Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00004 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.47445 * 110.99993 * 69.87046 * 13 12 10 15 15 C 1.54316 * 107.22955 * 123.25758 * 14 13 12 16 16 C 1.55136 * 103.02142 * 22.28484 * 15 14 13 17 17 H 1.08994 * 110.99138 * 82.47321 * 16 15 14 18 18 N 1.46498 * 110.99021 * 206.25421 * 16 15 14 19 19 C 1.34779 * 120.00374 * 273.53909 * 18 16 15 20 20 O 1.21714 * 119.99451 * 0.02562 * 19 18 16 21 21 C 1.46549 * 120.00309 * 180.02562 * 19 18 16 22 22 C 1.37936 * 126.23027 * 179.69450 * 21 19 18 23 23 C 1.39748 * 107.12083 * 179.88053 * 22 21 19 24 24 C 1.35668 * 107.88669 * 0.38402 * 23 22 21 25 25 Cl 1.73601 * 125.57648 * 179.75696 * 24 23 22 26 26 N 1.35579 * 108.84404 * 359.75940 * 24 23 22 27 27 H 0.96999 * 125.69073 * 179.97438 * 26 24 23 28 28 C 1.47847 * 110.99838 * 190.71563 * 13 12 10 29 29 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 31 31 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 32 32 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 33 33 H 1.08996 * 109.88647 * 242.66232 * 14 13 12 34 34 H 1.08994 * 109.88900 * 3.85380 * 14 13 12 35 35 H 1.09003 * 110.70586 * 140.66565 * 15 14 13 36 36 H 1.08996 * 110.70638 * 263.72470 * 15 14 13 37 37 H 0.97008 * 120.00448 * 93.55093 * 18 16 15 38 38 H 1.07993 * 126.43893 * 0.02562 * 22 21 19 39 39 H 1.07997 * 126.05791 * 180.14334 * 23 22 21 40 40 H 1.09002 * 110.37141 * 332.46656 * 28 13 12 41 41 H 1.09002 * 110.37215 * 94.80650 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 2.9010 -6.0801 1.2668 15 6 2.6538 -7.5024 1.8120 16 6 2.3010 -8.3097 0.5351 17 1 3.2030 -8.6226 0.0093 18 7 1.4591 -9.4638 0.8598 19 6 2.0265 -10.6295 1.2285 20 8 3.2384 -10.7231 1.2920 21 6 1.1843 -11.7842 1.5528 22 6 1.6261 -13.0332 1.9367 23 6 0.4929 -13.8233 2.1479 24 6 -0.5998 -13.0630 1.8866 25 17 -2.2492 -13.5930 1.9983 26 7 -0.1930 -11.8216 1.5239 27 1 -0.7744 -11.0832 1.2838 28 6 1.5122 -7.2621 -0.2895 29 1 -0.4849 0.8400 0.0004 30 1 0.3535 -2.3907 -0.0068 31 1 0.6169 -4.9255 0.8690 32 1 0.6176 -4.9158 -0.9109 33 1 3.9692 -5.9190 1.1217 34 1 2.5037 -5.3418 1.9633 35 1 3.5550 -7.8974 2.2810 36 1 1.8215 -7.5061 2.5157 37 1 0.4932 -9.3892 0.8094 38 1 2.6543 -13.3417 2.0545 39 1 0.4881 -14.8573 2.4597 40 1 0.4768 -7.2149 0.0478 41 1 1.5556 -7.5042 -1.3515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566672910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = -19.374442 kcal Electronic energy + Delta-G solvation = -25917.691425 eV Core-core repulsion = 21859.391659 eV Total energy + Delta-G solvation = -4058.299765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.86423 -39.98535 -38.80801 -37.52345 -37.24202 -34.75217 -33.85256 -31.91163 -31.39254 -30.97499 -29.65541 -28.46997 -26.53286 -24.30319 -23.38194 -21.55548 -21.25537 -20.90322 -20.65783 -19.46942 -19.11151 -17.87963 -16.87883 -16.52205 -16.05421 -15.80818 -15.58042 -14.94221 -14.62112 -14.52423 -14.50068 -14.13287 -13.95439 -13.52250 -13.50737 -13.45237 -13.14069 -13.09397 -12.39671 -12.25665 -11.95509 -11.82774 -11.74372 -11.54339 -11.49310 -11.29093 -11.04613 -10.67484 -10.49867 -10.40372 -10.22977 -9.69070 -9.52153 -9.46117 -8.70029 -8.50016 -8.00148 -7.95955 -6.43084 -3.83700 0.82415 1.05808 2.03585 2.59039 2.67160 2.94334 3.17013 3.25681 3.31559 3.88480 3.99415 4.19549 4.33266 4.43121 4.61320 4.65807 4.74239 4.95144 5.10151 5.20231 5.22632 5.31478 5.33578 5.50889 5.56997 5.66086 5.72494 5.82907 5.88937 5.92612 6.01194 6.12070 6.20692 6.26014 6.42268 6.52099 7.02658 7.13592 7.15982 7.54139 7.75605 8.04866 8.60536 9.17184 9.52963 10.04975 10.74763 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023750 B = 0.001779 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.642216 B =15735.592200 C =16663.329747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.443 3.557 11 O -0.575 6.575 12 C 0.041 3.959 13 N -0.501 5.501 14 C 0.058 3.942 15 C -0.154 4.154 16 C 0.138 3.862 17 H 0.109 0.891 18 N -0.721 5.721 19 C 0.592 3.408 20 O -0.517 6.517 21 C -0.034 4.034 22 C -0.097 4.097 23 C -0.177 4.177 24 C 0.087 3.913 25 Cl -0.013 7.013 26 N -0.533 5.533 27 H 0.420 0.580 28 C 0.038 3.962 29 H 0.271 0.729 30 H 0.391 0.609 31 H 0.049 0.951 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.393 0.607 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.048 0.952 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.839 -26.843 3.968 27.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.228 3.772 11 O -0.458 6.458 12 C -0.091 4.091 13 N -0.225 5.225 14 C -0.070 4.070 15 C -0.194 4.194 16 C 0.033 3.967 17 H 0.127 0.873 18 N -0.372 5.372 19 C 0.378 3.622 20 O -0.392 6.392 21 C -0.147 4.147 22 C -0.123 4.123 23 C -0.202 4.202 24 C -0.056 4.056 25 Cl 0.015 6.985 26 N -0.133 5.133 27 H 0.258 0.742 28 C -0.091 4.091 29 H 0.081 0.919 30 H 0.224 0.776 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.227 0.773 38 H 0.177 0.823 39 H 0.174 0.826 40 H 0.066 0.934 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.098 -26.502 3.575 27.223 hybrid contribution -2.083 1.152 0.500 2.432 sum -7.182 -25.349 4.075 26.660 Atomic orbital electron populations 1.69608 1.05930 1.28122 1.50811 1.25260 0.95643 0.99716 0.97396 0.85857 0.79225 0.80799 0.78410 1.20395 1.20970 1.19419 1.19698 0.93366 0.82186 1.47454 0.87905 1.41857 1.09125 1.04581 1.64750 1.19703 0.88450 0.84462 0.84553 1.90532 1.13586 1.86942 1.54721 1.22098 0.93907 0.91584 1.01464 1.63243 1.26060 1.00877 1.32315 1.22716 1.01337 0.94044 0.88895 1.23251 1.02566 0.96288 0.97277 1.22184 0.94549 0.84029 0.95930 0.87265 1.45841 1.09879 1.11505 1.69926 1.16900 0.87182 0.81030 0.77076 1.90897 1.12848 1.83133 1.52300 1.20527 0.80783 0.97829 1.15544 1.21348 0.99638 0.90504 1.00796 1.20726 0.89348 1.00889 1.09273 1.21068 0.87532 0.87047 1.09922 1.98421 1.15046 1.88131 1.96903 1.42012 1.06824 1.11092 1.53378 0.74159 1.23263 0.95915 0.89162 1.00728 0.91912 0.77574 0.93291 0.89349 0.89411 0.92270 0.90037 0.91503 0.77325 0.82274 0.82646 0.93399 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 2 C 0.02 0.56 5.50 -17.46 -0.10 0.47 16 3 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.57 -14.14 5.29 -10.96 -0.06 -14.20 16 10 C 0.44 10.29 7.43 -10.98 -0.08 10.20 16 11 O -0.57 -15.40 15.12 5.55 0.08 -15.32 16 12 C 0.04 0.70 5.03 -4.97 -0.03 0.67 16 13 N -0.50 -7.91 4.85 -232.69 -1.13 -9.04 16 14 C 0.06 0.90 5.65 -2.84 -0.02 0.88 16 15 C -0.15 -1.86 6.64 -24.91 -0.17 -2.02 16 16 C 0.14 1.51 3.31 -65.80 -0.22 1.29 16 17 H 0.11 1.38 7.73 -51.93 -0.40 0.98 16 18 N -0.72 -6.16 5.23 -53.08 -0.28 -6.44 16 19 C 0.59 6.21 7.78 -12.91 -0.10 6.11 16 20 O -0.52 -7.37 16.63 5.18 0.09 -7.28 16 21 C -0.03 -0.29 7.06 -81.93 -0.58 -0.87 16 22 C -0.10 -0.80 10.65 -39.13 -0.42 -1.22 16 23 C -0.18 -1.23 10.78 -39.94 -0.43 -1.66 16 24 C 0.09 0.58 7.74 -16.82 -0.13 0.45 16 25 Cl -0.01 -0.08 29.30 -51.86 -1.52 -1.60 16 26 N -0.53 -3.30 6.00 -6.54 -0.04 -3.34 16 27 H 0.42 1.52 8.19 -40.82 -0.33 1.19 16 28 C 0.04 0.43 6.31 -2.30 -0.01 0.41 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 31 H 0.05 0.75 7.96 -51.93 -0.41 0.33 16 32 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 33 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.06 0.99 7.31 -51.93 -0.38 0.61 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.39 2.19 7.64 -40.82 -0.31 1.88 16 38 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.05 0.44 7.67 -51.93 -0.40 0.05 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -33.50 366.51 -9.07 -42.58 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.03 Total: 10.44 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -2.42 Total: 6.35 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.78 Total: -56.65 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.17 Total: -22.60 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.52 Total: -1.60 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.50 -9.07 -42.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566672910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.202 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds