Wall clock time and date at job start Sat Apr 11 2020 05:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86806 * 119.99829 * 2 1 4 4 H 1.48494 * 109.47125 * 269.99755 * 3 2 1 5 5 H 1.48500 * 109.47049 * 29.99961 * 3 2 1 6 6 H 1.48496 * 109.47098 * 149.99861 * 3 2 1 7 7 C 1.38941 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00613 * 180.02562 * 7 2 1 9 9 N 1.37098 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.34778 * 120.00541 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99916 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99851 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.46752 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99714 * 180.02562 * 13 12 10 15 15 H 1.09000 * 110.64269 * 31.85582 * 14 13 12 16 16 C 1.55163 * 110.71998 * 155.00061 * 14 13 12 17 17 C 1.54907 * 101.58134 * 154.04163 * 16 14 13 18 18 N 1.47429 * 104.83334 * 322.98813 * 17 16 14 19 19 C 1.34773 * 125.64669 * 204.09752 * 18 17 16 20 20 O 1.21711 * 120.00544 * 5.11446 * 19 18 17 21 21 C 1.46558 * 119.99495 * 185.11762 * 19 18 17 22 22 C 1.37935 * 126.22861 * 174.74409 * 21 19 18 23 23 C 1.39740 * 107.11911 * 180.14121 * 22 21 19 24 24 C 1.35662 * 107.88837 * 359.61382 * 23 22 21 25 25 Cl 1.73599 * 125.57636 * 180.26243 * 24 23 22 26 26 N 1.35573 * 108.84515 * 0.24238 * 24 23 22 27 27 H 0.96999 * 125.69348 * 179.97438 * 26 24 23 28 28 C 1.47027 * 108.70095 * 24.35629 * 18 17 16 29 29 H 0.96999 * 120.00235 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99378 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.47508 * 60.00555 * 12 10 9 32 32 H 1.08998 * 109.47247 * 300.00219 * 12 10 9 33 33 H 1.00898 * 110.99986 * 303.94717 * 13 12 10 34 34 H 1.08995 * 111.00394 * 35.96397 * 16 14 13 35 35 H 1.09002 * 111.00012 * 272.11666 * 16 14 13 36 36 H 1.09003 * 110.36615 * 204.15084 * 17 16 14 37 37 H 1.08998 * 110.36865 * 81.83036 * 17 16 14 38 38 H 1.08004 * 126.43806 * 0.02562 * 22 21 19 39 39 H 1.08005 * 126.05753 * 179.87611 * 23 22 21 40 40 H 1.09001 * 109.87413 * 118.12859 * 28 18 17 41 41 H 1.08998 * 109.88195 * 239.29495 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1986 -5.9794 0.0007 14 6 1.4983 -7.2707 -0.0005 15 1 0.5541 -7.1954 -0.5398 16 6 2.3935 -8.3802 -0.6131 17 6 1.8258 -9.6499 0.0690 18 7 1.4909 -9.2240 1.4401 19 6 1.4051 -10.0327 2.5149 20 8 1.7030 -11.2087 2.4170 21 6 0.9530 -9.4959 3.8015 22 6 0.7210 -10.2216 4.9513 23 6 0.3025 -9.3173 5.9310 24 6 0.2941 -8.0784 5.3783 25 17 -0.1475 -6.6113 6.1945 26 7 0.6875 -8.1735 4.0844 27 1 0.7682 -7.4342 3.4616 28 6 1.2600 -7.7720 1.4397 29 1 -0.4850 0.8400 -0.0004 30 1 0.3535 -2.3906 -0.0002 31 1 0.6177 -4.9205 -0.8903 32 1 0.6169 -4.9208 0.8896 33 1 2.8340 -5.9124 -0.7802 34 1 3.4398 -8.2288 -0.3479 35 1 2.2695 -8.4292 -1.6949 36 1 2.5784 -10.4381 0.0897 37 1 0.9311 -9.9921 -0.4511 38 1 0.8387 -11.2885 5.0713 39 1 0.0372 -9.5609 6.9493 40 1 0.2349 -7.5597 1.7433 41 1 1.9588 -7.2853 2.1200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567103156.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:29 Heat of formation + Delta-G solvation = -14.627678 kcal Electronic energy + Delta-G solvation = -26512.735034 eV Core-core repulsion = 22454.641104 eV Total energy + Delta-G solvation = -4058.093930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77227 -39.90535 -38.51878 -37.73813 -36.96977 -34.88121 -33.89743 -32.08457 -31.35241 -31.02915 -29.29021 -28.76901 -26.51980 -24.64724 -23.66846 -21.76665 -21.39310 -20.81221 -20.52221 -19.35490 -18.25580 -17.98432 -17.01022 -16.86611 -16.05209 -15.67072 -15.38695 -15.09652 -14.69441 -14.58973 -14.37028 -14.15144 -13.85767 -13.61382 -13.52933 -13.31560 -13.25016 -13.00506 -12.72819 -12.36324 -12.02813 -11.92137 -11.76791 -11.61212 -11.54400 -11.47336 -11.14399 -11.06609 -10.45994 -10.43600 -10.30210 -9.60196 -9.48201 -9.06683 -8.66321 -8.46706 -8.32976 -8.06459 -6.50686 -3.91950 1.02240 1.34364 2.22483 2.51402 2.94624 3.06582 3.11514 3.21295 3.26829 3.77326 3.82853 4.03733 4.17629 4.19523 4.45179 4.76940 4.86525 4.87215 4.93973 4.95781 5.08897 5.14183 5.20034 5.37574 5.43057 5.49241 5.53703 5.61226 5.69299 5.75777 5.78867 5.89626 6.12637 6.19002 6.41769 6.77549 6.94054 7.09356 7.37569 7.46861 7.78621 7.96111 8.50334 9.08437 9.43327 9.93907 10.66760 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.010959 B = 0.002771 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.334754 B =10102.026401 C =12276.931913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.301 4.301 8 H 0.104 0.896 9 N -0.561 5.561 10 C 0.438 3.562 11 O -0.583 6.583 12 C 0.048 3.952 13 N -0.659 5.659 14 C 0.078 3.922 15 H 0.068 0.932 16 C -0.137 4.137 17 C 0.111 3.889 18 N -0.617 5.617 19 C 0.608 3.392 20 O -0.527 6.527 21 C -0.035 4.035 22 C -0.098 4.098 23 C -0.180 4.180 24 C 0.088 3.912 25 Cl -0.010 7.010 26 N -0.533 5.533 27 H 0.424 0.576 28 C 0.091 3.909 29 H 0.272 0.728 30 H 0.392 0.608 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.359 0.641 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.066 0.934 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.734 -18.153 5.487 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.197 5.197 10 C 0.223 3.777 11 O -0.467 6.467 12 C -0.085 4.085 13 N -0.293 5.293 14 C -0.033 4.033 15 H 0.085 0.915 16 C -0.175 4.175 17 C -0.012 4.012 18 N -0.352 5.352 19 C 0.398 3.602 20 O -0.403 6.403 21 C -0.148 4.148 22 C -0.125 4.125 23 C -0.206 4.206 24 C -0.056 4.056 25 Cl 0.019 6.981 26 N -0.137 5.137 27 H 0.268 0.732 28 C -0.033 4.033 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.181 0.819 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.176 0.824 39 H 0.173 0.827 40 H 0.084 0.916 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.810 -18.386 6.089 19.571 hybrid contribution -0.728 1.656 -1.044 2.089 sum -3.539 -16.730 5.045 17.829 Atomic orbital electron populations 1.69604 1.05964 1.28307 1.50266 1.25269 0.95637 0.99787 0.97115 0.85856 0.79296 0.80716 0.78444 1.20357 1.20858 1.19338 1.19704 0.93397 0.82161 1.47823 0.87863 1.41861 1.09203 1.04619 1.64026 1.19718 0.88383 0.84621 0.84982 1.90539 1.13657 1.86967 1.55531 1.21785 0.94318 0.91094 1.01307 1.60004 1.18500 0.98899 1.51861 1.22455 0.97158 0.90239 0.93438 0.91458 1.23048 1.00934 0.93060 1.00483 1.22227 1.00545 0.97620 0.80767 1.48322 1.69697 1.08277 1.08864 1.16537 0.77515 0.85056 0.81067 1.90859 1.50114 1.15424 1.83919 1.20356 1.14955 0.82819 0.96672 1.21275 1.01281 0.99897 0.90012 1.20691 1.09480 0.89291 1.01099 1.21175 1.08644 0.90222 0.85547 1.98432 1.91010 1.33183 1.75509 1.42773 1.51581 1.09124 1.10253 0.73159 1.22361 1.00525 0.80276 1.00149 0.91772 0.77466 0.93367 0.89784 0.81904 0.89054 0.89213 0.89614 0.90946 0.82443 0.82732 0.91601 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.73 13.05 55.50 0.72 -23.01 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.49 29.55 -169.99 -5.02 15.46 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.30 -8.11 9.68 -14.94 -0.14 -8.26 16 8 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 9 N -0.56 -13.46 5.29 -10.96 -0.06 -13.52 16 10 C 0.44 9.59 7.82 -10.99 -0.09 9.50 16 11 O -0.58 -14.94 15.78 5.55 0.09 -14.85 16 12 C 0.05 0.73 6.03 -4.97 -0.03 0.70 16 13 N -0.66 -8.87 5.96 -106.05 -0.63 -9.50 16 14 C 0.08 0.77 3.27 -65.87 -0.22 0.56 16 15 H 0.07 0.60 7.82 -51.93 -0.41 0.19 16 16 C -0.14 -1.14 6.47 -24.58 -0.16 -1.30 16 17 C 0.11 1.00 6.93 -2.53 -0.02 0.98 16 18 N -0.62 -6.68 3.33 -172.09 -0.57 -7.25 16 19 C 0.61 7.75 7.81 -12.91 -0.10 7.65 16 20 O -0.53 -8.07 17.12 5.18 0.09 -7.98 16 21 C -0.03 -0.40 6.89 -81.93 -0.56 -0.96 16 22 C -0.10 -1.03 10.65 -39.13 -0.42 -1.45 16 23 C -0.18 -1.72 10.78 -39.94 -0.43 -2.15 16 24 C 0.09 0.91 7.74 -16.82 -0.13 0.77 16 25 Cl -0.01 -0.10 29.30 -51.86 -1.52 -1.62 16 26 N -0.53 -5.60 5.62 -6.54 -0.04 -5.64 16 27 H 0.42 4.13 4.97 -40.82 -0.20 3.93 16 28 C 0.09 0.91 4.88 -3.06 -0.01 0.90 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.39 8.97 7.90 -40.82 -0.32 8.65 16 31 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.36 5.04 8.13 -39.29 -0.32 4.72 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.81 7.99 -51.93 -0.41 0.39 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.16 1.46 8.06 -52.48 -0.42 1.03 16 39 H 0.16 1.12 8.06 -52.48 -0.42 0.70 16 40 H 0.07 0.59 7.15 -51.93 -0.37 0.21 16 41 H 0.09 0.96 7.08 -51.93 -0.37 0.59 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -31.97 364.02 -8.73 -40.70 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -4.87 Total: 14.25 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -2.41 Total: 7.47 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.57 Total: -58.92 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: 0.18 Total: -22.83 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.52 Total: -1.62 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.97 -8.73 -40.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567103156.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.072 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds