Wall clock time and date at job start Sat Apr 11 2020 05:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00354 * 2 1 4 4 H 1.48500 * 109.46978 * 269.99933 * 3 2 1 5 5 H 1.48497 * 109.46918 * 29.99615 * 3 2 1 6 6 H 1.48495 * 109.47397 * 150.00103 * 3 2 1 7 7 C 1.38816 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00519 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47424 * 180.02562 * 10 9 7 12 12 H 1.08990 * 109.49967 * 55.06748 * 11 10 9 13 13 C 1.53045 * 109.52419 * 175.14884 * 11 10 9 14 14 C 1.53035 * 109.53905 * 181.33120 * 13 11 10 15 15 C 1.53620 * 109.24315 * 298.50990 * 14 13 11 16 16 N 1.46928 * 108.54451 * 54.85603 * 15 14 13 17 17 C 1.34773 * 120.63361 * 126.36528 * 16 15 14 18 18 O 1.21563 * 120.00023 * 185.45329 * 17 16 15 19 19 C 1.47776 * 119.99828 * 5.45306 * 17 16 15 20 20 C 1.39611 * 120.14177 * 54.06468 * 19 17 16 21 21 C 1.38122 * 119.83881 * 180.23190 * 20 19 17 22 22 F 1.35102 * 119.93625 * 179.72173 * 21 20 19 23 23 C 1.38628 * 120.12855 * 359.51387 * 21 20 19 24 24 C 1.38245 * 120.28959 * 0.46373 * 23 21 20 25 25 C 1.38151 * 120.16174 * 359.79505 * 24 23 21 26 26 Cl 1.73600 * 120.06884 * 180.02562 * 25 24 23 27 27 C 1.46929 * 118.73575 * 306.09602 * 16 15 14 28 28 H 0.97008 * 119.99753 * 359.97438 * 1 2 3 29 29 H 0.97007 * 120.00066 * 359.97438 * 9 7 2 30 30 H 1.09010 * 109.46524 * 59.99749 * 10 9 7 31 31 H 1.08997 * 109.46992 * 300.00697 * 10 9 7 32 32 H 1.09001 * 109.45967 * 301.35667 * 13 11 10 33 33 H 1.09009 * 109.45678 * 61.32150 * 13 11 10 34 34 H 1.08999 * 109.49753 * 58.59033 * 14 13 11 35 35 H 1.09001 * 109.49799 * 178.65019 * 14 13 11 36 36 H 1.08994 * 109.74380 * 295.11830 * 15 14 13 37 37 H 1.09005 * 109.66646 * 174.54799 * 15 14 13 38 38 H 1.07997 * 120.08251 * 359.95370 * 20 19 17 39 39 H 1.08002 * 119.85671 * 180.21430 * 23 21 20 40 40 H 1.07997 * 119.91824 * 179.77138 * 24 23 21 41 41 H 1.09000 * 109.58368 * 173.64541 * 27 16 15 42 42 H 1.08999 * 109.58804 * 293.92487 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0005 11 6 1.0636 -4.8197 -0.0001 12 1 0.3803 -4.7137 -0.8426 13 6 1.8236 -6.1425 -0.1221 14 6 0.8276 -7.3038 -0.1562 15 6 0.0291 -7.3247 1.1561 16 7 -0.5889 -6.0056 1.3480 17 6 -1.9148 -5.8930 1.5619 18 8 -2.4298 -4.7934 1.6204 19 6 -2.7425 -7.1063 1.7253 20 6 -2.4019 -8.0636 2.6827 21 6 -3.1772 -9.1976 2.8268 22 9 -2.8461 -10.1279 3.7488 23 6 -4.2967 -9.3809 2.0301 24 6 -4.6392 -8.4362 1.0807 25 6 -3.8693 -7.3001 0.9228 26 17 -4.3020 -6.1150 -0.2697 27 6 0.2670 -4.8120 1.3084 28 1 -0.4850 0.8401 0.0004 29 1 0.3554 -2.3881 0.0005 30 1 2.6845 -3.7145 0.8906 31 1 2.6846 -3.7146 -0.8894 32 1 2.4108 -6.1405 -1.0404 33 1 2.4885 -6.2595 0.7338 34 1 0.1466 -7.1744 -0.9973 35 1 1.3683 -8.2437 -0.2672 36 1 0.6970 -7.5401 1.9900 37 1 -0.7476 -8.0875 1.1008 38 1 -1.5317 -7.9200 3.3061 39 1 -4.9018 -10.2676 2.1489 40 1 -5.5106 -8.5869 0.4608 41 1 -0.3527 -3.9164 1.3536 42 1 0.9522 -4.8253 2.1559 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566906532.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:24 Heat of formation + Delta-G solvation = -70.016538 kcal Electronic energy + Delta-G solvation = -27256.976475 eV Core-core repulsion = 23176.560742 eV Total energy + Delta-G solvation = -4080.415733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.02723 -41.72641 -39.84947 -38.67347 -37.54017 -36.62437 -34.58757 -33.13358 -32.68434 -31.44912 -31.28522 -27.42723 -26.89907 -24.91124 -24.73859 -23.82357 -22.70186 -21.68065 -20.54116 -19.21321 -18.76738 -18.11646 -17.78238 -17.44581 -16.97836 -16.72690 -16.67581 -16.15895 -15.75058 -15.42721 -15.32375 -15.27879 -14.90423 -14.58819 -14.41095 -14.23020 -14.11920 -13.96350 -13.74694 -13.62414 -13.03155 -12.91752 -12.75731 -12.70580 -12.37605 -12.20021 -12.13247 -12.04694 -11.93760 -11.83310 -11.57667 -11.33579 -11.05575 -10.95747 -10.31367 -9.78688 -9.69562 -9.01421 -7.94512 -5.25149 -0.45442 -0.17413 0.97176 1.43644 1.44652 1.47743 1.56258 1.80737 2.23505 2.55126 2.95625 3.26792 3.38301 3.51415 3.69552 3.80746 3.86592 3.88607 3.96529 4.06197 4.15017 4.24969 4.30432 4.42904 4.55296 4.57500 4.73219 4.76136 4.78204 4.84624 4.86777 4.89663 4.92120 5.03569 5.10686 5.21637 5.33552 5.44309 5.46638 5.50568 5.51342 6.25568 6.27106 6.98068 7.31220 8.08095 8.29981 9.28867 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.002954 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.957998 B = 9476.534710 C =10350.584964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.298 1.298 6 H -0.265 1.265 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.158 3.842 11 C -0.094 4.094 12 H 0.047 0.953 13 C -0.105 4.105 14 C -0.127 4.127 15 C 0.096 3.904 16 N -0.598 5.598 17 C 0.547 3.453 18 O -0.562 6.562 19 C -0.100 4.100 20 C -0.110 4.110 21 C 0.104 3.896 22 F -0.129 7.129 23 C -0.105 4.105 24 C -0.075 4.075 25 C -0.027 4.027 26 Cl -0.063 7.063 27 C 0.128 3.872 28 H 0.249 0.751 29 H 0.370 0.630 30 H 0.030 0.970 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.160 0.840 39 H 0.186 0.814 40 H 0.177 0.823 41 H 0.052 0.948 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.529 -29.650 3.781 30.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.392 5.392 10 C 0.032 3.968 11 C -0.114 4.114 12 H 0.066 0.934 13 C -0.143 4.143 14 C -0.165 4.165 15 C -0.025 4.025 16 N -0.330 5.330 17 C 0.335 3.665 18 O -0.441 6.441 19 C -0.104 4.104 20 C -0.130 4.130 21 C 0.084 3.916 22 F -0.108 7.108 23 C -0.123 4.123 24 C -0.093 4.093 25 C -0.054 4.054 26 Cl -0.034 7.034 27 C 0.006 3.994 28 H 0.058 0.942 29 H 0.202 0.798 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.178 0.822 39 H 0.204 0.796 40 H 0.195 0.805 41 H 0.071 0.929 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.626 -28.908 3.748 29.688 hybrid contribution -0.123 1.773 -0.087 1.779 sum -5.749 -27.136 3.661 27.978 Atomic orbital electron populations 1.69878 1.06903 1.25983 1.59504 1.25672 0.96340 1.01470 1.03767 0.85088 0.77718 0.79180 0.77464 1.21312 1.22437 1.18958 1.19676 0.91586 0.85290 1.41136 0.90193 1.42693 1.05547 1.01516 1.89411 1.20842 0.93558 0.84161 0.98254 1.21536 0.96992 0.96429 0.96452 0.93398 1.21511 0.97684 0.91478 1.03638 1.21976 0.98008 0.99891 0.96581 1.22332 0.98335 0.82381 0.99413 1.48165 1.06014 1.09183 1.69611 1.18622 0.82488 0.88612 0.76784 1.90886 1.72690 1.29014 1.51504 1.19435 0.96387 0.95277 0.99308 1.21241 1.01599 0.91799 0.98323 1.17546 0.96106 0.87431 0.90476 1.91564 1.92141 1.63472 1.63606 1.21637 0.95595 1.01307 0.93776 1.21205 0.99628 0.90088 0.98379 1.21264 0.96213 0.93531 0.94434 1.98442 1.92356 1.57374 1.55200 1.21460 0.92741 0.87195 0.98041 0.94179 0.79821 0.95235 0.95557 0.90596 0.89867 0.92759 0.86933 0.88402 0.88355 0.82213 0.79629 0.80547 0.92939 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.71 13.06 21.65 0.28 -63.43 16 2 C -0.08 -4.87 5.50 84.86 0.47 -4.41 16 3 Si 0.98 48.13 29.55 68.60 2.03 50.16 16 4 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 5 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 6 H -0.26 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.25 -14.29 9.99 84.04 0.84 -13.45 16 8 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.75 -40.38 5.38 -343.45 -1.85 -42.23 16 10 C 0.16 6.41 5.66 86.38 0.49 6.90 16 11 C -0.09 -3.11 2.37 -10.72 -0.03 -3.13 16 12 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 13 C -0.11 -2.27 5.17 30.62 0.16 -2.11 16 14 C -0.13 -2.11 6.10 30.81 0.19 -1.92 16 15 C 0.10 1.66 5.60 86.51 0.48 2.15 16 16 N -0.60 -16.79 2.97 -821.56 -2.44 -19.23 16 17 C 0.55 17.75 6.59 86.77 0.57 18.32 16 18 O -0.56 -24.63 15.57 -3.91 -0.06 -24.69 16 19 C -0.10 -2.35 4.61 -20.07 -0.09 -2.45 16 20 C -0.11 -1.84 7.75 22.57 0.18 -1.66 16 21 C 0.10 1.36 7.29 22.34 0.16 1.52 16 22 F -0.13 -1.74 17.26 44.97 0.78 -0.96 16 23 C -0.10 -0.98 10.02 22.36 0.22 -0.76 16 24 C -0.07 -0.95 9.82 22.25 0.22 -0.73 16 25 C -0.03 -0.58 6.34 22.60 0.14 -0.44 16 26 Cl -0.06 -1.75 27.36 -2.72 -0.07 -1.82 16 27 C 0.13 4.44 5.52 86.36 0.48 4.92 16 28 H 0.25 15.86 8.31 -92.70 -0.77 15.09 16 29 H 0.37 22.02 6.89 -92.70 -0.64 21.38 16 30 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.10 1.40 5.37 -2.38 -0.01 1.38 16 38 H 0.16 2.25 7.75 -2.91 -0.02 2.23 16 39 H 0.19 0.44 8.06 -2.91 -0.02 0.41 16 40 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.05 2.40 6.19 -2.39 -0.01 2.39 16 42 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -80.21 362.53 3.56 -76.65 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.42 Total: 22.81 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 4.48 Total: 2.75 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -4.00 Total: -124.89 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.06 Total: -24.69 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.78 Total: -0.96 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.07 Total: -1.82 kcal Total: -80.21 3.56 -76.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566906532.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.633 kcal (2) G-P(sol) polarization free energy of solvation -80.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds