Wall clock time and date at job start Sat Apr 11 2020 05:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 120.00030 * 2 1 4 4 H 1.48498 * 109.47115 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46766 * 119.99994 * 3 2 1 6 6 H 1.48491 * 109.47105 * 239.99688 * 3 2 1 7 7 C 1.38817 * 119.99877 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99893 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.46496 * 119.99978 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47324 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.49304 * 304.92948 * 11 10 9 13 13 C 1.53034 * 109.49966 * 184.83562 * 11 10 9 14 14 C 1.53040 * 109.53878 * 178.67997 * 13 11 10 15 15 C 1.53188 * 109.31484 * 61.36326 * 14 13 11 16 16 N 1.46929 * 108.77660 * 305.36887 * 15 14 13 17 17 C 1.34773 * 120.63076 * 233.58508 * 16 15 14 18 18 O 1.21562 * 120.00045 * 174.27703 * 17 16 15 19 19 C 1.47774 * 119.99820 * 354.27982 * 17 16 15 20 20 C 1.39613 * 120.14416 * 305.97546 * 19 17 16 21 21 C 1.38121 * 119.83491 * 179.74351 * 20 19 17 22 22 F 1.35101 * 119.93312 * 180.23003 * 21 20 19 23 23 C 1.38622 * 120.13194 * 0.51080 * 21 20 19 24 24 C 1.38233 * 120.29384 * 359.76356 * 23 21 20 25 25 C 1.38159 * 120.15711 * 359.97438 * 24 23 21 26 26 Cl 1.73604 * 120.06602 * 180.02562 * 25 24 23 27 27 C 1.46933 * 118.73748 * 53.60455 * 16 15 14 28 28 H 0.97008 * 119.99890 * 179.97438 * 1 2 3 29 29 H 0.97004 * 119.99755 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.46705 * 299.99470 * 10 9 7 31 31 H 1.08998 * 109.47514 * 59.99844 * 10 9 7 32 32 H 1.08997 * 109.46223 * 298.70047 * 13 11 10 33 33 H 1.09008 * 109.46420 * 58.65833 * 13 11 10 34 34 H 1.08999 * 109.49922 * 301.41040 * 14 13 11 35 35 H 1.09004 * 109.52672 * 181.33484 * 14 13 11 36 36 H 1.08993 * 109.59242 * 185.57608 * 15 14 13 37 37 H 1.09007 * 109.70128 * 65.22249 * 15 14 13 38 38 H 1.07997 * 120.07810 * 0.02562 * 20 19 17 39 39 H 1.08005 * 119.85370 * 179.73837 * 23 21 20 40 40 H 1.08001 * 119.92337 * 179.97438 * 24 23 21 41 41 H 1.09000 * 109.58101 * 186.60877 * 27 16 15 42 42 H 1.08990 * 109.58618 * 66.18258 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6963 1.2125 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8198 -0.0012 12 1 0.3799 -4.7141 0.8411 13 6 1.8245 -6.1421 0.1204 14 6 0.8290 -7.3041 0.1530 15 6 0.0306 -7.3240 -1.1542 16 7 -0.5871 -6.0055 -1.3513 17 6 -1.9129 -5.8935 -1.5660 18 8 -2.4285 -4.7942 -1.6239 19 6 -2.7398 -7.1071 -1.7311 20 6 -2.3975 -8.0638 -2.6885 21 6 -3.1718 -9.1983 -2.8338 22 9 -2.8397 -10.1275 -3.7565 23 6 -4.2923 -9.3825 -2.0387 24 6 -4.6394 -8.4360 -1.0929 25 6 -3.8704 -7.2993 -0.9337 26 17 -4.3082 -6.1125 0.2553 27 6 0.2681 -4.8114 -1.3102 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3555 -2.3880 0.0002 30 1 2.6847 -3.7145 -0.8906 31 1 2.6848 -3.7146 0.8894 32 1 2.4901 -6.2582 -0.7348 33 1 2.4110 -6.1406 1.0392 34 1 0.1473 -7.1757 0.9937 35 1 1.3697 -8.2441 0.2634 36 1 -0.7462 -8.0864 -1.0965 37 1 0.6969 -7.5437 -1.9885 38 1 -1.5268 -7.9192 -3.3109 39 1 -4.8970 -10.2693 -2.1589 40 1 -5.5139 -8.5854 -0.4769 41 1 -0.3520 -3.9162 -1.3552 42 1 0.9556 -4.8252 -2.1558 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566906533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:26 Heat of formation + Delta-G solvation = -70.936621 kcal Electronic energy + Delta-G solvation = -27309.709451 eV Core-core repulsion = 23229.253820 eV Total energy + Delta-G solvation = -4080.455631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.05435 -41.79498 -39.91523 -38.76587 -37.58067 -36.90873 -34.76495 -33.16738 -32.73082 -31.46570 -31.19270 -27.32930 -26.84507 -25.03590 -24.78963 -23.86861 -22.86747 -21.75469 -20.60518 -19.37114 -18.89867 -18.17296 -17.81578 -17.51484 -17.04289 -16.83642 -16.64199 -16.17180 -15.90253 -15.75093 -15.42369 -15.29718 -14.95370 -14.66352 -14.44680 -14.25811 -14.22138 -14.06930 -13.83177 -13.66511 -13.10961 -12.79797 -12.70835 -12.57439 -12.41746 -12.20223 -12.11879 -11.94053 -11.91302 -11.77110 -11.59120 -11.22752 -11.09414 -10.96058 -10.35165 -9.83400 -9.76005 -9.14692 -8.42703 -5.36866 -0.49251 -0.20630 0.93328 1.37364 1.55274 1.66816 1.73784 1.83066 2.19777 2.70288 2.91635 3.22256 3.37858 3.47253 3.58211 3.75034 3.77609 3.79734 3.91766 3.97966 4.02988 4.16965 4.22433 4.32817 4.49514 4.51788 4.63850 4.69064 4.71840 4.77627 4.80896 4.81931 4.88474 4.92562 5.03378 5.12338 5.24023 5.36865 5.40442 5.47548 5.55325 6.19752 6.43370 6.90772 7.05341 7.95414 8.08458 9.08234 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015934 B = 0.002961 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.880650 B = 9453.940749 C =10325.562356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.109 4.109 3 Si 1.132 2.868 4 H -0.294 1.294 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.336 4.336 8 H 0.071 0.929 9 N -0.760 5.760 10 C 0.164 3.836 11 C -0.095 4.095 12 H 0.048 0.952 13 C -0.105 4.105 14 C -0.126 4.126 15 C 0.096 3.904 16 N -0.598 5.598 17 C 0.548 3.452 18 O -0.563 6.563 19 C -0.101 4.101 20 C -0.110 4.110 21 C 0.104 3.896 22 F -0.129 7.129 23 C -0.104 4.104 24 C -0.074 4.074 25 C -0.026 4.026 26 Cl -0.063 7.063 27 C 0.129 3.871 28 H 0.239 0.761 29 H 0.357 0.643 30 H 0.028 0.972 31 H 0.025 0.975 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.054 0.946 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.160 0.840 39 H 0.187 0.813 40 H 0.178 0.822 41 H 0.050 0.950 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 -29.761 -3.778 30.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.300 4.300 3 Si 0.955 3.045 4 H -0.221 1.221 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.467 4.467 8 H 0.089 0.911 9 N -0.405 5.405 10 C 0.038 3.962 11 C -0.115 4.115 12 H 0.066 0.934 13 C -0.143 4.143 14 C -0.164 4.164 15 C -0.025 4.025 16 N -0.330 5.330 17 C 0.336 3.664 18 O -0.442 6.442 19 C -0.105 4.105 20 C -0.130 4.130 21 C 0.085 3.915 22 F -0.108 7.108 23 C -0.122 4.122 24 C -0.093 4.093 25 C -0.054 4.054 26 Cl -0.034 7.034 27 C 0.006 3.994 28 H 0.050 0.950 29 H 0.188 0.812 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.178 0.822 39 H 0.204 0.796 40 H 0.195 0.805 41 H 0.069 0.931 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.277 -27.494 -3.739 28.245 hybrid contribution -0.304 -0.920 0.072 0.971 sum -5.582 -28.414 -3.667 29.188 Atomic orbital electron populations 1.70993 1.07382 1.27643 1.56254 1.27381 0.97035 1.05083 1.00495 0.82604 0.73315 0.71200 0.77343 1.22062 1.20038 1.20032 1.20425 0.92474 0.87069 1.46757 0.91095 1.42705 1.04707 1.02347 1.90724 1.20772 0.93492 0.83823 0.98148 1.21557 0.96968 0.96486 0.96474 0.93387 1.21505 0.97719 0.91401 1.03668 1.21904 0.97981 0.99892 0.96660 1.22247 0.98417 0.82354 0.99440 1.48158 1.06055 1.09133 1.69617 1.18634 0.82418 0.88664 0.76689 1.90877 1.72652 1.29076 1.51587 1.19410 0.96366 0.95266 0.99446 1.21240 1.01623 0.91821 0.98274 1.17543 0.96093 0.87421 0.90454 1.91566 1.92117 1.63539 1.63530 1.21643 0.95526 1.01303 0.93756 1.21211 0.99656 0.90026 0.98375 1.21264 0.96120 0.93521 0.94509 1.98442 1.92227 1.57279 1.55453 1.21435 0.92701 0.87218 0.98014 0.95045 0.81156 0.95383 0.95714 0.89864 0.90599 0.92724 0.86746 0.88243 0.88398 0.82232 0.79572 0.80503 0.93150 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.64 13.70 21.65 0.30 -65.34 16 2 C -0.11 -6.72 5.50 84.86 0.47 -6.26 16 3 Si 1.13 54.33 29.92 68.60 2.05 56.38 16 4 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 5 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.34 -19.97 9.99 84.04 0.84 -19.13 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.76 -41.29 5.37 -343.45 -1.85 -43.13 16 10 C 0.16 6.78 5.65 86.38 0.49 7.26 16 11 C -0.10 -3.14 2.38 -10.72 -0.03 -3.17 16 12 H 0.05 1.82 8.14 -2.38 -0.02 1.81 16 13 C -0.10 -2.28 5.17 30.62 0.16 -2.12 16 14 C -0.13 -2.09 6.08 30.67 0.19 -1.91 16 15 C 0.10 1.65 5.58 86.36 0.48 2.13 16 16 N -0.60 -16.65 2.97 -822.40 -2.44 -19.09 16 17 C 0.55 17.59 6.59 86.77 0.57 18.16 16 18 O -0.56 -24.36 15.55 -3.91 -0.06 -24.42 16 19 C -0.10 -2.34 4.60 -20.07 -0.09 -2.44 16 20 C -0.11 -1.81 7.76 22.57 0.18 -1.64 16 21 C 0.10 1.34 7.29 22.33 0.16 1.50 16 22 F -0.13 -1.71 17.26 44.97 0.78 -0.93 16 23 C -0.10 -0.95 10.02 22.36 0.22 -0.72 16 24 C -0.07 -0.93 9.82 22.25 0.22 -0.71 16 25 C -0.03 -0.57 6.34 22.60 0.14 -0.42 16 26 Cl -0.06 -1.74 27.35 -2.72 -0.07 -1.81 16 27 C 0.13 4.45 5.53 86.36 0.48 4.93 16 28 H 0.24 16.47 6.78 -92.70 -0.63 15.84 16 29 H 0.36 20.85 5.73 -92.71 -0.53 20.32 16 30 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 1.39 5.39 -2.39 -0.01 1.38 16 37 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.16 2.23 7.76 -2.91 -0.02 2.20 16 39 H 0.19 0.39 8.06 -2.91 -0.02 0.37 16 40 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.05 2.28 6.20 -2.39 -0.01 2.26 16 42 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -82.84 360.81 3.84 -78.99 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.67 Total: 23.89 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 4.48 Total: -4.53 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -3.99 Total: -127.57 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.06 Total: -24.42 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.78 Total: -0.93 kcal Atomic # 14 Polarization: 54.33 SS G_CDS: 2.05 Total: 56.38 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.07 Total: -1.81 kcal Total: -82.84 3.84 -78.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566906533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.055 kcal (2) G-P(sol) polarization free energy of solvation -82.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds