Wall clock time and date at job start Sat Apr 11 2020 05:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00266 * 2 1 4 4 H 1.48500 * 109.46899 * 269.99808 * 3 2 1 5 5 H 1.48504 * 109.47004 * 29.99818 * 3 2 1 6 6 H 1.48498 * 109.46963 * 149.99427 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99927 * 152.06964 * 7 2 1 9 9 C 1.50701 * 119.99940 * 332.08156 * 7 2 1 10 10 N 1.46502 * 109.47092 * 123.19124 * 9 7 2 11 11 C 1.34774 * 120.00172 * 111.58913 * 10 9 7 12 12 O 1.21643 * 119.99634 * 188.17395 * 11 10 9 13 13 C 1.47164 * 120.00047 * 8.17139 * 11 10 9 14 14 C 1.37781 * 119.93998 * 136.30028 * 13 11 10 15 15 C 1.39840 * 119.92620 * 180.02562 * 14 13 11 16 16 C 1.36309 * 119.82458 * 359.97438 * 15 14 13 17 17 C 1.40774 * 119.71265 * 0.27823 * 16 15 14 18 18 N 1.32823 * 132.74479 * 180.45996 * 17 16 15 19 19 C 1.32368 * 109.74173 * 179.50135 * 18 17 16 20 20 N 1.31392 * 109.62245 * 359.73318 * 19 18 17 21 21 N 1.36561 * 119.87360 * 359.43724 * 17 16 15 22 22 C 1.39916 * 119.99698 * 291.57817 * 10 9 7 23 23 C 1.38884 * 120.04769 * 7.94722 * 22 10 9 24 24 C 1.38109 * 119.95178 * 179.73910 * 23 22 10 25 25 C 1.38479 * 120.04424 * 0.50662 * 24 23 22 26 26 F 1.35103 * 119.95198 * 179.74881 * 25 24 23 27 27 C 1.38479 * 120.10023 * 359.76486 * 25 24 23 28 28 C 1.38105 * 120.04419 * 359.97438 * 27 25 24 29 29 H 0.97002 * 119.99880 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.47163 * 3.18708 * 9 7 2 31 31 H 1.09005 * 109.46849 * 243.18278 * 9 7 2 32 32 H 1.07997 * 120.03579 * 359.97438 * 14 13 11 33 33 H 1.08002 * 120.08940 * 180.02562 * 15 14 13 34 34 H 1.07999 * 120.14890 * 180.02562 * 16 15 14 35 35 H 1.08005 * 125.18881 * 179.70547 * 19 18 17 36 36 H 1.07997 * 120.02422 * 359.97438 * 23 22 10 37 37 H 1.07999 * 119.97726 * 180.25415 * 24 23 22 38 38 H 1.08004 * 119.97926 * 179.97438 * 27 25 24 39 39 H 1.08003 * 120.02292 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 2.9902 -1.2487 -0.4376 9 6 1.3825 -2.4229 0.6122 10 7 1.3290 -3.4924 -0.3877 11 6 2.1036 -4.5862 -0.2467 12 8 2.1721 -5.4029 -1.1456 13 6 2.8665 -4.7925 0.9948 14 6 2.8993 -6.0381 1.5828 15 6 3.6239 -6.2337 2.7627 16 6 4.2958 -5.1903 3.3265 17 6 4.2502 -3.9211 2.7190 18 7 4.7990 -2.7524 3.0305 19 6 4.4618 -1.8453 2.1274 20 7 3.6976 -2.3969 1.2119 21 7 3.5437 -3.7450 1.5638 22 6 0.4735 -3.3782 -1.4890 23 6 -0.2007 -2.1872 -1.7253 24 6 -1.0405 -2.0749 -2.8159 25 6 -1.2185 -3.1521 -3.6677 26 9 -2.0444 -3.0419 -4.7312 27 6 -0.5516 -4.3424 -3.4308 28 6 0.2932 -4.4573 -2.3444 29 1 -0.4850 0.8401 -0.0004 30 1 0.3726 -2.1896 0.9491 31 1 1.9827 -2.7495 1.4615 32 1 2.3654 -6.8623 1.1334 33 1 3.6518 -7.2090 3.2256 34 1 4.8574 -5.3355 4.2375 35 1 4.7677 -0.8095 2.1412 36 1 -0.0655 -1.3482 -1.0588 37 1 -1.5618 -1.1476 -3.0024 38 1 -0.6922 -5.1815 -4.0962 39 1 0.8129 -5.3859 -2.1597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565591809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:03 Heat of formation + Delta-G solvation = 146.567249 kcal Electronic energy + Delta-G solvation = -29821.998978 eV Core-core repulsion = 25649.867529 eV Total energy + Delta-G solvation = -4172.131449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.21124 -42.57387 -40.14100 -37.98438 -37.02081 -35.45623 -33.43335 -33.07795 -30.75747 -30.16380 -29.85709 -28.97029 -27.32322 -24.80892 -23.46679 -23.23727 -22.86696 -21.95596 -21.21503 -19.23743 -17.98924 -17.40532 -17.16014 -16.91176 -16.44664 -16.22535 -15.97911 -15.61956 -15.09363 -14.93705 -14.78787 -14.53139 -13.87671 -13.82184 -13.48234 -13.04522 -12.82666 -12.61056 -12.56784 -12.27871 -12.09882 -12.02915 -11.93310 -11.70223 -11.30131 -11.25655 -11.04024 -10.63437 -10.43701 -10.21869 -9.80528 -9.47053 -9.29480 -9.14753 -8.96732 -8.49032 -8.22070 -7.99480 -7.04530 -6.50813 -4.47625 0.41125 1.14528 1.79140 2.13341 2.24387 2.80551 3.06465 3.19255 3.19714 3.25062 3.34933 3.55527 4.10329 4.14334 4.36952 4.55966 4.63228 4.83274 4.84911 4.99680 5.07819 5.30614 5.41609 5.54489 5.66293 5.78712 5.95529 6.06556 6.20343 6.22732 6.37070 6.49813 6.51703 6.65164 6.75199 6.85839 6.93914 6.98800 7.18799 7.23528 7.35679 7.73577 7.84218 8.06519 8.23222 8.26704 8.48580 8.72220 9.13294 10.43847 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010327 B = 0.005666 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.562326 B = 4940.444433 C = 7343.064032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.063 3.937 3 Si 0.896 3.104 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.484 4.484 8 H 0.081 0.919 9 C 0.189 3.811 10 N -0.504 5.504 11 C 0.543 3.457 12 O -0.529 6.529 13 C 0.119 3.881 14 C -0.112 4.112 15 C -0.073 4.073 16 C -0.091 4.091 17 C 0.262 3.738 18 N -0.546 5.546 19 C 0.210 3.790 20 N -0.238 5.238 21 N -0.288 5.288 22 C 0.141 3.859 23 C -0.122 4.122 24 C -0.147 4.147 25 C 0.054 3.946 26 F -0.157 7.157 27 C -0.158 4.158 28 C -0.145 4.145 29 H 0.277 0.723 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.219 0.781 36 H 0.235 0.765 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.252 -8.391 5.318 10.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.139 4.139 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.523 4.523 8 H 0.099 0.901 9 C 0.072 3.928 10 N -0.223 5.223 11 C 0.331 3.669 12 O -0.410 6.410 13 C 0.008 3.992 14 C -0.135 4.135 15 C -0.099 4.099 16 C -0.112 4.112 17 C 0.007 3.993 18 N -0.276 5.276 19 C -0.089 4.089 20 N -0.064 5.064 21 N -0.066 5.066 22 C 0.046 3.954 23 C -0.141 4.141 24 C -0.166 4.166 25 C 0.034 3.966 26 F -0.136 7.136 27 C -0.178 4.178 28 C -0.165 4.165 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.180 0.820 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.235 0.765 36 H 0.248 0.752 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.128 -7.954 4.587 9.700 hybrid contribution 0.088 0.909 -0.279 0.955 sum 3.216 -7.044 4.308 8.861 Atomic orbital electron populations 1.68855 1.06502 1.28097 1.47494 1.25112 0.94646 1.00407 0.93776 0.86516 0.80454 0.82155 0.78696 1.20333 1.20781 1.19241 1.21359 1.01955 0.91580 1.37370 0.90116 1.20837 0.99129 0.85061 0.87780 1.47062 1.34503 1.17811 1.22916 1.17814 0.80841 0.82728 0.85525 1.90548 1.65031 1.46207 1.39206 1.20385 0.97030 0.86338 0.95491 1.21221 1.01505 0.94378 0.96435 1.21083 0.94755 0.99617 0.94412 1.20381 1.01665 0.87777 1.01409 1.21887 0.93640 0.95897 0.87844 1.70770 1.29093 0.97819 1.29903 1.26356 0.92384 1.00947 0.89240 1.80427 1.20439 0.82831 1.22747 1.48865 1.31569 1.08581 1.17577 1.18027 0.93351 0.94770 0.89219 1.23819 0.91595 1.00646 0.98034 1.21000 1.02015 0.97568 0.96036 1.17951 0.94964 0.96496 0.87144 1.91394 1.70549 1.96832 1.54844 1.20811 1.00205 0.96527 1.00228 1.22141 0.99431 1.00688 0.94218 0.91085 0.92317 0.92387 0.81979 0.82989 0.82801 0.76464 0.75161 0.85764 0.85967 0.81439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -20.74 9.97 55.43 0.55 -20.18 16 2 C 0.06 1.47 4.97 -17.82 -0.09 1.38 16 3 Si 0.90 18.57 29.62 -169.99 -5.04 13.53 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.48 -11.39 6.06 -34.44 -0.21 -11.60 16 8 H 0.08 2.00 6.82 -52.48 -0.36 1.64 16 9 C 0.19 4.26 4.73 -5.19 -0.02 4.23 16 10 N -0.50 -11.03 2.79 -116.01 -0.32 -11.36 16 11 C 0.54 10.92 7.21 -12.64 -0.09 10.83 16 12 O -0.53 -10.97 13.52 5.24 0.07 -10.90 16 13 C 0.12 2.04 5.98 -82.06 -0.49 1.55 16 14 C -0.11 -1.38 9.63 -39.15 -0.38 -1.76 16 15 C -0.07 -0.69 10.04 -39.68 -0.40 -1.09 16 16 C -0.09 -1.03 10.09 -39.32 -0.40 -1.43 16 17 C 0.26 4.19 7.88 -156.36 -1.23 2.96 16 18 N -0.55 -9.34 11.24 -13.99 -0.16 -9.49 16 19 C 0.21 3.69 12.98 -92.00 -1.19 2.49 16 20 N -0.24 -4.72 5.92 29.25 0.17 -4.55 16 21 N -0.29 -5.20 2.77 -8.82 -0.02 -5.23 16 22 C 0.14 3.16 6.37 -83.69 -0.53 2.63 16 23 C -0.12 -2.80 8.80 -39.39 -0.35 -3.15 16 24 C -0.15 -3.08 10.02 -39.54 -0.40 -3.47 16 25 C 0.05 1.08 7.30 -39.40 -0.29 0.80 16 26 F -0.16 -3.00 17.27 2.25 0.04 -2.96 16 27 C -0.16 -3.03 10.02 -39.54 -0.40 -3.43 16 28 C -0.15 -3.00 8.95 -39.39 -0.35 -3.35 16 29 H 0.28 6.30 8.31 -40.82 -0.34 5.97 16 30 H 0.06 1.43 7.00 -51.93 -0.36 1.07 16 31 H 0.06 1.28 3.55 -60.39 -0.21 1.06 16 32 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 34 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.22 3.19 8.06 -52.48 -0.42 2.77 16 36 H 0.23 5.63 1.83 -67.19 -0.12 5.50 16 37 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 38 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 39 H 0.17 3.41 4.80 -54.68 -0.26 3.15 16 LS Contribution 326.09 15.07 4.91 4.91 Total: -1.00 -27.80 326.09 -9.60 -37.40 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -2.99 Total: 11.24 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -6.81 Total: -2.41 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.22 Total: -50.81 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.07 Total: -10.90 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.04 Total: -2.96 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.04 Total: 13.53 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.80 -9.60 -37.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565591809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.963 kcal (2) G-P(sol) polarization free energy of solvation -27.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds