Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00254 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00205 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00004 * 3 2 1 7 7 C 1.38956 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99770 * 179.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 0.27554 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.47445 * 110.99993 * 69.87046 * 13 12 10 15 15 C 1.54316 * 107.22955 * 123.25758 * 14 13 12 16 16 C 1.55136 * 103.02142 * 22.28484 * 15 14 13 17 17 H 1.08994 * 110.99138 * 82.47321 * 16 15 14 18 18 N 1.46498 * 110.99021 * 206.25421 * 16 15 14 19 19 C 1.34779 * 120.00374 * 273.53909 * 18 16 15 20 20 O 1.21714 * 119.99451 * 0.02562 * 19 18 16 21 21 C 1.46549 * 120.00309 * 180.02562 * 19 18 16 22 22 C 1.37936 * 126.23027 * 179.69450 * 21 19 18 23 23 C 1.39748 * 107.12083 * 179.88053 * 22 21 19 24 24 C 1.35668 * 107.88669 * 0.38402 * 23 22 21 25 25 Cl 1.73601 * 125.57648 * 179.75696 * 24 23 22 26 26 N 1.35579 * 108.84404 * 359.75940 * 24 23 22 27 27 H 0.96999 * 125.69073 * 179.97438 * 26 24 23 28 28 C 1.47847 * 110.99838 * 190.71563 * 13 12 10 29 29 H 0.96991 * 119.99827 * 359.97438 * 1 2 3 30 30 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 31 31 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 32 32 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 33 33 H 1.08996 * 109.88647 * 242.66232 * 14 13 12 34 34 H 1.08994 * 109.88900 * 3.85380 * 14 13 12 35 35 H 1.09003 * 110.70586 * 140.66565 * 15 14 13 36 36 H 1.08996 * 110.70638 * 263.72470 * 15 14 13 37 37 H 0.97008 * 120.00448 * 93.55093 * 18 16 15 38 38 H 1.07993 * 126.43893 * 0.02562 * 22 21 19 39 39 H 1.07997 * 126.05791 * 180.14334 * 23 22 21 40 40 H 1.09002 * 110.37141 * 332.46656 * 28 13 12 41 41 H 1.09002 * 110.37215 * 94.80650 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2034 -0.0005 8 1 3.0890 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0068 10 6 1.9974 -3.5578 -0.0130 11 8 3.2103 -3.5578 -0.0135 12 6 1.2439 -4.8629 -0.0204 13 7 2.1986 -5.9795 -0.0256 14 6 2.9010 -6.0801 1.2668 15 6 2.6538 -7.5024 1.8120 16 6 2.3010 -8.3097 0.5351 17 1 3.2030 -8.6226 0.0093 18 7 1.4591 -9.4638 0.8598 19 6 2.0265 -10.6295 1.2285 20 8 3.2384 -10.7231 1.2920 21 6 1.1843 -11.7842 1.5528 22 6 1.6261 -13.0332 1.9367 23 6 0.4929 -13.8233 2.1479 24 6 -0.5998 -13.0630 1.8866 25 17 -2.2492 -13.5930 1.9983 26 7 -0.1930 -11.8216 1.5239 27 1 -0.7744 -11.0832 1.2838 28 6 1.5122 -7.2621 -0.2895 29 1 -0.4849 0.8400 0.0004 30 1 0.3535 -2.3907 -0.0068 31 1 0.6169 -4.9255 0.8690 32 1 0.6176 -4.9158 -0.9109 33 1 3.9692 -5.9190 1.1217 34 1 2.5037 -5.3418 1.9633 35 1 3.5550 -7.8974 2.2810 36 1 1.8215 -7.5061 2.5157 37 1 0.4932 -9.3892 0.8094 38 1 2.6543 -13.3417 2.0545 39 1 0.4881 -14.8573 2.4597 40 1 0.4768 -7.2149 0.0478 41 1 1.5556 -7.5042 -1.3515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566672910.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = -45.706150 kcal Electronic energy + Delta-G solvation = -25918.833253 eV Core-core repulsion = 21859.391659 eV Total energy + Delta-G solvation = -4059.441594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.46006 -40.99848 -40.13889 -38.96443 -37.74479 -36.04623 -35.53579 -33.30897 -32.59959 -32.07192 -30.44464 -29.45689 -28.00903 -26.02835 -24.17598 -22.43626 -22.29535 -21.66456 -21.35588 -20.82750 -20.17984 -19.84823 -17.77531 -17.69278 -17.36148 -16.86031 -16.52173 -16.39888 -16.05447 -15.64399 -15.45536 -15.27121 -15.04183 -14.75056 -14.63163 -14.44890 -14.05928 -13.86501 -13.69406 -13.56175 -13.30363 -12.99521 -12.83176 -12.72075 -12.53572 -12.42947 -12.37111 -12.30364 -12.12527 -11.81275 -11.49272 -11.38871 -10.36383 -10.30397 -10.21780 -9.99773 -9.28612 -9.25167 -8.46398 -5.94432 0.17787 0.53417 1.37635 1.41433 1.45997 1.53694 1.80812 2.07196 2.16641 2.20623 2.29418 2.85238 3.20609 3.29543 3.48345 3.69731 3.74283 3.99432 4.10268 4.18308 4.23567 4.26528 4.30647 4.42829 4.51943 4.62102 4.76041 4.81878 4.89166 4.95182 5.05127 5.13414 5.26621 5.38687 5.41542 5.63533 5.83610 5.98002 6.06232 6.09463 6.37659 6.61970 7.00019 7.14287 7.57928 8.14501 8.70959 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023750 B = 0.001779 C = 0.001680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.642216 B =15735.592200 C =16663.329747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.991 3.009 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.331 4.331 8 H 0.077 0.923 9 N -0.575 5.575 10 C 0.439 3.561 11 O -0.617 6.617 12 C 0.055 3.945 13 N -0.526 5.526 14 C 0.061 3.939 15 C -0.141 4.141 16 C 0.147 3.853 17 H 0.090 0.910 18 N -0.704 5.704 19 C 0.594 3.406 20 O -0.562 6.562 21 C -0.047 4.047 22 C -0.107 4.107 23 C -0.181 4.181 24 C 0.091 3.909 25 Cl -0.001 7.001 26 N -0.520 5.520 27 H 0.432 0.568 28 C 0.044 3.956 29 H 0.277 0.723 30 H 0.396 0.604 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.412 0.588 38 H 0.158 0.842 39 H 0.173 0.827 40 H 0.081 0.919 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.243 -27.923 3.974 29.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.200 1.200 7 C -0.461 4.461 8 H 0.095 0.905 9 N -0.213 5.213 10 C 0.226 3.774 11 O -0.503 6.503 12 C -0.076 4.076 13 N -0.251 5.251 14 C -0.067 4.067 15 C -0.181 4.181 16 C 0.042 3.958 17 H 0.108 0.892 18 N -0.355 5.355 19 C 0.382 3.618 20 O -0.440 6.440 21 C -0.161 4.161 22 C -0.133 4.133 23 C -0.207 4.207 24 C -0.053 4.053 25 Cl 0.027 6.973 26 N -0.122 5.122 27 H 0.273 0.727 28 C -0.083 4.083 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.093 0.907 32 H 0.133 0.867 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.249 0.751 38 H 0.175 0.825 39 H 0.191 0.809 40 H 0.099 0.901 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.584 -27.584 3.569 28.830 hybrid contribution -1.359 1.399 0.501 2.014 sum -8.943 -26.185 4.071 27.968 Atomic orbital electron populations 1.69660 1.06699 1.29209 1.50537 1.25998 0.96561 1.02278 0.96445 0.84959 0.77874 0.77086 0.78614 1.19707 1.19512 1.19952 1.19627 0.92618 0.84081 1.49752 0.90530 1.41917 1.09286 1.04636 1.65474 1.20863 0.88343 0.86048 0.82128 1.90506 1.15874 1.87902 1.56002 1.21950 0.93427 0.88363 1.03848 1.63113 1.27013 1.02568 1.32444 1.22536 0.99532 0.95716 0.88895 1.23115 1.02928 0.94127 0.97933 1.21882 0.94398 0.84536 0.95008 0.89200 1.45583 1.10613 1.10251 1.69071 1.17108 0.86771 0.81647 0.76290 1.90879 1.14832 1.83901 1.54368 1.20187 0.81611 0.97225 1.17049 1.21526 1.00203 0.90852 1.00747 1.20966 0.88855 1.01741 1.09108 1.21197 0.88084 0.87047 1.08981 1.98433 1.14054 1.88001 1.96800 1.41909 1.06061 1.11473 1.52713 0.72658 1.23297 0.97076 0.86501 1.01457 0.91346 0.76966 0.90749 0.86686 0.92521 0.93902 0.90840 0.89750 0.75141 0.82457 0.80916 0.90114 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.10 13.05 21.67 0.28 -48.81 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 0.99 42.94 29.55 68.60 2.03 44.97 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.33 -18.75 9.68 84.04 0.81 -17.93 16 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 9 N -0.58 -29.09 5.29 -306.97 -1.62 -30.71 16 10 C 0.44 20.57 7.43 87.66 0.65 21.22 16 11 O -0.62 -34.25 15.12 -3.07 -0.05 -34.29 16 12 C 0.06 1.79 5.03 85.56 0.43 2.22 16 13 N -0.53 -16.07 4.85 -890.10 -4.32 -20.38 16 14 C 0.06 1.92 5.65 86.65 0.49 2.41 16 15 C -0.14 -3.30 6.64 31.77 0.21 -3.09 16 16 C 0.15 3.01 3.31 46.38 0.15 3.16 16 17 H 0.09 2.25 7.73 -2.39 -0.02 2.23 16 18 N -0.70 -10.49 5.23 -440.07 -2.30 -12.79 16 19 C 0.59 11.84 7.78 86.41 0.67 12.51 16 20 O -0.56 -16.12 16.63 -4.39 -0.07 -16.19 16 21 C -0.05 -0.74 7.06 40.30 0.28 -0.45 16 22 C -0.11 -1.66 10.65 22.56 0.24 -1.42 16 23 C -0.18 -2.18 10.78 22.04 0.24 -1.94 16 24 C 0.09 1.00 7.74 83.52 0.65 1.65 16 25 Cl 0.00 -0.01 29.30 -2.72 -0.08 -0.09 16 26 N -0.52 -5.17 6.00 -174.61 -1.05 -6.22 16 27 H 0.43 1.79 8.19 -92.71 -0.76 1.03 16 28 C 0.04 0.87 6.31 86.77 0.55 1.42 16 29 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 30 H 0.40 18.82 7.90 -92.71 -0.73 18.09 16 31 H 0.07 2.06 7.96 -2.38 -0.02 2.04 16 32 H 0.12 3.13 8.07 -2.39 -0.02 3.12 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.04 1.45 7.31 -2.39 -0.02 1.44 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.41 3.15 7.64 -92.70 -0.71 2.44 16 38 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.08 1.11 7.67 -2.39 -0.02 1.09 16 41 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -74.76 366.51 -2.42 -77.18 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: -1.09 Total: 27.81 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: 5.84 Total: 19.53 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -9.01 Total: -118.92 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -0.12 Total: -50.48 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -0.08 Total: -0.09 kcal Total: -74.76 -2.42 -77.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566672910.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.476 kcal (2) G-P(sol) polarization free energy of solvation -74.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds