Wall clock time and date at job start Sat Apr 11 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00266 * 2 1 4 4 H 1.48500 * 109.46899 * 269.99808 * 3 2 1 5 5 H 1.48504 * 109.47004 * 29.99818 * 3 2 1 6 6 H 1.48498 * 109.46963 * 149.99427 * 3 2 1 7 7 C 1.37877 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99927 * 152.06964 * 7 2 1 9 9 C 1.50701 * 119.99940 * 332.08156 * 7 2 1 10 10 N 1.46502 * 109.47092 * 123.19124 * 9 7 2 11 11 C 1.34774 * 120.00172 * 111.58913 * 10 9 7 12 12 O 1.21643 * 119.99634 * 188.17395 * 11 10 9 13 13 C 1.47164 * 120.00047 * 8.17139 * 11 10 9 14 14 C 1.37781 * 119.93998 * 136.30028 * 13 11 10 15 15 C 1.39840 * 119.92620 * 180.02562 * 14 13 11 16 16 C 1.36309 * 119.82458 * 359.97438 * 15 14 13 17 17 C 1.40774 * 119.71265 * 0.27823 * 16 15 14 18 18 N 1.32823 * 132.74479 * 180.45996 * 17 16 15 19 19 C 1.32368 * 109.74173 * 179.50135 * 18 17 16 20 20 N 1.31392 * 109.62245 * 359.73318 * 19 18 17 21 21 N 1.36561 * 119.87360 * 359.43724 * 17 16 15 22 22 C 1.39916 * 119.99698 * 291.57817 * 10 9 7 23 23 C 1.38884 * 120.04769 * 7.94722 * 22 10 9 24 24 C 1.38109 * 119.95178 * 179.73910 * 23 22 10 25 25 C 1.38479 * 120.04424 * 0.50662 * 24 23 22 26 26 F 1.35103 * 119.95198 * 179.74881 * 25 24 23 27 27 C 1.38479 * 120.10023 * 359.76486 * 25 24 23 28 28 C 1.38105 * 120.04419 * 359.97438 * 27 25 24 29 29 H 0.97002 * 119.99880 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.47163 * 3.18708 * 9 7 2 31 31 H 1.09005 * 109.46849 * 243.18278 * 9 7 2 32 32 H 1.07997 * 120.03579 * 359.97438 * 14 13 11 33 33 H 1.08002 * 120.08940 * 180.02562 * 15 14 13 34 34 H 1.07999 * 120.14890 * 180.02562 * 16 15 14 35 35 H 1.08005 * 125.18881 * 179.70547 * 19 18 17 36 36 H 1.07997 * 120.02422 * 359.97438 * 23 22 10 37 37 H 1.07999 * 119.97726 * 180.25415 * 24 23 22 38 38 H 1.08004 * 119.97926 * 179.97438 * 27 25 24 39 39 H 1.08003 * 120.02292 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 2.9902 -1.2487 -0.4376 9 6 1.3825 -2.4229 0.6122 10 7 1.3290 -3.4924 -0.3877 11 6 2.1036 -4.5862 -0.2467 12 8 2.1721 -5.4029 -1.1456 13 6 2.8665 -4.7925 0.9948 14 6 2.8993 -6.0381 1.5828 15 6 3.6239 -6.2337 2.7627 16 6 4.2958 -5.1903 3.3265 17 6 4.2502 -3.9211 2.7190 18 7 4.7990 -2.7524 3.0305 19 6 4.4618 -1.8453 2.1274 20 7 3.6976 -2.3969 1.2119 21 7 3.5437 -3.7450 1.5638 22 6 0.4735 -3.3782 -1.4890 23 6 -0.2007 -2.1872 -1.7253 24 6 -1.0405 -2.0749 -2.8159 25 6 -1.2185 -3.1521 -3.6677 26 9 -2.0444 -3.0419 -4.7312 27 6 -0.5516 -4.3424 -3.4308 28 6 0.2932 -4.4573 -2.3444 29 1 -0.4850 0.8401 -0.0004 30 1 0.3726 -2.1896 0.9491 31 1 1.9827 -2.7495 1.4615 32 1 2.3654 -6.8623 1.1334 33 1 3.6518 -7.2090 3.2256 34 1 4.8574 -5.3355 4.2375 35 1 4.7677 -0.8095 2.1412 36 1 -0.0655 -1.3482 -1.0588 37 1 -1.5618 -1.1476 -3.0024 38 1 -0.6922 -5.1815 -4.0962 39 1 0.8129 -5.3859 -2.1597 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565591809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:02 Heat of formation + Delta-G solvation = 134.281377 kcal Electronic energy + Delta-G solvation = -29822.531734 eV Core-core repulsion = 25649.867529 eV Total energy + Delta-G solvation = -4172.664205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.108 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.77604 -43.80404 -41.68696 -39.41032 -38.29865 -37.07670 -34.89296 -34.54817 -31.96184 -31.76317 -31.11867 -30.56225 -28.97504 -26.07148 -25.17480 -24.41775 -24.22778 -23.48828 -22.70717 -20.68231 -19.39874 -18.83978 -18.65258 -18.45559 -17.85174 -17.67759 -17.27302 -16.85487 -16.69092 -16.50615 -16.19922 -16.05965 -15.37524 -15.13409 -15.07933 -14.59281 -14.36833 -14.04028 -13.78520 -13.74271 -13.52570 -13.44135 -13.30994 -13.05475 -12.90806 -12.65703 -12.58007 -12.12499 -12.01466 -11.79808 -11.41719 -10.85665 -10.78296 -10.69459 -10.39465 -10.23626 -9.86614 -9.20280 -8.70395 -8.25395 -6.28257 -0.69904 0.08257 0.21892 0.49343 0.99995 1.38630 1.45416 1.50397 1.55657 1.86977 1.89068 2.39127 2.43656 2.82232 2.91801 3.05917 3.18573 3.46035 3.54038 3.90108 4.03756 4.04161 4.05912 4.21033 4.44085 4.48016 4.55278 4.71403 4.86227 4.91939 5.03144 5.07305 5.14180 5.29825 5.31811 5.38956 5.42836 5.54151 5.59689 5.63600 5.73820 6.06711 6.09939 6.38057 6.55497 6.83539 6.94029 7.00910 7.33254 8.67160 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010327 B = 0.005666 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.562326 B = 4940.444433 C = 7343.064032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.027 3.973 3 Si 0.944 3.056 4 H -0.287 1.287 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.483 4.483 8 H 0.063 0.937 9 C 0.206 3.794 10 N -0.517 5.517 11 C 0.543 3.457 12 O -0.543 6.543 13 C 0.061 3.939 14 C -0.074 4.074 15 C -0.049 4.049 16 C -0.081 4.081 17 C 0.247 3.753 18 N -0.561 5.561 19 C 0.205 3.795 20 N -0.290 5.290 21 N -0.296 5.296 22 C 0.122 3.878 23 C -0.154 4.154 24 C -0.151 4.151 25 C 0.053 3.947 26 F -0.150 7.150 27 C -0.146 4.146 28 C -0.149 4.149 29 H 0.277 0.723 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.189 0.811 33 H 0.214 0.786 34 H 0.192 0.808 35 H 0.234 0.766 36 H 0.222 0.778 37 H 0.131 0.869 38 H 0.156 0.844 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.189 -11.325 6.608 13.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.172 4.172 3 Si 0.769 3.231 4 H -0.213 1.213 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.522 4.522 8 H 0.081 0.919 9 C 0.089 3.911 10 N -0.236 5.236 11 C 0.332 3.668 12 O -0.424 6.424 13 C -0.050 4.050 14 C -0.097 4.097 15 C -0.074 4.074 16 C -0.102 4.102 17 C -0.006 4.006 18 N -0.292 5.292 19 C -0.095 4.095 20 N -0.117 5.117 21 N -0.074 5.074 22 C 0.027 3.973 23 C -0.173 4.173 24 C -0.170 4.170 25 C 0.033 3.967 26 F -0.129 7.129 27 C -0.165 4.165 28 C -0.169 4.169 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.086 0.914 32 H 0.206 0.794 33 H 0.231 0.769 34 H 0.209 0.791 35 H 0.250 0.750 36 H 0.236 0.764 37 H 0.149 0.851 38 H 0.174 0.826 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.068 -10.913 5.883 13.048 hybrid contribution -0.160 1.575 -0.618 1.700 sum 3.908 -9.338 5.265 11.410 Atomic orbital electron populations 1.68967 1.07213 1.28351 1.48435 1.25634 0.95197 1.02459 0.93958 0.85775 0.79964 0.79342 0.77997 1.21336 1.20603 1.18140 1.21237 1.01079 0.92413 1.37445 0.91850 1.20575 0.97108 0.85234 0.88225 1.46984 1.35270 1.18597 1.22766 1.18244 0.80203 0.81729 0.86581 1.90499 1.65544 1.46338 1.40016 1.20389 1.00267 0.88009 0.96291 1.21869 0.99000 0.92682 0.96148 1.21738 0.91800 1.01505 0.92360 1.21044 1.01215 0.85867 1.02093 1.22702 0.93237 0.97270 0.87424 1.70748 1.30004 0.98353 1.30108 1.26652 0.92120 1.01746 0.88964 1.80220 1.22502 0.84408 1.24617 1.48644 1.32271 1.08151 1.18346 1.18327 0.93716 0.95260 0.89964 1.23810 0.93362 1.01016 0.99131 1.21091 1.01697 0.98429 0.95798 1.17934 0.95177 0.96474 0.87145 1.91410 1.70300 1.96813 1.54353 1.21127 0.98550 0.97087 0.99756 1.22253 0.99869 1.00340 0.94435 0.91170 0.95362 0.91414 0.79393 0.76896 0.79055 0.75030 0.76354 0.85060 0.82628 0.80941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -44.52 9.97 21.45 0.21 -44.31 16 2 C 0.03 1.34 4.97 84.65 0.42 1.76 16 3 Si 0.94 39.43 29.62 68.60 2.03 41.46 16 4 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 7 C -0.48 -23.94 6.06 25.60 0.16 -23.79 16 8 H 0.06 3.33 6.82 -2.91 -0.02 3.31 16 9 C 0.21 9.80 4.73 85.63 0.41 10.20 16 10 N -0.52 -23.51 2.79 -639.19 -1.78 -25.29 16 11 C 0.54 22.05 7.21 86.59 0.62 22.67 16 12 O -0.54 -22.36 13.52 -4.17 -0.06 -22.42 16 13 C 0.06 2.03 5.98 40.56 0.24 2.27 16 14 C -0.07 -1.54 9.63 22.55 0.22 -1.32 16 15 C -0.05 -0.63 10.04 22.21 0.22 -0.41 16 16 C -0.08 -1.47 10.09 22.44 0.23 -1.24 16 17 C 0.25 7.50 7.88 134.16 1.06 8.55 16 18 N -0.56 -18.92 11.24 -198.16 -2.23 -21.15 16 19 C 0.20 7.36 12.98 180.83 2.35 9.71 16 20 N -0.29 -11.89 5.92 -61.38 -0.36 -12.25 16 21 N -0.30 -10.66 2.77 -181.81 -0.50 -11.17 16 22 C 0.12 5.66 6.37 38.16 0.24 5.91 16 23 C -0.15 -7.38 8.80 22.39 0.20 -7.18 16 24 C -0.15 -6.48 10.02 22.30 0.22 -6.25 16 25 C 0.05 2.07 7.30 22.38 0.16 2.24 16 26 F -0.15 -5.53 17.27 44.97 0.78 -4.75 16 27 C -0.15 -5.43 10.02 22.30 0.22 -5.20 16 28 C -0.15 -6.17 8.95 22.39 0.20 -5.97 16 29 H 0.28 13.18 8.31 -92.71 -0.77 12.40 16 30 H 0.03 1.47 7.00 -2.39 -0.02 1.45 16 31 H 0.07 3.11 3.55 -13.46 -0.05 3.07 16 32 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.21 0.31 8.06 -2.91 -0.02 0.29 16 34 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.23 7.06 8.06 -2.91 -0.02 7.04 16 36 H 0.22 11.27 1.83 -31.95 -0.06 11.21 16 37 H 0.13 5.28 8.06 -2.91 -0.02 5.26 16 38 H 0.16 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.17 6.95 4.80 -37.67 -0.18 6.77 16 Total: -1.00 -65.62 326.09 6.15 -59.47 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.89 Total: 28.46 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 7.17 Total: 11.95 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -4.66 Total: -114.16 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.06 Total: -22.42 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.78 Total: -4.75 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -65.62 6.15 -59.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565591809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.751 kcal (2) G-P(sol) polarization free energy of solvation -65.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds