C -0.194 4.194 26 C 0.135 3.865 27 N -0.312 5.312 28 N -0.278 5.278 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.277 0.723 36 H 0.154 0.846 37 H 0.229 0.771 38 H 0.222 0.778 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 11.539 13.400 18.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.048 4.048 3 C -0.162 4.162 4 C 0.057 3.943 5 F -0.129 7.129 6 C -0.164 4.164 7 C -0.081 4.081 8 C 0.140 3.860 9 N -0.103 5.103 10 C -0.471 4.471 11 H 0.109 0.891 12 C -0.194 4.194 13 N -0.490 5.490 14 Si 0.816 3.184 15 H -0.194 1.194 16 H -0.194 1.194 17 H -0.199 1.199 18 C 0.287 3.713 19 O -0.492 6.492 20 C -0.084 4.084 21 C -0.281 4.281 22 C 0.021 3.979 23 N -0.208 5.208 24 C 0.004 3.996 25 C -0.218 4.218 26 C 0.002 3.998 27 N -0.084 5.084 28 N -0.108 5.108 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.111 0.889 35 H 0.089 0.911 36 H 0.171 0.829 37 H 0.245 0.755 38 H 0.239 0.761 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.761 11.255 12.699 17.381 hybrid contribution -0.120 -0.753 -1.209 1.430 sum 3.641 10.502 11.490 15.986 Atomic orbital electron populations 1.20563 0.91711 1.02565 1.00774 1.19446 0.95570 0.91523 0.98282 1.20606 0.92121 0.97987 1.05484 1.17316 0.89916 0.80518 1.06573 1.91402 1.80572 1.46302 1.94616 1.20636 1.00036 0.90450 1.05230 1.20476 0.92936 0.96699 0.98036 1.16961 0.90238 0.84201 0.94564 1.41301 1.46027 1.17978 1.04998 1.19843 1.32773 1.12247 0.82258 0.89096 1.26033 0.95163 0.96342 1.01907 1.70001 1.31295 1.19197 1.28536 0.84979 0.78783 0.78129 0.76460 1.19423 1.19391 1.19900 1.16980 0.86357 0.86164 0.81792 1.90585 1.50645 1.21674 1.86321 1.22017 0.97738 0.93581 0.95071 1.20830 1.14458 1.04111 0.88695 1.20400 0.97174 0.90753 0.89555 1.68335 1.22526 1.27566 1.02339 1.24430 0.86193 0.85855 1.03132 1.22481 1.03932 1.04006 0.91333 1.22909 0.94008 0.88840 0.93996 1.47606 1.36377 1.17338 1.07129 1.78586 1.26593 1.16096 0.89499 0.92687 0.90112 0.93356 0.84157 0.84425 0.88931 0.91103 0.82868 0.75478 0.76103 0.78407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.02 9.77 71.24 0.70 -3.32 16 2 C -0.05 -1.96 4.55 -19.73 -0.09 -2.05 16 3 C -0.14 -5.28 9.67 22.30 0.22 -5.06 16 4 C 0.08 2.77 7.30 22.41 0.16 2.93 16 5 F -0.15 -4.99 17.26 44.97 0.78 -4.21 16 6 C -0.14 -5.47 10.02 22.29 0.22 -5.25 16 7 C -0.06 -2.73 8.19 22.40 0.18 -2.55 16 8 C 0.23 10.84 0.71 38.23 0.03 10.86 16 9 N -0.39 -20.58 1.78 -462.02 -0.82 -21.41 16 10 C -0.34 -18.96 8.87 84.07 0.75 -18.21 16 11 H 0.09 5.29 7.19 -2.91 -0.02 5.27 16 12 C 0.01 0.57 5.44 84.93 0.46 1.03 16 13 N -0.85 -42.27 9.33 21.66 0.20 -42.07 16 14 Si 0.99 40.90 29.55 68.60 2.03 42.93 16 15 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 16 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 C 0.50 26.82 7.60 86.75 0.66 27.48 16 19 O -0.61 -36.09 16.49 -3.97 -0.07 -36.16 16 20 C 0.07 3.45 6.82 41.98 0.29 3.74 16 21 C -0.25 -10.52 10.66 22.77 0.24 -10.28 16 22 C 0.25 8.63 7.90 132.99 1.05 9.68 16 23 N -0.49 -13.34 10.48 -192.59 -2.02 -15.36 16 24 C 0.19 2.64 11.27 85.31 0.96 3.60 16 25 C -0.19 -2.06 10.05 22.14 0.22 -1.83 16 26 C 0.13 2.66 11.30 83.30 0.94 3.60 16 27 N -0.31 -10.10 3.90 -192.52 -0.75 -10.85 16 28 N -0.28 -11.32 9.31 -48.82 -0.45 -11.77 16 29 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.08 2.76 8.09 -2.39 -0.02 2.74 16 31 H 0.05 2.25 6.90 -2.39 -0.02 2.23 16 32 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 33 H 0.14 4.47 8.06 -2.91 -0.02 4.45 16 34 H 0.09 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.28 13.11 8.31 -92.71 -0.77 12.34 16 36 H 0.15 6.49 8.06 -2.91 -0.02 6.46 16 37 H 0.23 0.74 8.06 -2.91 -0.02 0.71 16 38 H 0.22 -0.16 8.06 -2.91 -0.02 -0.19 16 39 H 0.20 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -74.55 344.58 6.99 -67.56 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 1.11 Total: 16.97 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 6.99 Total: 14.36 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -3.85 Total: -101.45 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.07 Total: -36.16 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.78 Total: -4.21 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -74.55 6.99 -67.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001543812893.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.742 kcal (2) G-P(sol) polarization free energy of solvation -74.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds