Wall clock time and date at job start Sat Apr 11 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00354 * 2 1 4 4 H 1.48500 * 109.46978 * 269.99933 * 3 2 1 5 5 H 1.48497 * 109.46918 * 29.99615 * 3 2 1 6 6 H 1.48495 * 109.47397 * 150.00103 * 3 2 1 7 7 C 1.38816 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00519 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47424 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.49967 * 55.06748 * 11 10 9 13 13 C 1.53045 * 109.52419 * 175.14884 * 11 10 9 14 14 C 1.53035 * 109.53905 * 181.33120 * 13 11 10 15 15 C 1.53620 * 109.24315 * 298.50990 * 14 13 11 16 16 N 1.46928 * 108.54451 * 54.85603 * 15 14 13 17 17 C 1.34773 * 120.63361 * 126.36528 * 16 15 14 18 18 O 1.21563 * 120.00023 * 185.45329 * 17 16 15 19 19 C 1.47776 * 119.99828 * 5.45306 * 17 16 15 20 20 C 1.39611 * 120.14177 * 54.06468 * 19 17 16 21 21 C 1.38122 * 119.83881 * 180.23190 * 20 19 17 22 22 F 1.35102 * 119.93625 * 179.72173 * 21 20 19 23 23 C 1.38628 * 120.12855 * 359.51387 * 21 20 19 24 24 C 1.38245 * 120.28959 * 0.46373 * 23 21 20 25 25 C 1.38151 * 120.16174 * 359.79505 * 24 23 21 26 26 Cl 1.73600 * 120.06884 * 180.02562 * 25 24 23 27 27 C 1.46929 * 118.73575 * 306.09602 * 16 15 14 28 28 H 0.97008 * 119.99753 * 359.97438 * 1 2 3 29 29 H 0.97007 * 120.00066 * 359.97438 * 9 7 2 30 30 H 1.09010 * 109.46524 * 59.99749 * 10 9 7 31 31 H 1.08997 * 109.46992 * 300.00697 * 10 9 7 32 32 H 1.09001 * 109.45967 * 301.35667 * 13 11 10 33 33 H 1.09009 * 109.45678 * 61.32150 * 13 11 10 34 34 H 1.08999 * 109.49753 * 58.59033 * 14 13 11 35 35 H 1.09001 * 109.49799 * 178.65019 * 14 13 11 36 36 H 1.08994 * 109.74380 * 295.11830 * 15 14 13 37 37 H 1.09005 * 109.66646 * 174.54799 * 15 14 13 38 38 H 1.07997 * 120.08251 * 359.95370 * 20 19 17 39 39 H 1.08002 * 119.85671 * 180.21430 * 23 21 20 40 40 H 1.07997 * 119.91824 * 179.77138 * 24 23 21 41 41 H 1.09000 * 109.58368 * 173.64541 * 27 16 15 42 42 H 1.08999 * 109.58804 * 293.92487 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0005 11 6 1.0636 -4.8197 -0.0001 12 1 0.3803 -4.7137 -0.8426 13 6 1.8236 -6.1425 -0.1221 14 6 0.8276 -7.3038 -0.1562 15 6 0.0291 -7.3247 1.1561 16 7 -0.5889 -6.0056 1.3480 17 6 -1.9148 -5.8930 1.5619 18 8 -2.4298 -4.7934 1.6204 19 6 -2.7425 -7.1063 1.7253 20 6 -2.4019 -8.0636 2.6827 21 6 -3.1772 -9.1976 2.8268 22 9 -2.8461 -10.1279 3.7488 23 6 -4.2967 -9.3809 2.0301 24 6 -4.6392 -8.4362 1.0807 25 6 -3.8693 -7.3001 0.9228 26 17 -4.3020 -6.1150 -0.2697 27 6 0.2670 -4.8120 1.3084 28 1 -0.4850 0.8401 0.0004 29 1 0.3554 -2.3881 0.0005 30 1 2.6845 -3.7145 0.8906 31 1 2.6846 -3.7146 -0.8894 32 1 2.4108 -6.1405 -1.0404 33 1 2.4885 -6.2595 0.7338 34 1 0.1466 -7.1744 -0.9973 35 1 1.3683 -8.2437 -0.2672 36 1 0.6970 -7.5401 1.9900 37 1 -0.7476 -8.0875 1.1008 38 1 -1.5317 -7.9200 3.3061 39 1 -4.9018 -10.2676 2.1489 40 1 -5.5106 -8.5869 0.4608 41 1 -0.3527 -3.9164 1.3536 42 1 0.9522 -4.8253 2.1559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566906532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:24 Heat of formation + Delta-G solvation = -48.787376 kcal Electronic energy + Delta-G solvation = -27256.055909 eV Core-core repulsion = 23176.560742 eV Total energy + Delta-G solvation = -4079.495167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.37328 -40.69275 -38.94329 -37.44890 -36.63964 -34.94048 -33.08620 -31.84949 -31.63818 -30.68493 -29.66913 -26.06599 -25.53276 -23.89459 -23.26347 -22.97487 -21.42841 -20.45230 -19.48167 -17.94641 -17.33140 -17.05704 -16.97205 -16.50115 -16.07397 -15.86575 -15.04245 -14.75627 -14.61891 -14.55438 -14.13380 -13.84234 -13.64286 -13.50665 -13.46032 -13.07992 -12.90657 -12.75817 -12.53357 -12.38025 -12.02887 -11.66468 -11.42403 -11.17056 -11.09577 -11.00936 -10.82150 -10.64510 -10.39638 -10.29956 -10.00626 -9.88849 -9.61645 -9.52421 -9.00535 -8.83134 -8.55346 -6.86276 -5.68696 -2.98619 0.30416 0.50867 1.81514 2.48827 2.81378 3.05828 3.47835 3.52362 3.54799 3.69474 4.05467 4.22088 4.42931 4.61127 4.63548 4.71897 4.85164 4.91412 5.01474 5.17092 5.20586 5.29816 5.39114 5.41316 5.48644 5.54808 5.63975 5.64317 5.79074 5.83657 5.94487 6.09133 6.12841 6.13503 6.20831 6.39264 6.53381 6.59986 6.78102 6.89293 7.37312 7.75344 8.12217 8.48808 9.59857 10.17809 10.52026 11.53462 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002954 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.957998 B = 9476.534710 C =10350.584964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.075 0.925 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.102 3.898 16 N -0.602 5.602 17 C 0.553 3.447 18 O -0.499 6.499 19 C -0.081 4.081 20 C -0.115 4.115 21 C 0.100 3.900 22 F -0.132 7.132 23 C -0.127 4.127 24 C -0.085 4.085 25 C -0.011 4.011 26 Cl -0.031 7.031 27 C 0.121 3.879 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.020 0.980 31 H 0.022 0.978 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.106 0.894 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 -25.907 3.142 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.374 4.374 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.033 3.967 11 C -0.126 4.126 12 H 0.093 0.907 13 C -0.150 4.150 14 C -0.171 4.171 15 C -0.021 4.021 16 N -0.335 5.335 17 C 0.338 3.662 18 O -0.373 6.373 19 C -0.085 4.085 20 C -0.134 4.134 21 C 0.081 3.919 22 F -0.110 7.110 23 C -0.146 4.146 24 C -0.104 4.104 25 C -0.039 4.039 26 Cl -0.001 7.001 27 C 0.000 4.000 28 H 0.065 0.935 29 H 0.220 0.780 30 H 0.037 0.963 31 H 0.039 0.961 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.124 0.876 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.841 -25.081 3.114 26.183 hybrid contribution 0.215 0.765 0.068 0.797 sum -6.626 -24.316 3.182 25.402 Atomic orbital electron populations 1.69677 1.05040 1.25618 1.57339 1.24759 0.95490 0.97656 1.02998 0.86213 0.78625 0.84027 0.77445 1.21794 1.21790 1.20809 1.19193 0.90945 0.84177 1.43038 0.91256 1.42419 1.05968 0.99929 1.89481 1.20626 0.92932 0.85154 0.98003 1.21685 0.97980 0.95158 0.97826 0.90666 1.21528 0.97436 0.93682 1.02395 1.21977 0.98601 0.99223 0.97278 1.21962 0.97449 0.84403 0.98268 1.48089 1.06430 1.08434 1.70566 1.18001 0.82005 0.88140 0.78051 1.90925 1.71470 1.26356 1.48592 1.19744 0.95912 0.95776 0.97100 1.21230 1.00983 0.92059 0.99170 1.17516 0.95990 0.87975 0.90462 1.91547 1.92112 1.63719 1.63629 1.21249 0.96509 1.00967 0.95856 1.20915 0.99661 0.91574 0.98201 1.21033 0.95475 0.92913 0.94497 1.98454 1.92145 1.55690 1.53846 1.21799 0.93180 0.87637 0.97418 0.93488 0.78048 0.96254 0.96064 0.91420 0.91702 0.91399 0.90829 0.91058 0.90166 0.83214 0.83348 0.83195 0.87606 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.09 13.06 55.49 0.72 -28.37 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.73 -18.96 5.38 -59.91 -0.32 -19.28 16 10 C 0.16 3.21 5.66 -4.04 -0.02 3.19 16 11 C -0.11 -1.72 2.37 -90.50 -0.21 -1.94 16 12 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 13 C -0.11 -1.33 5.17 -26.69 -0.14 -1.47 16 14 C -0.13 -1.29 6.10 -26.39 -0.16 -1.46 16 15 C 0.10 1.01 5.60 -3.49 -0.02 0.99 16 16 N -0.60 -8.32 2.97 -173.64 -0.52 -8.83 16 17 C 0.55 8.53 6.59 -12.36 -0.08 8.45 16 18 O -0.50 -10.00 15.57 5.31 0.08 -9.91 16 19 C -0.08 -0.97 4.61 -104.94 -0.48 -1.45 16 20 C -0.11 -1.08 7.75 -39.11 -0.30 -1.38 16 21 C 0.10 0.83 7.29 -39.48 -0.29 0.54 16 22 F -0.13 -1.13 17.26 2.25 0.04 -1.09 16 23 C -0.13 -0.86 10.02 -39.43 -0.39 -1.26 16 24 C -0.08 -0.66 9.82 -39.61 -0.39 -1.05 16 25 C -0.01 -0.13 6.34 -39.07 -0.25 -0.37 16 26 Cl -0.03 -0.41 27.36 -51.86 -1.42 -1.83 16 27 C 0.12 1.99 5.52 -3.71 -0.02 1.97 16 28 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 29 H 0.39 10.69 6.89 -40.82 -0.28 10.41 16 30 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.69 5.37 -51.93 -0.28 0.41 16 38 H 0.15 1.23 7.75 -52.49 -0.41 0.82 16 39 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.11 2.20 6.19 -51.93 -0.32 1.88 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -33.94 362.53 -9.47 -43.41 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.49 Total: 5.33 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -3.01 Total: -2.78 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.11 Total: -56.48 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.42 Total: -1.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.94 -9.47 -43.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566906532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.378 kcal (2) G-P(sol) polarization free energy of solvation -33.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds